More than 300 homologs were found in PanDaTox collection
for query gene Bfae_13600 on replicon NC_013172
Organism: Brachybacterium faecium DSM 4810



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013172  Bfae_13600  ABC-type polysaccharide transport system, permease component  100 
 
 
332 aa  663    Brachybacterium faecium DSM 4810  Bacteria  normal  0.248364  n/a   
 
 
-
 
NC_009664  Krad_0410  binding-protein-dependent transport systems inner membrane component  75.17 
 
 
331 aa  430  1e-119  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0705285 
 
 
-
 
NC_012669  Bcav_1320  binding-protein-dependent transport systems inner membrane component  66.46 
 
 
327 aa  415  9.999999999999999e-116  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_10090  ABC-type polysaccharide transport system, permease component  67.11 
 
 
331 aa  414  1e-114  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_014211  Ndas_5564  binding-protein-dependent transport systems inner membrane component  60.82 
 
 
346 aa  405  1.0000000000000001e-112  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.271716  normal  0.315175 
 
 
-
 
NC_007333  Tfu_1610  putative transport system integral membrane protein  62.11 
 
 
341 aa  400  9.999999999999999e-111  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1292  transmembrane lipoprotein  58.93 
 
 
340 aa  393  1e-108  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.817448 
 
 
-
 
NC_013174  Jden_1768  binding-protein-dependent transport systems inner membrane component  61.18 
 
 
320 aa  388  1e-107  Jonesia denitrificans DSM 20603  Bacteria  normal  0.0555688  normal  0.200854 
 
 
-
 
NC_013093  Amir_2171  binding-protein-dependent transport systems inner membrane component  61.64 
 
 
324 aa  377  1e-103  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4937  binding-protein-dependent transport systems inner membrane component  57.14 
 
 
339 aa  372  1e-102  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00187301  normal 
 
 
-
 
NC_013131  Caci_4681  binding-protein-dependent transport systems inner membrane component  55.41 
 
 
310 aa  363  3e-99  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00295974  normal  0.937314 
 
 
-
 
NC_013172  Bfae_04190  ABC-type polysaccharide transport system, permease component  60.39 
 
 
313 aa  357  1.9999999999999998e-97  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_4041  binding-protein-dependent transport systems inner membrane component  53.11 
 
 
330 aa  353  2e-96  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1581  binding-protein-dependent transport systems inner membrane component  58.47 
 
 
305 aa  347  2e-94  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.595775  normal 
 
 
-
 
NC_012669  Bcav_3386  binding-protein-dependent transport systems inner membrane component  55.72 
 
 
332 aa  342  5e-93  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1438  binding-protein-dependent transport systems inner membrane component  53.31 
 
 
335 aa  311  7.999999999999999e-84  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.650576  normal 
 
 
-
 
NC_013521  Sked_05740  ABC-type polysaccharide transport system, permease component  53.7 
 
 
346 aa  309  4e-83  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.767315  normal 
 
 
-
 
NC_013131  Caci_6722  binding-protein-dependent transport systems inner membrane component  50.99 
 
 
350 aa  298  6e-80  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.14041  normal 
 
 
-
 
NC_013131  Caci_0128  binding-protein-dependent transport systems inner membrane component  52.96 
 
 
319 aa  296  3e-79  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5753  binding-protein-dependent transport systems inner membrane component  50.61 
 
 
329 aa  294  2e-78  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.623467  normal 
 
 
-
 
NC_012034  Athe_2093  binding-protein-dependent transport systems inner membrane component  40.32 
 
 
321 aa  273  2.0000000000000002e-72  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.000000000858649  n/a   
 
 
-
 
NC_013172  Bfae_29230  ABC-type polysaccharide transport system, permease component  43.07 
 
 
334 aa  274  2.0000000000000002e-72  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1981  binding-protein-dependent transport systems inner membrane component  41.14 
 
 
332 aa  255  8e-67  Actinosynnema mirum DSM 43827  Bacteria  normal  0.837533  n/a   
 
 
-
 
NC_014165  Tbis_1563  binding-protein-dependent transporter inner membrane component  39.69 
 
