More than 300 homologs were found in PanDaTox collection
for query gene Cphy_1547 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_1547  binding-protein-dependent transport systems inner membrane component  100 
 
 
478 aa  957    Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.0000265018  n/a   
 
 
-
 
NC_011898  Ccel_2456  binding-protein-dependent transport systems inner membrane component  55.74 
 
 
316 aa  348  1e-94  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1190  binding-protein-dependent transport systems inner membrane component  52.16 
 
 
292 aa  300  5e-80  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0859971  n/a   
 
 
-
 
NC_012034  Athe_2553  binding-protein-dependent transport systems inner membrane component  38.98 
 
 
308 aa  216  9e-55  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.336984  n/a   
 
 
-
 
NC_012034  Athe_2054  binding-protein-dependent transport systems inner membrane component  37.72 
 
 
304 aa  213  7e-54  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0312  binding-protein-dependent transport systems inner membrane component  34.74 
 
 
304 aa  210  6e-53  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0151  binding-protein-dependent transport systems inner membrane component  39.58 
 
 
323 aa  207  3e-52  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3209  binding-protein-dependent transport systems inner membrane component  35.64 
 
 
319 aa  199  7e-50  Clostridium phytofermentans ISDg  Bacteria  normal  0.24552  n/a   
 
 
-
 
NC_012034  Athe_0085  binding-protein-dependent transport systems inner membrane component  35.69 
 
 
318 aa  195  1e-48  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.0126141  n/a   
 
 
-
 
NC_010001  Cphy_0860  binding-protein-dependent transport systems inner membrane component  35.57 
 
 
313 aa  188  2e-46  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3315  binding-protein-dependent transport systems inner membrane component  37.46 
 
 
324 aa  185  2.0000000000000003e-45  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0850  binding-protein-dependent transport systems inner membrane component  32.56 
 
 
312 aa  177  3e-43  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.3931  n/a   
 
 
-
 
NC_010001  Cphy_2656  binding-protein-dependent transport systems inner membrane component  35.4 
 
 
315 aa  177  5e-43  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2785  binding-protein-dependent transport systems inner membrane component  36.33 
 
 
351 aa  176  8e-43  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3113  binding-protein-dependent transport systems inner membrane component  35.92 
 
 
325 aa  175  1.9999999999999998e-42  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_4041  binding-protein-dependent transport systems inner membrane component  33.23 
 
 
330 aa  175  1.9999999999999998e-42  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_0773  binding-protein-dependent transport systems inner membrane component  33.77 
 
 
311 aa  173  5.999999999999999e-42  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000000374508  n/a   
 
 
-
 
NC_013172  Bfae_04190  ABC-type polysaccharide transport system, permease component  32.57 
 
 
313 aa  172  1e-41  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0946  binding-protein-dependent transport systems inner membrane component  33.55 
 
 
322 aa  170  7e-41  Clostridium cellulolyticum H10  Bacteria  normal  0.0463053  n/a   
 
 
-
 
NC_013172  Bfae_29230  ABC-type polysaccharide transport system, permease component  33.33 
 
 
334 aa  169  1e-40  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1119  binding-protein-dependent transport systems inner membrane component  32.17 
 
 
318 aa  169  1e-40  Clostridium phytofermentans ISDg  Bacteria  normal  0.0757482  n/a   
 
 
-
 
NC_010001  Cphy_0339  binding-protein-dependent transport systems inner membrane component  34.48 
 
 
333 aa  168  2e-40  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2331  binding-protein-dependent transport systems inner membrane component  30.61 
 
 
317 aa  166  5.9999999999999996e-40  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013515  Smon_0121  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
298 aa  161  2e-38  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_013525  Tter_1103  binding-protein-dependent transport systems inner membrane component  31.33 
 
 
323 aa  160  4e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012034  Athe_2093  binding-protein-dependent transport systems inner membrane component  31.47 
 
 
321 aa  160  5e-38  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.000000000858649  n/a   
 
