More than 300 homologs were found in PanDaTox collection
for query gene CPF_2339 on replicon NC_008261
Organism: Clostridium perfringens ATCC 13124



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008261  CPF_2339  ABC transporter, permease protein  100 
 
 
322 aa  648    Clostridium perfringens ATCC 13124  Bacteria  normal  0.552195  n/a   
 
 
-
 
NC_008262  CPR_2051  sugar transport system (permease) (binding protein dependent transporter)  98.7 
 
 
308 aa  616  1e-175  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0144  binding-protein-dependent transport systems inner membrane component  56.05 
 
 
333 aa  382  1e-105  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1715  binding-protein-dependent transport systems inner membrane component  52.4 
 
 
316 aa  337  1.9999999999999998e-91  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0595  binding-protein-dependent transport systems inner membrane component  53.11 
 
 
313 aa  314  9.999999999999999e-85  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2571  binding-protein-dependent transport systems inner membrane component  49.51 
 
 
321 aa  310  2e-83  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1709  binding-protein-dependent transport systems inner membrane component  51.31 
 
 
307 aa  300  2e-80  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0695  binding-protein-dependent transport systems inner membrane component  45.55 
 
 
288 aa  260  2e-68  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.0000207262  n/a   
 
 
-
 
NC_012034  Athe_2093  binding-protein-dependent transport systems inner membrane component  37 
 
 
321 aa  213  4.9999999999999996e-54  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.000000000858649  n/a   
 
 
-
 
NC_012034  Athe_0085  binding-protein-dependent transport systems inner membrane component  35.42 
 
 
318 aa  197  2.0000000000000003e-49  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.0126141  n/a   
 
 
-
 
NC_010001  Cphy_3209  binding-protein-dependent transport systems inner membrane component  35.86 
 
 
319 aa  196  3e-49  Clostridium phytofermentans ISDg  Bacteria  normal  0.24552  n/a   
 
 
-
 
NC_013515  Smon_0121  binding-protein-dependent transport systems inner membrane component  34.54 
 
 
298 aa  196  4.0000000000000005e-49  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_013172  Bfae_29230  ABC-type polysaccharide transport system, permease component  32.66 
 
 
334 aa  196  6e-49  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2031  binding-protein-dependent transport systems inner membrane component  33.54 
 
 
315 aa  195  8.000000000000001e-49  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0773  binding-protein-dependent transport systems inner membrane component  35.46 
 
 
311 aa  194  2e-48  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000000374508  n/a   
 
 
-
 
NC_011661  Dtur_0312  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
304 aa  189  5e-47  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0860  binding-protein-dependent transport systems inner membrane component  35.5 
 
 
313 aa  188  9e-47  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0946  binding-protein-dependent transport systems inner membrane component  35.44 
 
 
322 aa  188  1e-46  Clostridium cellulolyticum H10  Bacteria  normal  0.0463053  n/a   
 
 
-
 
NC_011898  Ccel_0151  binding-protein-dependent transport systems inner membrane component  32.29 
 
 
323 aa  185  8e-46  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2708  binding-protein-dependent transport systems inner membrane component  33.65 
 
 
315 aa  183  3e-45  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010001  Cphy_3242  binding-protein-dependent transport systems inner membrane component  34.97 
 
 
310 aa  183  3e-45  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1563  binding-protein-dependent transporter inner membrane component  32.59 
 
 
331 aa  180  2e-44  Thermobispora bispora DSM 43833  Bacteria  normal  0.117544  normal 
 
 
-
 
NC_010001  Cphy_0664  binding-protein-dependent transport systems inner membrane component  35.6 
 
 
324 aa  179  4.999999999999999e-44  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.00000000161767  n/a   
 
 
-
 
NC_012034  Athe_2331  binding-protein-dependent transport systems inner membrane component  34.63 
 
 
317 aa  178  1e-43  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1103  binding-protein-dependent transport systems inner membrane component  33.01 
 
 
323 aa  178  1e-43  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010001  Cphy_0929  binding-protein-dependent transport systems inner membrane component  35.57 
 
