More than 300 homologs were found in PanDaTox collection
for query gene Jden_2401 on replicon NC_013174
Organism: Jonesia denitrificans DSM 20603



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013174  Jden_2401  binding-protein-dependent transport systems inner membrane component  100 
 
 
340 aa  684    Jonesia denitrificans DSM 20603  Bacteria  normal  0.0135356  normal 
 
 
-
 
NC_013521  Sked_33150  ABC-type polysaccharide transport system, permease component  73.53 
 
 
336 aa  498  1e-140  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.96599 
 
 
-
 
NC_013093  Amir_1981  binding-protein-dependent transport systems inner membrane component  68.62 
 
 
332 aa  485  1e-136  Actinosynnema mirum DSM 43827  Bacteria  normal  0.837533  n/a   
 
 
-
 
NC_013172  Bfae_01640  ABC-type polysaccharide transport system, permease component  73.83 
 
 
324 aa  478  1e-134  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1563  binding-protein-dependent transporter inner membrane component  69.79 
 
 
331 aa  480  1e-134  Thermobispora bispora DSM 43833  Bacteria  normal  0.117544  normal 
 
 
-
 
NC_012669  Bcav_3325  binding-protein-dependent transport systems inner membrane component  72.86 
 
 
334 aa  476  1e-133  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.491227  normal  0.0603947 
 
 
-
 
NC_014151  Cfla_2805  binding-protein-dependent transport systems inner membrane component  68.84 
 
 
339 aa  477  1e-133  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0077711 
 
 
-
 
NC_013131  Caci_3819  binding-protein-dependent transport systems inner membrane component  70.85 
 
 
322 aa  465  9.999999999999999e-131  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.595689  normal  0.292651 
 
 
-
 
NC_013521  Sked_20490  ABC-type polysaccharide transport system, permease component  70.9 
 
 
326 aa  460  9.999999999999999e-129  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.086583  normal  0.344725 
 
 
-
 
NC_014151  Cfla_3000  binding-protein-dependent transport systems inner membrane component  76.52 
 
 
328 aa  454  1e-127  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.999287 
 
 
-
 
NC_013530  Xcel_0367  binding-protein-dependent transport systems inner membrane component  71.14 
 
 
332 aa  422  1e-117  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2660  binding-protein-dependent transport systems inner membrane component  64.31 
 
 
335 aa  396  1e-109  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.245622  n/a   
 
 
-
 
NC_010001  Cphy_2656  binding-protein-dependent transport systems inner membrane component  52.55 
 
 
315 aa  352  5e-96  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1119  binding-protein-dependent transport systems inner membrane component  47.13 
 
 
318 aa  321  9.999999999999999e-87  Clostridium phytofermentans ISDg  Bacteria  normal  0.0757482  n/a   
 
 
-
 
NC_012034  Athe_2331  binding-protein-dependent transport systems inner membrane component  45.98 
 
 
317 aa  302  5.000000000000001e-81  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_29230  ABC-type polysaccharide transport system, permease component  44.24 
 
 
334 aa  281  8.000000000000001e-75  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2093  binding-protein-dependent transport systems inner membrane component  42.04 
 
 
321 aa  278  1e-73  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.000000000858649  n/a   
 
 
-
 
NC_008541  Arth_0428  binding-protein-dependent transport systems inner membrane component  47.6 
 
 
326 aa  276  3e-73  Arthrobacter sp. FB24  Bacteria  normal  0.278038  n/a   
 
 
-
 
NC_013172  Bfae_17870  ABC-type polysaccharide transport system, permease component  43.93 
 
 
327 aa  268  7e-71  Brachybacterium faecium DSM 4810  Bacteria  normal  0.246834  n/a   
 
 
-
 
NC_012034  Athe_2031  binding-protein-dependent transport systems inner membrane component  42.77 
 
 
315 aa  268  8.999999999999999e-71  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0339  binding-protein-dependent transport systems inner membrane component  42.36 
 
 
333 aa  265  1e-69  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013515  Smon_0121  binding-protein-dependent transport systems inner membrane component  43.2 
 
