Gene Aaci_1216 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAaci_1216 
Symbol 
ID8424717 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 
KingdomBacteria 
Replicon accessionNC_013205 
Strand+ 
Start bp1253312 
End bp1254259 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content47% 
IMG OID645027327 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_003184634 
Protein GI258511200 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1175] ABC-type sugar transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones1 
Plasmid unclonability p-value0.00000228392 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCTACTA TTCAGCGAGA ATCCGTCGTC ACAGAGAGAG GAACTCGCTC GCTAACGCAG 
CTATTGCGTT TTCTGCGGCA ACCTGGCGTT CCTTTGTGGA TACCTTATGT GTTCATTACT 
CCCTTTTTCA TCATATTTGC TGTTTTTATG CTCTATCCGA TTGTCGATAC TTTGGTCCTC 
TCCTTTGAAA ACTGGTCCAC TGTTCAGTCG ACATGGGTTG GAATTCAAAA TTATCGACTC 
GTGATAACAG ACCCAGCGTT TTGGACTTCT CTACTGAATG ACGCCTTCAT TCTGCTTATT 
CAAGTTCCGT TTATGTTGTT CATTGCTACA CTCCTAGCGG TCGCTTTGAA TGCGCGCTTT 
CTCAAGCTGA AGTGGCTGTT CAGGCTCCTG ATCTTCTTCC CGGTTCTGGT GGACGCGGTA 
ACGTACACGA TAGCATTTCA GTTAATTTTT AATCCTAGTT TCGGGATGAT GAACTACCTT 
CTGCACCTTG TAGGGCTGCC GTCTATCAAC TGGATAGGGA ACTCGTGGGC TGCACGGTTG 
GCTATTTTTC TTGTGGTGAC ATGGAGATGG ACTGGATATA ACGCGATTAT CATACTGTCC 
GGCCTTCAAA ACATTCCTGA GGAGGTATAT GAATCTGCCG TCGTCGACGG AGCAGGACGC 
GTGCGTACGT TCTTCCAAAT CACCTTGCCT TTGCTGCGTC CGGTGATTCT CTTCTGTACG 
ATCTTATCGA CCGTTGGTAC CTTACAGCTT TTCACGGAAC CGTACATTCT AACAGGCGGT 
GGCCCCGGGA ATGCAACAGA AACACCAATG TTGTATTTGT ATAACATAGG ATTTCAGAAC 
TATAACTTCG GTCTCGCTTC GGCAGGAACG TACATCTTAA CGACGATTAT TGCCATACTC 
TCGTATTTTC AGATAAGAGT CTCTCGTGGG GGCGACTACA GTGCGTGA
 
Protein sequence
MSTIQRESVV TERGTRSLTQ LLRFLRQPGV PLWIPYVFIT PFFIIFAVFM LYPIVDTLVL 
SFENWSTVQS TWVGIQNYRL VITDPAFWTS LLNDAFILLI QVPFMLFIAT LLAVALNARF 
LKLKWLFRLL IFFPVLVDAV TYTIAFQLIF NPSFGMMNYL LHLVGLPSIN WIGNSWAARL 
AIFLVVTWRW TGYNAIIILS GLQNIPEEVY ESAVVDGAGR VRTFFQITLP LLRPVILFCT 
ILSTVGTLQL FTEPYILTGG GPGNATETPM LYLYNIGFQN YNFGLASAGT YILTTIIAIL 
SYFQIRVSRG GDYSA