 
330 aa  177  1e-43  Clostridium phytofermentans ISDg  Bacteria  normal  0.293677  n/a   
 
 
-
 
NC_012034  Athe_2553  binding-protein-dependent transport systems inner membrane component  34.55 
 
 
308 aa  176  4e-43  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.336984  n/a   
 
 
-
 
NC_013526  Tter_1992  binding-protein-dependent transport systems inner membrane component  34.63 
 
 
327 aa  174  1.9999999999999998e-42  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3569  binding-protein-dependent transport systems inner membrane component  31.85 
 
 
324 aa  174  1.9999999999999998e-42  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0339  binding-protein-dependent transport systems inner membrane component  30.79 
 
 
333 aa  173  2.9999999999999996e-42  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_0428  binding-protein-dependent transport systems inner membrane component  31.13 
 
 
326 aa  173  3.9999999999999995e-42  Arthrobacter sp. FB24  Bacteria  normal  0.278038  n/a   
 
 
-
 
NC_010001  Cphy_2656  binding-protein-dependent transport systems inner membrane component  32.18 
 
 
315 aa  173  3.9999999999999995e-42  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3315  binding-protein-dependent transport systems inner membrane component  35.39 
 
 
324 aa  172  5e-42  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2054  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
304 aa  172  9e-42  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_4041  binding-protein-dependent transport systems inner membrane component  31.38 
 
 
330 aa  171  2e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_1981  binding-protein-dependent transport systems inner membrane component  30.79 
 
 
332 aa  168  9e-41  Actinosynnema mirum DSM 43827  Bacteria  normal  0.837533  n/a   
 
 
-
 
NC_008527  LACR_0761  ABC-type polysaccharide transport system, permease component  33.33 
 
 
316 aa  169  9e-41  Lactococcus lactis subsp. cremoris SK11  Bacteria  hitchhiker  0.000797199  n/a   
 
 
-
 
NC_011898  Ccel_1253  binding-protein-dependent transport systems inner membrane component  36.93 
 
 
300 aa  168  1e-40  Clostridium cellulolyticum H10  Bacteria  normal  0.601892  n/a   
 
 
-
 
NC_013131  Caci_4681  binding-protein-dependent transport systems inner membrane component  31.61 
 
 
310 aa  168  1e-40  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00295974  normal  0.937314 
 
 
-
 
NC_013521  Sked_02840  ABC-type polysaccharide transport system, permease component  30.94 
 
 
324 aa  168  1e-40  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.840845  normal 
 
 
-
 
NC_013131  Caci_3819  binding-protein-dependent transport systems inner membrane component  33.75 
 
 
322 aa  167  2.9999999999999998e-40  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.595689  normal  0.292651 
 
 
-
 
NC_011898  Ccel_0143  binding-protein-dependent transport systems inner membrane component  34.28 
 
 
318 aa  166  4e-40  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1916  binding-protein-dependent transport systems inner membrane component  32.81 
 
 
320 aa  166  4e-40  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00000481644  n/a   
 
 
-
 
NC_010001  Cphy_1119  binding-protein-dependent transport systems inner membrane component  31.97 
 
 
318 aa  166  5e-40  Clostridium phytofermentans ISDg  Bacteria  normal  0.0757482  n/a   
 
 
-
 
NC_014151  Cfla_3000  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
328 aa  166  6.9999999999999995e-40  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.999287 
 
 
-
 
NC_012669  Bcav_1872  binding-protein-dependent transport systems inner membrane component  33.02 
 
 
326 aa  165  9e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.095702  normal  0.124231 
 
 
-
 
NC_014151  Cfla_2805  binding-protein-dependent transport systems inner membrane component  30.89 
 
 
339 aa  165  1.0000000000000001e-39  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0077711 
 
 
-
 
NC_013172  Bfae_01640  ABC-type polysaccharide transport system, permease component  31.08 
 
 
324 aa  165  1.0000000000000001e-39  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3113  binding-protein-dependent transport systems inner membrane component  32.51 
 
 
325 aa  165  1.0000000000000001e-39  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013530  Xcel_2660  binding-protein-dependent transport systems inner membrane component  34.21 
 
