More than 300 homologs were found in PanDaTox collection
for query gene Sked_02840 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_02840  ABC-type polysaccharide transport system, permease component  100 
 
 
324 aa  654    Sanguibacter keddieii DSM 10542  Bacteria  normal  0.840845  normal 
 
 
-
 
NC_012669  Bcav_0059  binding-protein-dependent transport systems inner membrane component  74.23 
 
 
320 aa  486  1e-136  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.542171  normal  0.242962 
 
 
-
 
NC_008527  LACR_0761  ABC-type polysaccharide transport system, permease component  49.17 
 
 
316 aa  306  3e-82  Lactococcus lactis subsp. cremoris SK11  Bacteria  hitchhiker  0.000797199  n/a   
 
 
-
 
NC_008541  Arth_0428  binding-protein-dependent transport systems inner membrane component  50.5 
 
 
326 aa  305  8.000000000000001e-82  Arthrobacter sp. FB24  Bacteria  normal  0.278038  n/a   
 
 
-
 
NC_012034  Athe_2031  binding-protein-dependent transport systems inner membrane component  46.88 
 
 
315 aa  298  1e-79  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_17870  ABC-type polysaccharide transport system, permease component  50.33 
 
 
327 aa  293  2e-78  Brachybacterium faecium DSM 4810  Bacteria  normal  0.246834  n/a   
 
 
-
 
NC_012034  Athe_2331  binding-protein-dependent transport systems inner membrane component  44.88 
 
 
317 aa  278  1e-73  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0393  binding-protein-dependent transport systems inner membrane component  45.59 
 
 
326 aa  276  3e-73  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1563  binding-protein-dependent transporter inner membrane component  43.47 
 
 
331 aa  273  4.0000000000000004e-72  Thermobispora bispora DSM 43833  Bacteria  normal  0.117544  normal 
 
 
-
 
NC_013093  Amir_1981  binding-protein-dependent transport systems inner membrane component  43.16 
 
 
332 aa  268  1e-70  Actinosynnema mirum DSM 43827  Bacteria  normal  0.837533  n/a   
 
 
-
 
NC_010001  Cphy_2192  binding-protein-dependent transport systems inner membrane component  42.52 
 
 
307 aa  268  1e-70  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_2805  binding-protein-dependent transport systems inner membrane component  42.22 
 
 
339 aa  266  2.9999999999999995e-70  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0077711 
 
 
-
 
NC_011898  Ccel_1014  binding-protein-dependent transport systems inner membrane component  42.94 
 
 
323 aa  266  2.9999999999999995e-70  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1119  binding-protein-dependent transport systems inner membrane component  42.95 
 
 
318 aa  260  3e-68  Clostridium phytofermentans ISDg  Bacteria  normal  0.0757482  n/a   
 
 
-
 
NC_013521  Sked_33150  ABC-type polysaccharide transport system, permease component  44.2 
 
 
336 aa  259  6e-68  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.96599 
 
 
-
 
NC_013530  Xcel_2660  binding-protein-dependent transport systems inner membrane component  43.45 
 
 
335 aa  257  2e-67  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.245622  n/a   
 
 
-
 
NC_013172  Bfae_01640  ABC-type polysaccharide transport system, permease component  44.78 
 
 
324 aa  257  2e-67  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_20490  ABC-type polysaccharide transport system, permease component  44.44 
 
 
326 aa  252  6e-66  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.086583  normal  0.344725 
 
 
-
 
NC_013131  Caci_3819  binding-protein-dependent transport systems inner membrane component  42.59 
 
 
322 aa  252  7e-66  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.595689  normal  0.292651 
 
 
-
 
NC_010001  Cphy_2656  binding-protein-dependent transport systems inner membrane component  40.6 
 
 
315 aa  251  8.000000000000001e-66  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0367  binding-protein-dependent transport systems inner membrane component  45.89 
 
 
332 aa  251  2e-65  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0085  binding-protein-dependent transport systems inner membrane component  43.33 
 
 
318 aa  247  2e-64  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.0126141  n/a   
 
 
-
 
NC_010001  Cphy_0929  binding-protein-dependent transport systems inner membrane component  41.22 
 