 
298 aa  263  3e-69  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_013521  Sked_02840  ABC-type polysaccharide transport system, permease component  41.43 
 
 
324 aa  263  4e-69  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.840845  normal 
 
 
-
 
NC_011661  Dtur_0312  binding-protein-dependent transport systems inner membrane component  47.35 
 
 
304 aa  263  4.999999999999999e-69  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0946  binding-protein-dependent transport systems inner membrane component  39.18 
 
 
322 aa  261  1e-68  Clostridium cellulolyticum H10  Bacteria  normal  0.0463053  n/a   
 
 
-
 
NC_011886  Achl_3113  binding-protein-dependent transport systems inner membrane component  42.22 
 
 
325 aa  260  2e-68  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_010001  Cphy_0664  binding-protein-dependent transport systems inner membrane component  41.72 
 
 
324 aa  257  2e-67  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.00000000161767  n/a   
 
 
-
 
NC_010001  Cphy_2192  binding-protein-dependent transport systems inner membrane component  37.22 
 
 
307 aa  258  2e-67  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2054  binding-protein-dependent transport systems inner membrane component  46.29 
 
 
304 aa  257  2e-67  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0059  binding-protein-dependent transport systems inner membrane component  41.1 
 
 
320 aa  257  3e-67  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.542171  normal  0.242962 
 
 
-
 
NC_008541  Arth_3315  binding-protein-dependent transport systems inner membrane component  45.14 
 
 
324 aa  257  3e-67  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3242  binding-protein-dependent transport systems inner membrane component  41.16 
 
 
310 aa  256  3e-67  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2708  binding-protein-dependent transport systems inner membrane component  43.36 
 
 
315 aa  254  1.0000000000000001e-66  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012034  Athe_0085  binding-protein-dependent transport systems inner membrane component  42.27 
 
 
318 aa  254  2.0000000000000002e-66  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.0126141  n/a   
 
 
-
 
NC_013525  Tter_1103  binding-protein-dependent transport systems inner membrane component  40.6 
 
 
323 aa  253  4.0000000000000004e-66  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014211  Ndas_5564  binding-protein-dependent transport systems inner membrane component  39.09 
 
 
346 aa  252  7e-66  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.271716  normal  0.315175 
 
 
-
 
NC_010001  Cphy_0860  binding-protein-dependent transport systems inner membrane component  39.37 
 
 
313 aa  250  3e-65  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0929  binding-protein-dependent transport systems inner membrane component  41.21 
 
 
330 aa  245  8e-64  Clostridium phytofermentans ISDg  Bacteria  normal  0.293677  n/a   
 
 
-
 
NC_010001  Cphy_0485  binding-protein-dependent transport systems inner membrane component  40.74 
 
 
326 aa  243  3.9999999999999997e-63  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_4041  binding-protein-dependent transport systems inner membrane component  40.76 
 
 
330 aa  237  2e-61  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_1916  binding-protein-dependent transport systems inner membrane component  43.4 
 
 
320 aa  237  2e-61  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00000481644  n/a   
 
 
-
 
NC_011898  Ccel_1014  binding-protein-dependent transport systems inner membrane component  38.67 
 
 
323 aa  236  6e-61  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_0761  ABC-type polysaccharide transport system, permease component  37.74 
 
 
316 aa  235  1.0000000000000001e-60  Lactococcus lactis subsp. cremoris SK11  Bacteria  hitchhiker  0.000797199  n/a   
 
 
-
 
NC_010001  Cphy_0773  binding-protein-dependent transport systems inner membrane component  39.26 
 
 
311 aa  232  7.000000000000001e-60  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000000374508  n/a   
 
 
-
 
NC_013526  Tter_1992  binding-protein-dependent transport systems inner membrane component  43.38 
 
 
327 aa  231  1e-59  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1253  binding-protein-dependent transport systems inner membrane component  43.54 
 
 
300 aa  231  2e-59  Clostridium cellulolyticum H10  Bacteria  normal  0.601892  n/a   
 
 
-
 
NC_012669  Bcav_1872  binding-protein-dependent transport systems inner membrane component  42.46 
 
 
326 aa  230  3e-59  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.095702  normal  0.124231 
 