 
331 aa  253  4.0000000000000004e-66  Thermobispora bispora DSM 43833  Bacteria  normal  0.117544  normal 
 
 
-
 
NC_010001  Cphy_0339  binding-protein-dependent transport systems inner membrane component  41.16 
 
 
333 aa  251  1e-65  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_2805  binding-protein-dependent transport systems inner membrane component  39.75 
 
 
339 aa  246  3e-64  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0077711 
 
 
-
 
NC_013521  Sked_20490  ABC-type polysaccharide transport system, permease component  42.16 
 
 
326 aa  243  3.9999999999999997e-63  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.086583  normal  0.344725 
 
 
-
 
NC_011886  Achl_3113  binding-protein-dependent transport systems inner membrane component  39.33 
 
 
325 aa  241  1e-62  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013131  Caci_3819  binding-protein-dependent transport systems inner membrane component  40.31 
 
 
322 aa  241  1e-62  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.595689  normal  0.292651 
 
 
-
 
NC_011661  Dtur_0312  binding-protein-dependent transport systems inner membrane component  37.88 
 
 
304 aa  241  2e-62  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3315  binding-protein-dependent transport systems inner membrane component  39.93 
 
 
324 aa  239  5e-62  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0946  binding-protein-dependent transport systems inner membrane component  39.09 
 
 
322 aa  239  5.999999999999999e-62  Clostridium cellulolyticum H10  Bacteria  normal  0.0463053  n/a   
 
 
-
 
NC_012034  Athe_2054  binding-protein-dependent transport systems inner membrane component  40.89 
 
 
304 aa  239  6.999999999999999e-62  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_01640  ABC-type polysaccharide transport system, permease component  40.35 
 
 
324 aa  237  2e-61  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3325  binding-protein-dependent transport systems inner membrane component  38.99 
 
 
334 aa  237  2e-61  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.491227  normal  0.0603947 
 
 
-
 
NC_012034  Athe_2553  binding-protein-dependent transport systems inner membrane component  39.32 
 
 
308 aa  237  3e-61  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.336984  n/a   
 
 
-
 
NC_013525  Tter_1103  binding-protein-dependent transport systems inner membrane component  38.78 
 
 
323 aa  228  1e-58  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013521  Sked_33150  ABC-type polysaccharide transport system, permease component  40 
 
 
336 aa  228  1e-58  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.96599 
 
 
-
 
NC_012034  Athe_2331  binding-protein-dependent transport systems inner membrane component  37.42 
 
 
317 aa  227  2e-58  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3000  binding-protein-dependent transport systems inner membrane component  39.17 
 
 
328 aa  226  3e-58  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.999287 
 
 
-
 
NC_013411  GYMC61_2708  binding-protein-dependent transport systems inner membrane component  38.54 
 
 
315 aa  224  1e-57  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010001  Cphy_1119  binding-protein-dependent transport systems inner membrane component  36.1 
 
 
318 aa  220  1.9999999999999999e-56  Clostridium phytofermentans ISDg  Bacteria  normal  0.0757482  n/a   
 
 
-
 
NC_012034  Athe_0850  binding-protein-dependent transport systems inner membrane component  40.47 
 
 
312 aa  218  1e-55  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.3931  n/a   
 
 
-
 
NC_013174  Jden_2401  binding-protein-dependent transport systems inner membrane component  39.93 
 
 
340 aa  215  8e-55  Jonesia denitrificans DSM 20603  Bacteria  normal  0.0135356  normal 
 
 
-
 
NC_012034  Athe_0085  binding-protein-dependent transport systems inner membrane component  36.46 
 
 
318 aa  214  1.9999999999999998e-54  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.0126141  n/a   
 
 
-
 
NC_010001  Cphy_3209  binding-protein-dependent transport systems inner membrane component  35.35 
 
 
319 aa  213  4.9999999999999996e-54  Clostridium phytofermentans ISDg  Bacteria  normal  0.24552  n/a   
 
 
-
 
NC_013530  Xcel_0367  binding-protein-dependent transport systems inner membrane component  40.14 
 
 
332 aa  212  5.999999999999999e-54  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0773  binding-protein-dependent transport systems inner membrane component  37.59 
 