 
330 aa  247  2e-64  Clostridium phytofermentans ISDg  Bacteria  normal  0.293677  n/a   
 
 
-
 
NC_012669  Bcav_3325  binding-protein-dependent transport systems inner membrane component  43.61 
 
 
334 aa  246  3e-64  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.491227  normal  0.0603947 
 
 
-
 
NC_014151  Cfla_3000  binding-protein-dependent transport systems inner membrane component  44.03 
 
 
328 aa  244  9.999999999999999e-64  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.999287 
 
 
-
 
NC_012034  Athe_2093  binding-protein-dependent transport systems inner membrane component  40.38 
 
 
321 aa  244  9.999999999999999e-64  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.000000000858649  n/a   
 
 
-
 
NC_010001  Cphy_0339  binding-protein-dependent transport systems inner membrane component  41.89 
 
 
333 aa  242  5e-63  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1103  binding-protein-dependent transport systems inner membrane component  39.56 
 
 
323 aa  242  6e-63  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013174  Jden_2401  binding-protein-dependent transport systems inner membrane component  44.03 
 
 
340 aa  241  9e-63  Jonesia denitrificans DSM 20603  Bacteria  normal  0.0135356  normal 
 
 
-
 
NC_013411  GYMC61_2708  binding-protein-dependent transport systems inner membrane component  39.61 
 
 
315 aa  240  2e-62  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010001  Cphy_0860  binding-protein-dependent transport systems inner membrane component  41.95 
 
 
313 aa  235  6e-61  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013515  Smon_0121  binding-protein-dependent transport systems inner membrane component  38.72 
 
 
298 aa  235  8e-61  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_010001  Cphy_0664  binding-protein-dependent transport systems inner membrane component  38.32 
 
 
324 aa  234  1.0000000000000001e-60  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.00000000161767  n/a   
 
 
-
 
NC_013946  Mrub_0281  binding-protein-dependent transport systems inner membrane component  43.27 
 
 
315 aa  231  1e-59  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.949472 
 
 
-
 
NC_010001  Cphy_3242  binding-protein-dependent transport systems inner membrane component  38.31 
 
 
310 aa  230  3e-59  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0946  binding-protein-dependent transport systems inner membrane component  36.06 
 
 
322 aa  229  4e-59  Clostridium cellulolyticum H10  Bacteria  normal  0.0463053  n/a   
 
 
-
 
NC_012034  Athe_2553  binding-protein-dependent transport systems inner membrane component  40.97 
 
 
308 aa  228  1e-58  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.336984  n/a   
 
 
-
 
NC_011661  Dtur_0312  binding-protein-dependent transport systems inner membrane component  38.91 
 
 
304 aa  226  5.0000000000000005e-58  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3113  binding-protein-dependent transport systems inner membrane component  38.8 
 
 
325 aa  223  4e-57  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013172  Bfae_29230  ABC-type polysaccharide transport system, permease component  37.42 
 
 
334 aa  223  4.9999999999999996e-57  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3315  binding-protein-dependent transport systems inner membrane component  39.12 
 
 
324 aa  221  9e-57  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0773  binding-protein-dependent transport systems inner membrane component  36.33 
 
 
311 aa  221  9.999999999999999e-57  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000000374508  n/a   
 
 
-
 
NC_010001  Cphy_0485  binding-protein-dependent transport systems inner membrane component  36.92 
 
 
326 aa  219  7e-56  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1872  binding-protein-dependent transport systems inner membrane component  38.72 
 
 
326 aa  218  7.999999999999999e-56  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.095702  normal  0.124231 
 
 
-
 
NC_012034  Athe_2054  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
304 aa  218  1e-55  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_5564  binding-protein-dependent transport systems inner membrane component  36.05 
 
 
346 aa  215  8e-55  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.271716  normal  0.315175 
 
 
-
 
NC_012669  Bcav_4041  binding-protein-dependent transport systems inner membrane component  38.93 
 
 
330 aa  214  1.9999999999999998e-54  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_1916  binding-protein-dependent transport systems inner membrane component  36.48 
 