 
-
 
NC_013530  Xcel_2660  binding-protein-dependent transport systems inner membrane component  30.03 
 
 
335 aa  160  5e-38  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.245622  n/a   
 
 
-
 
NC_013521  Sked_02840  ABC-type polysaccharide transport system, permease component  30.79 
 
 
324 aa  159  7e-38  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.840845  normal 
 
 
-
 
NC_014211  Ndas_5564  binding-protein-dependent transport systems inner membrane component  33.99 
 
 
346 aa  159  1e-37  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.271716  normal  0.315175 
 
 
-
 
NC_012034  Athe_2031  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
315 aa  158  2e-37  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2708  binding-protein-dependent transport systems inner membrane component  32.21 
 
 
315 aa  157  4e-37  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013174  Jden_2401  binding-protein-dependent transport systems inner membrane component  29.13 
 
 
340 aa  156  7e-37  Jonesia denitrificans DSM 20603  Bacteria  normal  0.0135356  normal 
 
 
-
 
NC_007333  Tfu_1610  putative transport system integral membrane protein  31.91 
 
 
341 aa  155  1e-36  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2732  binding-protein-dependent transport systems inner membrane component  34.11 
 
 
316 aa  155  1e-36  Clostridium phytofermentans ISDg  Bacteria  normal  0.0340422  n/a   
 
 
-
 
NC_012669  Bcav_3325  binding-protein-dependent transport systems inner membrane component  31.25 
 
 
334 aa  155  2e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.491227  normal  0.0603947 
 
 
-
 
NC_014151  Cfla_2805  binding-protein-dependent transport systems inner membrane component  28.39 
 
 
339 aa  154  2.9999999999999998e-36  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0077711 
 
 
-
 
NC_014165  Tbis_1563  binding-protein-dependent transporter inner membrane component  28.52 
 
 
331 aa  154  4e-36  Thermobispora bispora DSM 43833  Bacteria  normal  0.117544  normal 
 
 
-
 
NC_010001  Cphy_0393  binding-protein-dependent transport systems inner membrane component  28.53 
 
 
326 aa  152  1e-35  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0664  binding-protein-dependent transport systems inner membrane component  30.98 
 
 
324 aa  151  2e-35  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.00000000161767  n/a   
 
 
-
 
NC_010001  Cphy_2192  binding-protein-dependent transport systems inner membrane component  30.65 
 
 
307 aa  151  2e-35  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_0761  ABC-type polysaccharide transport system, permease component  28.81 
 
 
316 aa  151  3e-35  Lactococcus lactis subsp. cremoris SK11  Bacteria  hitchhiker  0.000797199  n/a   
 
 
-
 
NC_010001  Cphy_3242  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
310 aa  150  3e-35  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0410  binding-protein-dependent transport systems inner membrane component  31.8 
 
 
331 aa  150  6e-35  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0705285 
 
 
-
 
NC_013131  Caci_3819  binding-protein-dependent transport systems inner membrane component  28.71 
 
 
322 aa  149  7e-35  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.595689  normal  0.292651 
 
 
-
 
NC_010001  Cphy_3569  binding-protein-dependent transport systems inner membrane component  31.17 
 
 
324 aa  149  1.0000000000000001e-34  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0367  binding-protein-dependent transport systems inner membrane component  27.87 
 
 
332 aa  148  2.0000000000000003e-34  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_20490  ABC-type polysaccharide transport system, permease component  28.05 
 
 
326 aa  147  3e-34  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.086583  normal  0.344725 
 
 
-
 
NC_013595  Sros_1292  transmembrane lipoprotein  32.54 
 
 
340 aa  147  3e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.817448 
 
 
-
 
NC_011898  Ccel_0143  binding-protein-dependent transport systems inner membrane component  32.45 
 
 
318 aa  147  3e-34  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0485  binding-protein-dependent transport systems inner membrane component  30.47 
 
 
326 aa  147  4.0000000000000006e-34  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4937  binding-protein-dependent transport systems inner membrane component  33.57 
 