 
311 aa  211  1e-53  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000000374508  n/a   
 
 
-
 
NC_013172  Bfae_17870  ABC-type polysaccharide transport system, permease component  39.87 
 
 
327 aa  209  5e-53  Brachybacterium faecium DSM 4810  Bacteria  normal  0.246834  n/a   
 
 
-
 
NC_013526  Tter_1992  binding-protein-dependent transport systems inner membrane component  39.16 
 
 
327 aa  208  1e-52  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3242  binding-protein-dependent transport systems inner membrane component  35.53 
 
 
310 aa  207  2e-52  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0151  binding-protein-dependent transport systems inner membrane component  34.92 
 
 
323 aa  207  3e-52  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_0761  ABC-type polysaccharide transport system, permease component  33.77 
 
 
316 aa  206  6e-52  Lactococcus lactis subsp. cremoris SK11  Bacteria  hitchhiker  0.000797199  n/a   
 
 
-
 
NC_010001  Cphy_0860  binding-protein-dependent transport systems inner membrane component  34.33 
 
 
313 aa  205  9e-52  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_0428  binding-protein-dependent transport systems inner membrane component  37.66 
 
 
326 aa  202  7e-51  Arthrobacter sp. FB24  Bacteria  normal  0.278038  n/a   
 
 
-
 
NC_012034  Athe_2031  binding-protein-dependent transport systems inner membrane component  31.79 
 
 
315 aa  201  9.999999999999999e-51  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2192  binding-protein-dependent transport systems inner membrane component  35.19 
 
 
307 aa  200  1.9999999999999998e-50  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2656  binding-protein-dependent transport systems inner membrane component  32.48 
 
 
315 aa  200  3e-50  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2660  binding-protein-dependent transport systems inner membrane component  37.2 
 
 
335 aa  199  3.9999999999999996e-50  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.245622  n/a   
 
 
-
 
NC_010001  Cphy_0485  binding-protein-dependent transport systems inner membrane component  35.78 
 
 
326 aa  198  1.0000000000000001e-49  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013515  Smon_0121  binding-protein-dependent transport systems inner membrane component  33 
 
 
298 aa  196  4.0000000000000005e-49  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_013946  Mrub_0281  binding-protein-dependent transport systems inner membrane component  38.05 
 
 
315 aa  195  7e-49  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.949472 
 
 
-
 
NC_013521  Sked_02840  ABC-type polysaccharide transport system, permease component  33.23 
 
 
324 aa  191  1e-47  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.840845  normal 
 
 
-
 
NC_011898  Ccel_1253  binding-protein-dependent transport systems inner membrane component  38.51 
 
 
300 aa  191  2e-47  Clostridium cellulolyticum H10  Bacteria  normal  0.601892  n/a   
 
 
-
 
NC_011898  Ccel_0143  binding-protein-dependent transport systems inner membrane component  33.44 
 
 
318 aa  190  2.9999999999999997e-47  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0929  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
330 aa  190  2.9999999999999997e-47  Clostridium phytofermentans ISDg  Bacteria  normal  0.293677  n/a   
 
 
-
 
NC_012669  Bcav_1872  binding-protein-dependent transport systems inner membrane component  39.37 
 
 
326 aa  189  7e-47  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.095702  normal  0.124231 
 
 
-
 
NC_010001  Cphy_0664  binding-protein-dependent transport systems inner membrane component  31.83 
 
 
324 aa  187  2e-46  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.00000000161767  n/a   
 
 
-
 
NC_012669  Bcav_0059  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
320 aa  186  3e-46  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.542171  normal  0.242962 
 
 
-
 
NC_013530  Xcel_2785  binding-protein-dependent transport systems inner membrane component  35.78 
 
 
351 aa  186  4e-46  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3569  binding-protein-dependent transport systems inner membrane component  31.19 
 
 
324 aa  181  1e-44  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1916  binding-protein-dependent transport systems inner membrane component  35.97 
 
 
320 aa  181  2e-44  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00000481644  n/a   
 
 
-
 
NC_010001  Cphy_0393  binding-protein-dependent transport systems inner membrane component  31.4 
 