 
320 aa  214  1.9999999999999998e-54  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00000481644  n/a   
 
 
-
 
NC_012034  Athe_0850  binding-protein-dependent transport systems inner membrane component  36.86 
 
 
312 aa  210  3e-53  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.3931  n/a   
 
 
-
 
NC_010001  Cphy_3209  binding-protein-dependent transport systems inner membrane component  36.91 
 
 
319 aa  205  9e-52  Clostridium phytofermentans ISDg  Bacteria  normal  0.24552  n/a   
 
 
-
 
NC_011898  Ccel_0143  binding-protein-dependent transport systems inner membrane component  39.64 
 
 
318 aa  204  2e-51  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_1992  binding-protein-dependent transport systems inner membrane component  36.86 
 
 
327 aa  202  4e-51  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1253  binding-protein-dependent transport systems inner membrane component  39.38 
 
 
300 aa  202  7e-51  Clostridium cellulolyticum H10  Bacteria  normal  0.601892  n/a   
 
 
-
 
NC_013595  Sros_1292  transmembrane lipoprotein  33.23 
 
 
340 aa  196  6e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.817448 
 
 
-
 
NC_007333  Tfu_1610  putative transport system integral membrane protein  33.65 
 
 
341 aa  194  2e-48  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0151  binding-protein-dependent transport systems inner membrane component  36.86 
 
 
323 aa  193  4e-48  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4681  binding-protein-dependent transport systems inner membrane component  34.22 
 
 
310 aa  192  6e-48  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00295974  normal  0.937314 
 
 
-
 
NC_009664  Krad_0410  binding-protein-dependent transport systems inner membrane component  39.71 
 
 
331 aa  191  1e-47  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0705285 
 
 
-
 
NC_012669  Bcav_1581  binding-protein-dependent transport systems inner membrane component  34.36 
 
 
305 aa  190  2.9999999999999997e-47  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.595775  normal 
 
 
-
 
NC_010001  Cphy_3569  binding-protein-dependent transport systems inner membrane component  31.37 
 
 
324 aa  190  2.9999999999999997e-47  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2732  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
316 aa  187  2e-46  Clostridium phytofermentans ISDg  Bacteria  normal  0.0340422  n/a   
 
 
-
 
NC_013521  Sked_10090  ABC-type polysaccharide transport system, permease component  36.68 
 
 
331 aa  185  1.0000000000000001e-45  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_6722  binding-protein-dependent transport systems inner membrane component  37.54 
 
 
350 aa  184  2.0000000000000003e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.14041  normal 
 
 
-
 
NC_013521  Sked_05740  ABC-type polysaccharide transport system, permease component  35.84 
 
 
346 aa  183  3e-45  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.767315  normal 
 
 
-
 
NC_013131  Caci_4937  binding-protein-dependent transport systems inner membrane component  34.51 
 
 
339 aa  183  4.0000000000000006e-45  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00187301  normal 
 
 
-
 
NC_013947  Snas_5753  binding-protein-dependent transport systems inner membrane component  36.75 
 
 
329 aa  181  2e-44  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.623467  normal 
 
 
-
 
NC_012669  Bcav_1320  binding-protein-dependent transport systems inner membrane component  34.91 
 
 
327 aa  179  4.999999999999999e-44  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2171  binding-protein-dependent transport systems inner membrane component  35.67 
 
 
324 aa  174  2.9999999999999996e-42  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_04190  ABC-type polysaccharide transport system, permease component  32.25 
 
 
313 aa  173  5e-42  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_1768  binding-protein-dependent transport systems inner membrane component  34.27 
 
 
320 aa  171  1e-41  Jonesia denitrificans DSM 20603  Bacteria  normal  0.0555688  normal  0.200854 
 
 
-
 
NC_013530  Xcel_1190  binding-protein-dependent transport systems inner membrane component  35.48 
 
 
292 aa  168  1e-40  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0859971  n/a   
 
 
-
 
NC_013131  Caci_0128  binding-protein-dependent transport systems inner membrane component  34.2 
 
 
319 aa  162  7e-39  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013171  Apre_0144  binding-protein-dependent transport systems inner membrane component  29.94 
 
