More than 300 homologs were found in PanDaTox collection
for query gene Franean1_5460 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_5460  binding-protein-dependent transport systems inner membrane component  100 
 
 
334 aa  668    Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_0935  multiple sugar transport system permease protein  52.91 
 
 
328 aa  329  4e-89  Thermobifida fusca YX  Bacteria  normal  0.36894  n/a   
 
 
-
 
NC_013595  Sros_3307  sugar transport system (permease)  50.91 
 
 
325 aa  327  2.0000000000000001e-88  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.175437 
 
 
-
 
NC_013093  Amir_1786  binding-protein-dependent transport systems inner membrane component  50.94 
 
 
335 aa  318  6e-86  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0186858  n/a   
 
 
-
 
NC_013510  Tcur_1735  binding-protein-dependent transport systems inner membrane component  53.85 
 
 
328 aa  317  2e-85  Thermomonospora curvata DSM 43183  Bacteria  normal  0.152171  n/a   
 
 
-
 
NC_014165  Tbis_0841  binding-protein-dependent transporter inner membrane component  52.4 
 
 
337 aa  316  4e-85  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.203798 
 
 
-
 
NC_013131  Caci_5331  binding-protein-dependent transport systems inner membrane component  52.82 
 
 
324 aa  310  2e-83  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.455385  normal  0.753701 
 
 
-
 
NC_008578  Acel_0131  binding-protein-dependent transport systems inner membrane component  48.79 
 
 
320 aa  291  2e-77  Acidothermus cellulolyticus 11B  Bacteria  normal  0.495335  normal 
 
 
-
 
NC_013595  Sros_7172  sugar transport system (permease)  52.58 
 
 
323 aa  287  2e-76  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0377247 
 
 
-
 
NC_009953  Sare_1507  binding-protein-dependent transport systems inner membrane component  52.86 
 
 
323 aa  285  1.0000000000000001e-75  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000203032 
 
 
-
 
NC_009380  Strop_1558  binding-protein-dependent transport systems inner membrane component  50.65 
 
 
322 aa  283  3.0000000000000004e-75  Salinispora tropica CNB-440  Bacteria  normal  0.946878  normal  0.637369 
 
 
-
 
NC_009953  Sare_0392  binding-protein-dependent transport systems inner membrane component  52.49 
 
 
328 aa  283  3.0000000000000004e-75  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00382252 
 
 
-
 
NC_009664  Krad_3565  binding-protein-dependent transport systems inner membrane component  47.4 
 
 
316 aa  273  2.0000000000000002e-72  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.702273  normal  0.0136241 
 
 
-
 
NC_009664  Krad_3963  binding-protein-dependent transport systems inner membrane component  49.25 
 
 
326 aa  266  2.9999999999999995e-70  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0380307  normal  0.973635 
 
 
-
 
NC_011886  Achl_0400  binding-protein-dependent transport systems inner membrane component  46.25 
 
 
331 aa  263  3e-69  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013521  Sked_08410  carbohydrate ABC transporter membrane protein  45.4 
 
 
379 aa  258  1e-67  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.166742 
 
 
-
 
NC_012669  Bcav_2838  binding-protein-dependent transport systems inner membrane component  42.99 
 
 
346 aa  247  2e-64  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.073402  normal 
 
 
-
 
NC_013530  Xcel_2612  binding-protein-dependent transport systems inner membrane component  42.48 
 
 
365 aa  247  3e-64  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_19290  carbohydrate ABC transporter membrane protein  43.22 
 
 
328 aa  246  4.9999999999999997e-64  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0926617  n/a   
 
 
-
 
NC_013947  Snas_6281  binding-protein-dependent transport systems inner membrane component  43.81 
 
 
309 aa  245  9e-64  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1892  binding-protein-dependent transporter inner membrane component  50.17 
 
 
323 aa  244  1.9999999999999999e-63  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.254377 
 
 
-
 
NC_014151  Cfla_2400  binding-protein-dependent transport systems inner membrane component  41.8 
 
 
338 aa  243  3e-63  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00254991 
 
 
-
 
NC_012669  Bcav_0555  binding-protein-dependent transport systems inner membrane component  43.07 
 
 
328 aa  237  2e-61  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.913769 
 
 
-
 
NC_013174  Jden_1881  binding-protein-dependent transport systems inner membrane component  45.22 
 
 
334 aa  233  4.0000000000000004e-60  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.804974 
 
 
-
 
NC_013526  Tter_2645  binding-protein-dependent transport systems inner membrane component  46.1 
 
 
311 aa  231  1e-59  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2895  binding-protein-dependent transport systems inner membrane component  39.45 
 
 
316 aa  217  2.9999999999999998e-55  Roseiflexus sp. RS-1  Bacteria  normal  0.0497455  normal 
 
 
-
 
NC_009767  Rcas_1880  binding-protein-dependent transport systems inner membrane component  41.01 
 