 
335 aa  164  2.0000000000000002e-39  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.245622  n/a   
 
 
-
 
NC_013172  Bfae_17870  ABC-type polysaccharide transport system, permease component  30.74 
 
 
327 aa  164  2.0000000000000002e-39  Brachybacterium faecium DSM 4810  Bacteria  normal  0.246834  n/a   
 
 
-
 
NC_010001  Cphy_0393  binding-protein-dependent transport systems inner membrane component  31.19 
 
 
326 aa  164  2.0000000000000002e-39  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_2401  binding-protein-dependent transport systems inner membrane component  33.12 
 
 
340 aa  164  3e-39  Jonesia denitrificans DSM 20603  Bacteria  normal  0.0135356  normal 
 
 
-
 
NC_013521  Sked_33150  ABC-type polysaccharide transport system, permease component  33.23 
 
 
336 aa  163  4.0000000000000004e-39  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.96599 
 
 
-
 
NC_012669  Bcav_3325  binding-protein-dependent transport systems inner membrane component  31.27 
 
 
334 aa  162  6e-39  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.491227  normal  0.0603947 
 
 
-
 
NC_012669  Bcav_0059  binding-protein-dependent transport systems inner membrane component  27.9 
 
 
320 aa  160  2e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.542171  normal  0.242962 
 
 
-
 
NC_014211  Ndas_5564  binding-protein-dependent transport systems inner membrane component  30.59 
 
 
346 aa  161  2e-38  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.271716  normal  0.315175 
 
 
-
 
NC_013131  Caci_6722  binding-protein-dependent transport systems inner membrane component  31.13 
 
 
350 aa  160  4e-38  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.14041  normal 
 
 
-
 
NC_007333  Tfu_1610  putative transport system integral membrane protein  29.72 
 
 
341 aa  159  6e-38  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_20490  ABC-type polysaccharide transport system, permease component  31.29 
 
 
326 aa  159  7e-38  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.086583  normal  0.344725 
 
 
-
 
NC_012669  Bcav_1581  binding-protein-dependent transport systems inner membrane component  33.66 
 
 
305 aa  157  2e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.595775  normal 
 
 
-
 
NC_013521  Sked_10090  ABC-type polysaccharide transport system, permease component  30.99 
 
 
331 aa  155  6e-37  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_0850  binding-protein-dependent transport systems inner membrane component  29.47 
 
 
312 aa  155  1e-36  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.3931  n/a   
 
 
-
 
NC_013946  Mrub_0281  binding-protein-dependent transport systems inner membrane component  33.81 
 
 
315 aa  155  1e-36  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.949472 
 
 
-
 
NC_013172  Bfae_04190  ABC-type polysaccharide transport system, permease component  30.22 
 
 
313 aa  153  5e-36  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1320  binding-protein-dependent transport systems inner membrane component  30.35 
 
 
327 aa  151  1e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1292  transmembrane lipoprotein  29.15 
 
 
340 aa  152  1e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.817448 
 
 
-
 
NC_013131  Caci_4937  binding-protein-dependent transport systems inner membrane component  31.13 
 
 
339 aa  148  1.0000000000000001e-34  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00187301  normal 
 
 
-
 
NC_013530  Xcel_0367  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
332 aa  148  1.0000000000000001e-34  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2785  binding-protein-dependent transport systems inner membrane component  28.92 
 
 
351 aa  145  9e-34  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0410  binding-protein-dependent transport systems inner membrane component  32.04 
 
 
331 aa  144  1e-33  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0705285 
 
 
-
 
NC_010001  Cphy_0485  binding-protein-dependent transport systems inner membrane component  30.3 
 
 
326 aa  144  2e-33  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0128  binding-protein-dependent transport systems inner membrane component  31.05 
 
 
319 aa  143  3e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1768  binding-protein-dependent transport systems inner membrane component  28.75 
 
 
320 aa  143  4e-33  Jonesia denitrificans DSM 20603  Bacteria  normal  0.0555688  normal  0.200854 
 
 
-
 
NC_010001  Cphy_2732  binding-protein-dependent transport systems inner membrane component  30.09 
 