 
-
 
NC_012669  Bcav_1320  binding-protein-dependent transport systems inner membrane component  39.3 
 
 
327 aa  228  1e-58  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_0151  binding-protein-dependent transport systems inner membrane component  39.62 
 
 
323 aa  227  2e-58  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2553  binding-protein-dependent transport systems inner membrane component  42.75 
 
 
308 aa  226  5.0000000000000005e-58  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.336984  n/a   
 
 
-
 
NC_013172  Bfae_04190  ABC-type polysaccharide transport system, permease component  39.41 
 
 
313 aa  224  1e-57  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1581  binding-protein-dependent transport systems inner membrane component  40.75 
 
 
305 aa  224  1e-57  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.595775  normal 
 
 
-
 
NC_010001  Cphy_0393  binding-protein-dependent transport systems inner membrane component  35.6 
 
 
326 aa  223  3e-57  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3209  binding-protein-dependent transport systems inner membrane component  38.51 
 
 
319 aa  223  4.9999999999999996e-57  Clostridium phytofermentans ISDg  Bacteria  normal  0.24552  n/a   
 
 
-
 
NC_013093  Amir_2171  binding-protein-dependent transport systems inner membrane component  38.76 
 
 
324 aa  221  1.9999999999999999e-56  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0281  binding-protein-dependent transport systems inner membrane component  41.73 
 
 
315 aa  220  1.9999999999999999e-56  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.949472 
 
 
-
 
NC_007333  Tfu_1610  putative transport system integral membrane protein  38.06 
 
 
341 aa  219  5e-56  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1292  transmembrane lipoprotein  40.89 
 
 
340 aa  218  7.999999999999999e-56  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.817448 
 
 
-
 
NC_012034  Athe_0850  binding-protein-dependent transport systems inner membrane component  41.81 
 
 
312 aa  219  7.999999999999999e-56  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.3931  n/a   
 
 
-
 
NC_013521  Sked_10090  ABC-type polysaccharide transport system, permease component  38.91 
 
 
331 aa  214  9.999999999999999e-55  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0410  binding-protein-dependent transport systems inner membrane component  39.86 
 
 
331 aa  214  1.9999999999999998e-54  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0705285 
 
 
-
 
NC_013131  Caci_4681  binding-protein-dependent transport systems inner membrane component  36 
 
 
310 aa  213  2.9999999999999995e-54  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00295974  normal  0.937314 
 
 
-
 
NC_013131  Caci_4937  binding-protein-dependent transport systems inner membrane component  36.5 
 
 
339 aa  209  6e-53  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00187301  normal 
 
 
-
 
NC_010001  Cphy_3569  binding-protein-dependent transport systems inner membrane component  32.82 
 
 
324 aa  209  8e-53  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2785  binding-protein-dependent transport systems inner membrane component  38.12 
 
 
351 aa  207  1e-52  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_13600  ABC-type polysaccharide transport system, permease component  39.48 
 
 
332 aa  208  1e-52  Brachybacterium faecium DSM 4810  Bacteria  normal  0.248364  n/a   
 
 
-
 
NC_013521  Sked_05740  ABC-type polysaccharide transport system, permease component  41.04 
 
 
346 aa  205  8e-52  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.767315  normal 
 
 
-
 
NC_011898  Ccel_0143  binding-protein-dependent transport systems inner membrane component  41.36 
 
 
318 aa  205  9e-52  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_1768  binding-protein-dependent transport systems inner membrane component  38.6 
 
 
320 aa  204  2e-51  Jonesia denitrificans DSM 20603  Bacteria  normal  0.0555688  normal  0.200854 
 
 
-
 
NC_010001  Cphy_2732  binding-protein-dependent transport systems inner membrane component  38.61 
 
 
316 aa  199  7e-50  Clostridium phytofermentans ISDg  Bacteria  normal  0.0340422  n/a   
 
 
-
 
NC_013131  Caci_0128  binding-protein-dependent transport systems inner membrane component  36.12 
 
 
319 aa  189  4e-47  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3386  binding-protein-dependent transport systems inner membrane component  40.07 
 
 
332 aa  189  5e-47  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_6722  binding-protein-dependent transport systems inner membrane component  36.24 
 
