Gene Amir_1981 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_1981 
Symbol 
ID8326166 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp2196177 
End bp2197175 
Gene Length999 bp 
Protein Length332 aa 
Translation table11 
GC content69% 
IMG OID644942530 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_003099775 
Protein GI256376115 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG4209] ABC-type polysaccharide transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.837533 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGCCG CACCGGAGAC CGCCCTCGTC GCCGAGACGG TGGCCGAGGC GAGGCCGAGG 
CGCGGGAAGT GGCCGGGCAG GCGGCCCGCC GGCAGGCGGG AGACCTGGCG GCGGGCGCTG 
CGCCGGGACT GGCAGCTGTA CTCGCTGGCC GTGCTGCCGC TGCTGTTCTT CCTGGTGTTC 
CGCTACCTGC CCATGCTGGG CAACGTGATC GCGTTCCGCC GGTTCGTGCC GGGCGGCAGC 
GTGTTCGGCG AGGCGTGGGT CGGCCTGCGG TACGTGGAGA TGTTCGTCAA GGACCCCAAC 
TTCTGGTCGG TGTTCGGCAA CACCGTCGTG CTGGGCGCGC TGACCCTGCT GTTCTGCTTC 
CCGCTGCCGA TCGTGCTGGC GCTGATGCTC AACGAGGTGC GCTCGCGCTA CTTCAAGCGG 
TTCGTGCAGA CGGTGGCGTA CCTGCCGCAC TTCCTGTCGA TCGTGATCGT GGCGGGCATG 
GTGATGCAGC TGGTGTCCGT GGAGGGCACG GTCAACCAGG TCACCCGGCT GTTCGGCGCG 
GACGCCGTGC CGTTCATCCA GGCCCCGGAC TGGTTCCGCA CGATCTACGT GTCGTCCGAG 
GTGTGGCAGA CCGTCGGCTG GGGCACGATC CTGTACCTGG CCGCGCTGAC GACCGTGGAC 
GAGCAGCTGT ACGAGGCGGC CCGGATCGAC GGGGCGAGCC GGTGGCGGCA GACCTGGCAC 
ATCACGCTGC CGGGCGTCCG GCCGACGATG GTGACGCTGC TGATCCTGAA CACCGGCACG 
TTCATGGCGG TGGGGTTCGA GAAGATCCTG CTGCTGCAGA ACCCGCTGAC CTACCCGACC 
GGCGACGTGG TGTCGACCTA CCTGTACCGG GTGGGCCTGG TGTCCAACAA CTTCAGCTAC 
GCCGCCGCGA TCGGCCTGTT CGAGGCGCTG GTGGGGCTGG TGCTGATCCT GTCCGCGAAC 
GCGATCTCGC GCCGAGCGGT GGGGACGAGC CTGTGGTGA
 
Protein sequence
MTAAPETALV AETVAEARPR RGKWPGRRPA GRRETWRRAL RRDWQLYSLA VLPLLFFLVF 
RYLPMLGNVI AFRRFVPGGS VFGEAWVGLR YVEMFVKDPN FWSVFGNTVV LGALTLLFCF 
PLPIVLALML NEVRSRYFKR FVQTVAYLPH FLSIVIVAGM VMQLVSVEGT VNQVTRLFGA 
DAVPFIQAPD WFRTIYVSSE VWQTVGWGTI LYLAALTTVD EQLYEAARID GASRWRQTWH 
ITLPGVRPTM VTLLILNTGT FMAVGFEKIL LLQNPLTYPT GDVVSTYLYR VGLVSNNFSY 
AAAIGLFEAL VGLVLILSAN AISRRAVGTS LW