 
316 aa  214  1.9999999999999998e-54  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.2607 
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  38.49 
 
 
298 aa  202  8e-51  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_1216  binding-protein-dependent transport systems inner membrane component  36.88 
 
 
315 aa  194  1e-48  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.00000228392  n/a   
 
 
-
 
NC_007908  Rfer_1100  binding-protein-dependent transport systems inner membrane component  34.38 
 
 
311 aa  190  2e-47  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.0016702  n/a   
 
 
-
 
NC_013595  Sros_6585  lactose transport system (permease)  39.87 
 
 
306 aa  189  4e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_11610  permease component of ABC-type sugar transporter  38 
 
 
311 aa  186  3e-46  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.117578  normal  0.102082 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  35.06 
 
 
306 aa  185  1.0000000000000001e-45  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_008010  Dgeo_2860  binding-protein-dependent transport systems inner membrane component  37.65 
 
 
322 aa  180  2.9999999999999997e-44  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.396467  n/a   
 
 
-
 
NC_011899  Hore_04280  binding-protein-dependent transport systems inner membrane component  35.45 
 
 
302 aa  179  4.999999999999999e-44  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011371  Rleg2_6525  binding-protein-dependent transport systems inner membrane component  38.87 
 
 
286 aa  177  2e-43  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.728774  normal  0.302995 
 
 
-
 
NC_013947  Snas_2734  binding-protein-dependent transport systems inner membrane component  38.64 
 
 
308 aa  176  6e-43  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.172129  normal  0.124427 
 
 
-
 
NC_012852  Rleg_6113  binding-protein-dependent transport systems inner membrane component  38.16 
 
 
286 aa  175  9e-43  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.453278  normal 
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  34.11 
 
 
309 aa  173  3.9999999999999995e-42  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013521  Sked_27700  permease component of ABC-type sugar transporter  37.46 
 
 
321 aa  171  2e-41  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479477 
 
 
-
 
NC_012669  Bcav_2264  binding-protein-dependent transport systems inner membrane component  33.44 
 
 
307 aa  171  2e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.277747  normal 
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  38.16 
 
 
305 aa  169  5e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0827  binding-protein-dependent transport systems inner membrane component  36.14 
 
 
299 aa  169  6e-41  Petrotoga mobilis SJ95  Bacteria  normal  0.175132  n/a   
 
 
-
 
NC_011898  Ccel_2111  binding-protein-dependent transport systems inner membrane component  31.97 
 
 
306 aa  166  4e-40  Clostridium cellulolyticum H10  Bacteria  normal  0.157384  n/a   
 
 
-
 
NC_013526  Tter_2024  binding-protein-dependent transport systems inner membrane component  36.33 
 
 
303 aa  166  5e-40  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000249122  n/a   
 
 
-
 
NC_013745  Htur_4489  binding-protein-dependent transport systems inner membrane component  30.94 
 
 
308 aa  164  3e-39  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.283214  n/a   
 
 
-
 
NC_013946  Mrub_0285  binding-protein-dependent transport systems inner membrane component  34.7 
 
 
327 aa  163  4.0000000000000004e-39  Meiothermus ruber DSM 1279  Bacteria  normal  0.0175684  normal  0.996665 
 
 
-
 
NC_012669  Bcav_0311  binding-protein-dependent transport systems inner membrane component  33.23 
 
 
321 aa  163  4.0000000000000004e-39  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  37.89 
 
 
287 aa  162  6e-39  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0512  binding-protein-dependent transport systems inner membrane component  34.06 
 
 
318 aa  162  7e-39  Jonesia denitrificans DSM 20603  Bacteria  hitchhiker  0.000000473727  hitchhiker  0.00124128 
 
 
-
 
NC_011831  Cagg_0728  binding-protein-dependent transport systems inner membrane component  33.43 
 
 
313 aa  161  1e-38  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000239391  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  34.1 
 
 
307 aa  161  1e-38  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  34.1 
 
 
307 aa  161  1e-38  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_013131  Caci_2030  binding-protein-dependent transport systems inner membrane component  35.34 
 
 
297 aa  161  1e-38  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.185813 
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  32.3 
 
 
300 aa  160  2e-38  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0507  binding-protein-dependent transport systems inner membrane component  36.09 
 
 
299 aa  161  2e-38  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000030377  n/a   
 
 
-
 
NC_013411  GYMC61_0532  binding-protein-dependent transport systems inner membrane component  32.28 
 
 
311 aa  160  3e-38  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012028  Hlac_2863  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
356 aa  160  3e-38  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_012880  Dd703_2034  binding-protein-dependent transport systems inner membrane component  32.38 
 
 
296 aa  160  4e-38  Dickeya dadantii Ech703  Bacteria  normal  0.963086  n/a   
 
 
-
 
NC_012912  Dd1591_1969  binding-protein-dependent transport systems inner membrane component  32.74 
 