 
350 aa  189  9e-47  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.14041  normal 
 
 
-
 
NC_013947  Snas_5753  binding-protein-dependent transport systems inner membrane component  39.85 
 
 
329 aa  187  2e-46  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.623467  normal 
 
 
-
 
NC_010001  Cphy_0695  binding-protein-dependent transport systems inner membrane component  34.88 
 
 
288 aa  182  5.0000000000000004e-45  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.0000207262  n/a   
 
 
-
 
NC_013530  Xcel_1190  binding-protein-dependent transport systems inner membrane component  37.05 
 
 
292 aa  181  2e-44  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0859971  n/a   
 
 
-
 
NC_011898  Ccel_2456  binding-protein-dependent transport systems inner membrane component  33.12 
 
 
316 aa  176  7e-43  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1438  binding-protein-dependent transport systems inner membrane component  38.36 
 
 
335 aa  167  2.9999999999999998e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.650576  normal 
 
 
-
 
NC_008261  CPF_2339  ABC transporter, permease protein  32.7 
 
 
322 aa  165  9e-40  Clostridium perfringens ATCC 13124  Bacteria  normal  0.552195  n/a   
 
 
-
 
NC_010001  Cphy_1547  binding-protein-dependent transport systems inner membrane component  29.45 
 
 
478 aa  163  5.0000000000000005e-39  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.0000265018  n/a   
 
 
-
 
NC_008262  CPR_2051  sugar transport system (permease) (binding protein dependent transporter)  33.89 
 
 
308 aa  162  9e-39  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0144  binding-protein-dependent transport systems inner membrane component  28.39 
 
 
333 aa  159  5e-38  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1715  binding-protein-dependent transport systems inner membrane component  30.25 
 
 
316 aa  148  1.0000000000000001e-34  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2571  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
321 aa  134  1.9999999999999998e-30  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0595  binding-protein-dependent transport systems inner membrane component  32.53 
 
 
313 aa  131  2.0000000000000002e-29  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1709  binding-protein-dependent transport systems inner membrane component  29.68 
 
 
307 aa  125  9e-28  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  32.05 
 
 
300 aa  121  1.9999999999999998e-26  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0944  binding-protein-dependent transport systems inner membrane component  30.47 
 
 
290 aa  117  3.9999999999999997e-25  Cyanothece sp. PCC 7425  Bacteria  normal  0.120711  normal  0.307929 
 
 
-
 
NC_007413  Ava_0563  binding-protein dependent transport system inner membrane protein  31 
 
 
294 aa  115  8.999999999999998e-25  Anabaena variabilis ATCC 29413  Bacteria  normal  0.22835  normal  0.0558608 
 
 
-
 
NC_013530  Xcel_0064  binding-protein-dependent transport systems inner membrane component  29.35 
 
 
317 aa  115  1.0000000000000001e-24  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  31.29 
 
 
309 aa  114  3e-24  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  29.77 
 
 
309 aa  112  7.000000000000001e-24  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_013595  Sros_5408  carbohydrate ABC transporter membrane protein 1, CUT1 family  32.77 
 
 
305 aa  112  8.000000000000001e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0321  binding-protein-dependent transport systems inner membrane component  29.14 
 
 
316 aa  110  3e-23  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_29020  carbohydrate ABC transporter membrane protein  34.85 
 
 
275 aa  109  8.000000000000001e-23  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0409  binding-protein-dependent transport systems inner membrane component  32.95 
 
 
300 aa  108  9.000000000000001e-23  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4872  binding-protein-dependent transport systems inner membrane component  30.13 
 
 
310 aa  107  2e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.181942  normal  0.51159 
 
 
-
 
NC_008025  Dgeo_1168  binding-protein-dependent transport systems inner membrane component  31.06 
 
 
310 aa  107  3e-22  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.155614  normal 
 
 
-
 
NC_009921  Franean1_5460  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
334 aa  105  1e-21  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008010  Dgeo_2860  binding-protein-dependent transport systems inner membrane component  29.6 
 
 
322 aa  104  2e-21  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.396467  n/a   
 
 
-
 
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