 
339 aa  147  5e-34  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00187301  normal 
 
 
-
 
NC_014151  Cfla_3000  binding-protein-dependent transport systems inner membrane component  30.47 
 
 
328 aa  146  7.0000000000000006e-34  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.999287 
 
 
-
 
NC_013093  Amir_1981  binding-protein-dependent transport systems inner membrane component  27.06 
 
 
332 aa  146  8.000000000000001e-34  Actinosynnema mirum DSM 43827  Bacteria  normal  0.837533  n/a   
 
 
-
 
NC_013172  Bfae_01640  ABC-type polysaccharide transport system, permease component  26.91 
 
 
324 aa  145  1e-33  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_05740  ABC-type polysaccharide transport system, permease component  36.3 
 
 
346 aa  145  2e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.767315  normal 
 
 
-
 
NC_012669  Bcav_0059  binding-protein-dependent transport systems inner membrane component  27.51 
 
 
320 aa  144  3e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.542171  normal  0.242962 
 
 
-
 
NC_013521  Sked_33150  ABC-type polysaccharide transport system, permease component  27.24 
 
 
336 aa  144  3e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.96599 
 
 
-
 
NC_010001  Cphy_1916  binding-protein-dependent transport systems inner membrane component  27.3 
 
 
320 aa  143  8e-33  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00000481644  n/a   
 
 
-
 
NC_013521  Sked_10090  ABC-type polysaccharide transport system, permease component  30.41 
 
 
331 aa  141  1.9999999999999998e-32  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1581  binding-protein-dependent transport systems inner membrane component  30.27 
 
 
305 aa  142  1.9999999999999998e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.595775  normal 
 
 
-
 
NC_013131  Caci_4681  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
310 aa  142  1.9999999999999998e-32  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00295974  normal  0.937314 
 
 
-
 
NC_011898  Ccel_1014  binding-protein-dependent transport systems inner membrane component  34.42 
 
 
323 aa  141  1.9999999999999998e-32  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0695  binding-protein-dependent transport systems inner membrane component  31.85 
 
 
288 aa  141  1.9999999999999998e-32  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.0000207262  n/a   
 
 
-
 
NC_012669  Bcav_1872  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
326 aa  142  1.9999999999999998e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.095702  normal  0.124231 
 
 
-
 
NC_008541  Arth_0428  binding-protein-dependent transport systems inner membrane component  28.34 
 
 
326 aa  141  3e-32  Arthrobacter sp. FB24  Bacteria  normal  0.278038  n/a   
 
 
-
 
NC_013131  Caci_0128  binding-protein-dependent transport systems inner membrane component  31.8 
 
 
319 aa  140  3.9999999999999997e-32  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1320  binding-protein-dependent transport systems inner membrane component  30.72 
 
 
327 aa  140  3.9999999999999997e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3386  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
332 aa  139  7.999999999999999e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_17870  ABC-type polysaccharide transport system, permease component  29.33 
 
 
327 aa  137  4e-31  Brachybacterium faecium DSM 4810  Bacteria  normal  0.246834  n/a   
 
 
-
 
NC_013174  Jden_1768  binding-protein-dependent transport systems inner membrane component  31.34 
 
 
320 aa  137  5e-31  Jonesia denitrificans DSM 20603  Bacteria  normal  0.0555688  normal  0.200854 
 
 
-
 
NC_013171  Apre_0144  binding-protein-dependent transport systems inner membrane component  30.7 
 
 
333 aa  137  5e-31  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_6722  binding-protein-dependent transport systems inner membrane component  33.8 
 
 
350 aa  136  8e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.14041  normal 
 
 
-
 
NC_010001  Cphy_0929  binding-protein-dependent transport systems inner membrane component  29.61 
 
 
330 aa  136  9e-31  Clostridium phytofermentans ISDg  Bacteria  normal  0.293677  n/a   
 
 
-
 
NC_013947  Snas_5753  binding-protein-dependent transport systems inner membrane component  32.72 
 