 
326 aa  175  9.999999999999999e-43  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2456  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
316 aa  166  6.9999999999999995e-40  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2732  binding-protein-dependent transport systems inner membrane component  31.41 
 
 
316 aa  164  1.0000000000000001e-39  Clostridium phytofermentans ISDg  Bacteria  normal  0.0340422  n/a   
 
 
-
 
NC_010001  Cphy_1547  binding-protein-dependent transport systems inner membrane component  30.59 
 
 
478 aa  157  2e-37  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.0000265018  n/a   
 
 
-
 
NC_010001  Cphy_0695  binding-protein-dependent transport systems inner membrane component  31.41 
 
 
288 aa  155  9e-37  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.0000207262  n/a   
 
 
-
 
NC_013171  Apre_0144  binding-protein-dependent transport systems inner membrane component  31.13 
 
 
333 aa  154  2.9999999999999998e-36  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1014  binding-protein-dependent transport systems inner membrane component  30.82 
 
 
323 aa  152  5.9999999999999996e-36  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1190  binding-protein-dependent transport systems inner membrane component  32.47 
 
 
292 aa  147  3e-34  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0859971  n/a   
 
 
-
 
NC_008261  CPF_2339  ABC transporter, permease protein  28.97 
 
 
322 aa  138  1e-31  Clostridium perfringens ATCC 13124  Bacteria  normal  0.552195  n/a   
 
 
-
 
NC_012034  Athe_0595  binding-protein-dependent transport systems inner membrane component  33.11 
 
 
313 aa  138  1e-31  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1709  binding-protein-dependent transport systems inner membrane component  30.88 
 
 
307 aa  137  2e-31  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2051  sugar transport system (permease) (binding protein dependent transporter)  28.81 
 
 
308 aa  135  9.999999999999999e-31  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2571  binding-protein-dependent transport systems inner membrane component  26.6 
 
 
321 aa  132  6.999999999999999e-30  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1715  binding-protein-dependent transport systems inner membrane component  28.62 
 
 
316 aa  130  5.0000000000000004e-29  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0911  binding-protein-dependent transport systems inner membrane component  31.46 
 
 
315 aa  124  3e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.488788  normal 
 
 
-
 
NC_009664  Krad_3565  binding-protein-dependent transport systems inner membrane component  31.92 
 
 
316 aa  117  1.9999999999999998e-25  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.702273  normal  0.0136241 
 
 
-
 
NC_013947  Snas_0757  binding-protein-dependent transport systems inner membrane component  32.23 
 
 
296 aa  116  6e-25  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_27340  permease component of ABC-type sugar transporter  33.62 
 
 
319 aa  112  7.000000000000001e-24  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  28.52 
 
 
298 aa  111  1.0000000000000001e-23  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3529  binding-protein-dependent transport systems inner membrane component  28.28 
 
 
311 aa  112  1.0000000000000001e-23  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5460  binding-protein-dependent transport systems inner membrane component  31.06 
 
 
334 aa  111  2.0000000000000002e-23  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0042  binding-protein-dependent transport systems inner membrane component  28.73 
 
 
331 aa  110  3e-23  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_4197  binding-protein-dependent transport systems inner membrane component  31.13 
 
 
326 aa  108  9.000000000000001e-23  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.979447  normal 
 
 
-
 
NC_009636  Smed_2314  binding-protein-dependent transport systems inner membrane component  28.62 
 
 
310 aa  108  1e-22  Sinorhizobium medicae WSM419  Bacteria  normal  0.498676  normal  0.350334 
 
 
-
 
NC_013131  Caci_2784  binding-protein-dependent transport systems inner membrane component  29.14 
 
 
306 aa  108  1e-22  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.390449  normal 
 
 
-
 
NC_007413  Ava_0563  binding-protein dependent transport system inner membrane protein  31.84 
 
 
294 aa  108  2e-22  Anabaena variabilis ATCC 29413  Bacteria  normal  0.22835  normal  0.0558608 
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  25.36 
 
 
299 aa  107  2e-22  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2860  binding-protein-dependent transport systems inner membrane component  28.44 
 
 
322 aa  106  5e-22  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.396467  n/a   
 
 
-
 
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