 
316 aa  141  1.9999999999999998e-32  Clostridium phytofermentans ISDg  Bacteria  normal  0.0340422  n/a   
 
 
-
 
NC_011898  Ccel_1014  binding-protein-dependent transport systems inner membrane component  30.97 
 
 
323 aa  139  6e-32  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2192  binding-protein-dependent transport systems inner membrane component  30.29 
 
 
307 aa  138  1e-31  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2171  binding-protein-dependent transport systems inner membrane component  29.37 
 
 
324 aa  131  1.0000000000000001e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5753  binding-protein-dependent transport systems inner membrane component  31.72 
 
 
329 aa  128  1.0000000000000001e-28  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.623467  normal 
 
 
-
 
NC_012669  Bcav_3386  binding-protein-dependent transport systems inner membrane component  28.97 
 
 
332 aa  127  2.0000000000000002e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_13600  ABC-type polysaccharide transport system, permease component  27.5 
 
 
332 aa  124  2e-27  Brachybacterium faecium DSM 4810  Bacteria  normal  0.248364  n/a   
 
 
-
 
NC_013521  Sked_05740  ABC-type polysaccharide transport system, permease component  29.78 
 
 
346 aa  124  2e-27  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.767315  normal 
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  30.77 
 
 
309 aa  124  3e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_010001  Cphy_1547  binding-protein-dependent transport systems inner membrane component  29.11 
 
 
478 aa  123  5e-27  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.0000265018  n/a   
 
 
-
 
NC_012669  Bcav_1438  binding-protein-dependent transport systems inner membrane component  30.03 
 
 
335 aa  122  8e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.650576  normal 
 
 
-
 
NC_010001  Cphy_1390  binding-protein-dependent transport systems inner membrane component  30.6 
 
 
308 aa  120  4.9999999999999996e-26  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009939  Dgeo_2918  ABC-type sugar transport system, permease component  31.72 
 
 
305 aa  118  9.999999999999999e-26  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_010816  BLD_1549  MalF-type ABC sugar transport systems permease component  29.21 
 
 
317 aa  116  3.9999999999999997e-25  Bifidobacterium longum DJO10A  Bacteria  normal  0.649517  n/a   
 
 
-
 
NC_014158  Tpau_3529  binding-protein-dependent transport systems inner membrane component  29.46 
 
 
311 aa  115  7.999999999999999e-25  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2456  binding-protein-dependent transport systems inner membrane component  27.69 
 
 
316 aa  115  1.0000000000000001e-24  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1190  binding-protein-dependent transport systems inner membrane component  29.75 
 
 
292 aa  114  2.0000000000000002e-24  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0859971  n/a   
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  30.22 
 
 
307 aa  113  4.0000000000000004e-24  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  30.22 
 
 
307 aa  113  4.0000000000000004e-24  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_011661  Dtur_0382  binding-protein-dependent transport systems inner membrane component  29.66 
 
 
296 aa  112  6e-24  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0754  binding-protein-dependent transport systems inner membrane component  30.62 
 
 
324 aa  111  2.0000000000000002e-23  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000204062  n/a   
 
 
-
 
NC_010001  Cphy_0527  binding-protein-dependent transport systems inner membrane component  29.69 
 
 
296 aa  110  4.0000000000000004e-23  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000000283647  n/a   
 
 
-
 
NC_014213  Mesil_3393  binding-protein-dependent transport systems inner membrane component  30.9 
 
 
291 aa  109  5e-23  Meiothermus silvanus DSM 9946  Bacteria  normal  0.199241  normal  0.935882 
 
 
-
 
NC_012669  Bcav_3002  binding-protein-dependent transport systems inner membrane component  25.9 
 
 
320 aa  106  4e-22  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1516  binding-protein-dependent transport systems inner membrane component  28.11 
 
 
315 aa  107  4e-22  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0640497  normal 
 
 
-
 
NC_012669  Bcav_1699  binding-protein-dependent transport systems inner membrane component  27.39 
 
 
315 aa  106  4e-22  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.258357  normal 
 
 
-
 
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