 
329 aa  135  1.9999999999999998e-30  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.623467  normal 
 
 
-
 
NC_013172  Bfae_13600  ABC-type polysaccharide transport system, permease component  30.59 
 
 
332 aa  132  2.0000000000000002e-29  Brachybacterium faecium DSM 4810  Bacteria  normal  0.248364  n/a   
 
 
-
 
NC_013526  Tter_1992  binding-protein-dependent transport systems inner membrane component  32.2 
 
 
327 aa  131  3e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2171  binding-protein-dependent transport systems inner membrane component  31.29 
 
 
324 aa  129  8.000000000000001e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0281  binding-protein-dependent transport systems inner membrane component  30.47 
 
 
315 aa  128  2.0000000000000002e-28  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.949472 
 
 
-
 
NC_011898  Ccel_1253  binding-protein-dependent transport systems inner membrane component  31.12 
 
 
300 aa  127  6e-28  Clostridium cellulolyticum H10  Bacteria  normal  0.601892  n/a   
 
 
-
 
NC_012034  Athe_0595  binding-protein-dependent transport systems inner membrane component  32.55 
 
 
313 aa  124  6e-27  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1438  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
335 aa  120  3.9999999999999996e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.650576  normal 
 
 
-
 
NC_008261  CPF_2339  ABC transporter, permease protein  29.32 
 
 
322 aa  115  2.0000000000000002e-24  Clostridium perfringens ATCC 13124  Bacteria  normal  0.552195  n/a   
 
 
-
 
NC_008262  CPR_2051  sugar transport system (permease) (binding protein dependent transporter)  29.11 
 
 
308 aa  112  1.0000000000000001e-23  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1709  binding-protein-dependent transport systems inner membrane component  30.99 
 
 
307 aa  108  1e-22  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1715  binding-protein-dependent transport systems inner membrane component  26.73 
 
 
316 aa  109  1e-22  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2571  binding-protein-dependent transport systems inner membrane component  28.48 
 
 
321 aa  107  3e-22  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  29.37 
 
 
306 aa  90.5  6e-17  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_0943  binding-protein-dependent transport systems inner membrane component  26.73 
 
 
312 aa  90.1  7e-17  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.301949 
 
 
-
 
NC_010001  Cphy_2465  binding-protein-dependent transport systems inner membrane component  29.55 
 
 
324 aa  90.1  7e-17  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000591841  n/a   
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  26.55 
 
 
309 aa  88.6  2e-16  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  27.22 
 
 
295 aa  88.2  3e-16  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0175  binding-protein-dependent transport systems inner membrane component  28.7 
 
 
297 aa  84.3  0.000000000000004  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0524  binding-protein-dependent transport systems inner membrane component  27.82 
 
 
303 aa  83.6  0.000000000000007  Petrotoga mobilis SJ95  Bacteria  normal  0.693678  n/a   
 
 
-
 
NC_008346  Swol_0404  ABC sugar transporter, inner membrane subunit  30.43 
 
 
294 aa  80.9  0.00000000000004  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0754  binding-protein-dependent transport systems inner membrane component  27.08 
 
 
324 aa  79.3  0.0000000000001  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000204062  n/a   
 
 
-
 
NC_012669  Bcav_2833  binding-protein-dependent transport systems inner membrane component  26.03 
 
 
319 aa  79.7  0.0000000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0200859  normal 
 
 
-
 
NC_013947  Snas_0757  binding-protein-dependent transport systems inner membrane component  32.06 
 
 
296 aa  79.7  0.0000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_3316  binding-protein-dependent transport systems inner membrane component  29.33 
 
 
298 aa  79.7  0.0000000000001  Clostridium phytofermentans ISDg  Bacteria  normal  0.164411  n/a   
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  26.23 
 
 
299 aa  79  0.0000000000002  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_011884  Cyan7425_0944  binding-protein-dependent transport systems inner membrane component  27.23 
 
 
290 aa  78.2  0.0000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  0.120711  normal  0.307929 
 
 
-
 
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