 
296 aa  159  5e-38  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3573  binding-protein-dependent transport systems inner membrane component  32.8 
 
 
353 aa  159  6e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.500594  normal 
 
 
-
 
NC_009784  VIBHAR_06940  hypothetical protein  32.12 
 
 
329 aa  159  6e-38  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_014212  Mesil_2055  binding-protein-dependent transport systems inner membrane component  36.08 
 
 
415 aa  159  7e-38  Meiothermus silvanus DSM 9946  Bacteria  normal  0.33288  normal  0.443347 
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  33.54 
 
 
321 aa  158  1e-37  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  33.84 
 
 
291 aa  157  2e-37  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_010513  Xfasm12_1606  ABC transporter sugar permease  35.77 
 
 
293 aa  157  2e-37  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_1549  binding-protein-dependent transport systems inner membrane component  35.77 
 
 
293 aa  157  2e-37  Xylella fastidiosa M23  Bacteria  normal  0.563461  n/a   
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  34.36 
 
 
309 aa  157  3e-37  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_008048  Sala_1022  binding-protein-dependent transport systems inner membrane component  34.67 
 
 
294 aa  156  4e-37  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2544  binding-protein-dependent transport systems inner membrane component  36.57 
 
 
313 aa  157  4e-37  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_3250  binding-protein-dependent transporter inner membrane component  37.64 
 
 
310 aa  156  4e-37  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1516  binding-protein-dependent transport systems inner membrane component  32.81 
 
 
315 aa  156  5.0000000000000005e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0640497  normal 
 
 
-
 
NC_007413  Ava_0461  binding-protein dependent transport system inner membrane protein  35.82 
 
 
301 aa  155  6e-37  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0667876 
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  34.39 
 
 
319 aa  155  6e-37  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2809  binding-protein-dependent transport systems inner membrane component  36.11 
 
 
279 aa  155  9e-37  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.232459 
 
 
-
 
NC_012917  PC1_1907  binding-protein-dependent transport systems inner membrane component  31.67 
 
 
296 aa  155  1e-36  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0961638  n/a   
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
295 aa  155  1e-36  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0774  binding-protein-dependent transport systems inner membrane component  31.43 
 
 
293 aa  155  1e-36  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2200  binding-protein-dependent transport systems inner membrane component  31.67 
 
 
296 aa  154  1e-36  Pectobacterium wasabiae WPP163  Bacteria  normal  0.467118  n/a   
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  38.15 
 
 
306 aa  154  2e-36  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  37.23 
 
 
299 aa  154  2e-36  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_013946  Mrub_2532  binding-protein-dependent transport systems inner membrane component  35.86 
 
 
417 aa  154  2.9999999999999998e-36  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.636087 
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  34.67 
 
 
315 aa  153  4e-36  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0973  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
293 aa  153  4e-36  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_06580  carbohydrate ABC transporter membrane protein  32.46 
 
 
318 aa  153  4e-36  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2875  binding-protein-dependent transport systems inner membrane component  31.13 
 
 
318 aa  153  5e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal  0.0272583 
 
 
-
 
NC_011881  Achl_4622  binding-protein-dependent transport systems inner membrane component  33.11 
 
 
317 aa  152  1e-35  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012917  PC1_0737  binding-protein-dependent transport systems inner membrane component  32.29 
 
 
293 aa  151  2e-35  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
313 aa  150  3e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  32.7 
 
 
309 aa  150  3e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_009620  Smed_4135  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
299 aa  149  4e-35  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_3289  binding-protein-dependent transport systems inner membrane component  31.32 
 
 
296 aa  149  5e-35  Enterobacter sp. 638  Bacteria  normal  normal  0.243021 
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  34.24 
 
 
316 aa  149  8e-35  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_1315  ABC transporter, permease protein  35.53 
 
 
301 aa  149  8e-35  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_009654  Mmwyl1_2714  binding-protein-dependent transport systems inner membrane component  32.01 
 
 
293 aa  149  8e-35  Marinomonas sp. MWYL1  Bacteria  normal  0.548655  normal 
 
 
-
 
NC_009939  Dgeo_2918  ABC-type sugar transport system, permease component  34.63 
 
 
305 aa  149  8e-35  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  32.7 
 
 
308 aa  148  1.0000000000000001e-34  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2041  binding-protein-dependent transport systems inner membrane component  32.83 
 
 
305 aa  148  1.0000000000000001e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00457854  n/a   
 
 
-
 
NC_009708  YpsIP31758_1691  oligogalacturonide ABC tansporter, permease protein  30.6 
 
 
296 aa  148  1.0000000000000001e-34  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.041328  n/a   
 
 
-
 
NC_012034  Athe_0400  binding-protein-dependent transport systems inner membrane component  32.08 
 
 
295 aa  148  1.0000000000000001e-34  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.000000000506379  n/a   
 
 
-
 
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