 
333 aa  161  1e-38  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2785  binding-protein-dependent transport systems inner membrane component  33.93 
 
 
351 aa  160  3e-38  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1547  binding-protein-dependent transport systems inner membrane component  30.79 
 
 
478 aa  160  4e-38  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.0000265018  n/a   
 
 
-
 
NC_012669  Bcav_1438  binding-protein-dependent transport systems inner membrane component  34.93 
 
 
335 aa  159  7e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.650576  normal 
 
 
-
 
NC_011898  Ccel_2456  binding-protein-dependent transport systems inner membrane component  32.21 
 
 
316 aa  158  1e-37  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3386  binding-protein-dependent transport systems inner membrane component  34.18 
 
 
332 aa  157  2e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_2339  ABC transporter, permease protein  30.94 
 
 
322 aa  157  3e-37  Clostridium perfringens ATCC 13124  Bacteria  normal  0.552195  n/a   
 
 
-
 
NC_008262  CPR_2051  sugar transport system (permease) (binding protein dependent transporter)  31.27 
 
 
308 aa  157  3e-37  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_13600  ABC-type polysaccharide transport system, permease component  33.88 
 
 
332 aa  157  3e-37  Brachybacterium faecium DSM 4810  Bacteria  normal  0.248364  n/a   
 
 
-
 
NC_010001  Cphy_0695  binding-protein-dependent transport systems inner membrane component  32.17 
 
 
288 aa  154  2.9999999999999998e-36  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.0000207262  n/a   
 
 
-
 
NC_010001  Cphy_2571  binding-protein-dependent transport systems inner membrane component  31.85 
 
 
321 aa  152  8.999999999999999e-36  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0595  binding-protein-dependent transport systems inner membrane component  31.29 
 
 
313 aa  150  3e-35  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1709  binding-protein-dependent transport systems inner membrane component  27.56 
 
 
307 aa  135  8e-31  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1715  binding-protein-dependent transport systems inner membrane component  28.04 
 
 
316 aa  134  3e-30  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  32.08 
 
 
309 aa  127  2.0000000000000002e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_007413  Ava_0563  binding-protein dependent transport system inner membrane protein  30.86 
 
 
294 aa  122  9.999999999999999e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  0.22835  normal  0.0558608 
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  32.37 
 
 
317 aa  121  1.9999999999999998e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  28.21 
 
 
299 aa  120  3.9999999999999996e-26  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0944  binding-protein-dependent transport systems inner membrane component  32.03 
 
 
290 aa  119  6e-26  Cyanothece sp. PCC 7425  Bacteria  normal  0.120711  normal  0.307929 
 
 
-
 
NC_012669  Bcav_1699  binding-protein-dependent transport systems inner membrane component  28.52 
 
 
315 aa  119  9e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.258357  normal 
 
 
-
 
NC_010465  YPK_3708  binding-protein-dependent transport systems inner membrane component  26.51 
 
 
294 aa  118  9.999999999999999e-26  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A4017  carbohydrate ABC transporter permease  26.51 
 
 
294 aa  118  9.999999999999999e-26  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_3574  carbohydrate ABC transporter permease  26.51 
 
 
294 aa  118  9.999999999999999e-26  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0699  binding-protein-dependent transport systems inner membrane component  28.52 
 
 
291 aa  118  1.9999999999999998e-25  Dickeya dadantii Ech703  Bacteria  normal  0.216687  n/a   
 
 
-
 
NC_012669  Bcav_0321  binding-protein-dependent transport systems inner membrane component  29.67 
 
 
316 aa  117  1.9999999999999998e-25  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8465  binding-protein-dependent transport systems inner membrane component  33.04 
 
 
315 aa  113  4.0000000000000004e-24  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.511569  normal  0.0740219 
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  29.58 
 
 
311 aa  113  4.0000000000000004e-24  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_010001  Cphy_3316  binding-protein-dependent transport systems inner membrane component  28.92 
 
 
298 aa  112  9e-24  Clostridium phytofermentans ISDg  Bacteria  normal  0.164411  n/a   
 
 
-
 
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