| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_3924 |
|---|
| Symbol | |
|---|
| ID | 7858737 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | - |
|---|
| Start bp | 4343228 |
|---|
| End bp | 4344634 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 78% |
|---|
| IMG OID | 643868027 |
|---|
| Product | transcriptional regulator, GntR family with aminotransferase domain |
|---|
| Protein accession | YP_002883927 |
|---|
| Protein GI | 229822401 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGTCG ACCGGCCGGC CTACGCGGCG CTCGCCGACG CCGTCCGGGT CCTCGTCGTC
GACGGGCGGG TCTCCCCGGG TACCCGGCTG CCCGGCGAAC GCGACCTGGC GGCGTCGCTC
GGCACGAGCC GGACGACGAC GGCGCGCGCC TACGCCGAGC TCGTCGCCTC CGGCTGGGCG
ACGGCGCGGC GTGGCTCCGG TACGACCGTC ACGCTGCCGG GCACGGGCCG GATCGCGTCG
ACCGTGCTGC TCCCGCGCGA GGACGACGTG CTCGACCTCA CCGCCGCGGC GTCGGTCGCC
TCGCCGGGCA CGGCCGCCCT GGTCGCGAGG GCGCTCGAGG GCCTTCCGGC GGTGCTCCGG
ACGAACGGCT ACTCACCGCT CGGGGCGCCG CGTCTCCGGG AGCTGGTCGC GGCGCGGTAC
GCGGCGCGCG GCCTGCCGAC CGACCCCGAC CAGATCATCG TGACGCCCGG AGCGTTGGCG
GCGATCGCCG TCGTCGCCCA CGCGGTGCTC GGGGCCGGTG ACCGGGCGCT CGTCGAGTCG
CCCACGTACC CCAACTCCCT CGGCGCGCTG CGCGGGGCCG GTGCGCGGGT GGTGGGGGTG
CCGGTGGGAC CCGACGGGTG GCACCCGCCG ACGTTCGCGG CGGCCCTACG CCAGAGCGCC
CCGCGCCTCG CCTACCTCGT GCCCGACTTC CACAACCCGA CCGGCATGCT CATGTCCGCG
CCGCAGCGTG AGGCGATCGC GGCGACGCTG CGCGCGAACC GGACGCTCGC CGTCGTCGAC
GAGTGCCTCG TCGAACTCGA CCTCGCCGAG GGCGGTGCCT CCGACGCCGC ACCGATGCCG
CCGCCGTTCG GGGCGTTCGA CGCCGGCGAC GAGAACACCG TCTCCCTCGG GAGCCTGTCG
AAGCCGCTGT GGGGTGGCGT GCGCGTCGGC TGGCTCCGGG CTCCGGTCGG GCTGCGGGAC
CGTCTGCTCG AGGCGCGGGT GTCGCTGGAG CTGGGGTCGT CGGCGCTGGA CCAGCTCGTC
GGCGTGGAGT TCCTCACCGA TCCCGGCCCG ATCCTCGCGG AGCGCCGGGG CGAGCTGCGC
GCGACCAGGG ACGCCTGGCA CGCCGAGCTC GGGGCCCGGC TGCCCGACTG GCGCGTGCCC
CTGCCGCGAG GCGGCCTGGC GCTGTGGGTC GAGCTGCCGC AGCGGCTCTC CGGCGCGCTG
ACGATCGCGG CAGAGCGGCA CGGGCTCGCC CTCGTGCCGG GCGCGCGTTT CACCACCGAC
GGCACCCACG CCGGAAGGCT CCGCCTCCCG CTCACCGTGC CGGCCGCCGT CGTCCCCGAC
GCCGTCGAAC GGCTCGCCGC GGCGTACGCC GACGCGCTGC GCCGGCCGGA CCGGGCGGCG
GACGGCGGGC CGCCCCTCGT CGCGTGA
|
|---|
| Protein sequence | MPVDRPAYAA LADAVRVLVV DGRVSPGTRL PGERDLAASL GTSRTTTARA YAELVASGWA
TARRGSGTTV TLPGTGRIAS TVLLPREDDV LDLTAAASVA SPGTAALVAR ALEGLPAVLR
TNGYSPLGAP RLRELVAARY AARGLPTDPD QIIVTPGALA AIAVVAHAVL GAGDRALVES
PTYPNSLGAL RGAGARVVGV PVGPDGWHPP TFAAALRQSA PRLAYLVPDF HNPTGMLMSA
PQREAIAATL RANRTLAVVD ECLVELDLAE GGASDAAPMP PPFGAFDAGD ENTVSLGSLS
KPLWGGVRVG WLRAPVGLRD RLLEARVSLE LGSSALDQLV GVEFLTDPGP ILAERRGELR
ATRDAWHAEL GARLPDWRVP LPRGGLALWV ELPQRLSGAL TIAAERHGLA LVPGARFTTD
GTHAGRLRLP LTVPAAVVPD AVERLAAAYA DALRRPDRAA DGGPPLVA
|
|---|
| |