More than 300 homologs were found in PanDaTox collection
for query gene Smed_4135 on replicon NC_009620
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009620  Smed_4135  binding-protein-dependent transport systems inner membrane component  100 
 
 
299 aa  597  1e-169  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0737  binding-protein-dependent transport systems inner membrane component  65.31 
 
 
293 aa  390  1e-107  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0973  binding-protein-dependent transport systems inner membrane component  64.63 
 
 
293 aa  384  1e-105  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0532  binding-protein-dependent transport systems inner membrane component  58.66 
 
 
311 aa  347  1e-94  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011661  Dtur_0507  binding-protein-dependent transport systems inner membrane component  57 
 
 
299 aa  319  3e-86  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000030377  n/a   
 
 
-
 
NC_010003  Pmob_0827  binding-protein-dependent transport systems inner membrane component  50.52 
 
 
299 aa  297  2e-79  Petrotoga mobilis SJ95  Bacteria  normal  0.175132  n/a   
 
 
-
 
NC_010001  Cphy_3589  binding-protein-dependent transport systems inner membrane component  53.9 
 
 
294 aa  290  3e-77  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00013616  n/a   
 
 
-
 
NC_013530  Xcel_0918  binding-protein-dependent transport systems inner membrane component  48.33 
 
 
298 aa  283  2.0000000000000002e-75  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2734  binding-protein-dependent transport systems inner membrane component  48.19 
 
 
308 aa  239  2.9999999999999997e-62  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.172129  normal  0.124427 
 
 
-
 
NC_013131  Caci_2030  binding-protein-dependent transport systems inner membrane component  46.49 
 
 
297 aa  228  1e-58  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.185813 
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  43.11 
 
 
298 aa  221  9.999999999999999e-57  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6585  lactose transport system (permease)  45.45 
 
 
306 aa  214  1.9999999999999998e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_012852  Rleg_6113  binding-protein-dependent transport systems inner membrane component  43.26 
 
 
286 aa  213  3.9999999999999995e-54  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.453278  normal 
 
 
-
 
NC_011371  Rleg2_6525  binding-protein-dependent transport systems inner membrane component  42.91 
 
 
286 aa  212  5.999999999999999e-54  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.728774  normal  0.302995 
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  39.86 
 
 
300 aa  197  2.0000000000000003e-49  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_012028  Hlac_2863  binding-protein-dependent transport systems inner membrane component  41.99 
 
 
356 aa  191  1e-47  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_013205  Aaci_1216  binding-protein-dependent transport systems inner membrane component  39.36 
 
 
315 aa  185  1.0000000000000001e-45  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.00000228392  n/a   
 
 
-
 
NC_013946  Mrub_2809  binding-protein-dependent transport systems inner membrane component  42.49 
 
 
279 aa  184  1.0000000000000001e-45  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.232459 
 
 
-
 
NC_007413  Ava_0461  binding-protein dependent transport system inner membrane protein  37.91 
 
 
301 aa  177  3e-43  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0667876 
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  40.14 
 
 
287 aa  176  4e-43  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0555  binding-protein-dependent transport systems inner membrane component  38.03 
 
 
328 aa  175  7e-43  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.913769 
 
 
-
 
NC_013411  GYMC61_1728  binding-protein-dependent transport systems inner membrane component  36.63 
 
 
299 aa  174  9.999999999999999e-43  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013521  Sked_21160  carbohydrate ABC transporter membrane protein  37.06 
 
 
314 aa  174  1.9999999999999998e-42  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.103465  normal  0.100515 
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  39.02 
 
 
291 aa  174  1.9999999999999998e-42  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  35.82 
 
 
299 aa  173  1.9999999999999998e-42  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_008578  Acel_0131  binding-protein-dependent transport systems inner membrane component  36.81 
 
 
320 aa  172  9e-42  Acidothermus cellulolyticus 11B  Bacteria  normal  0.495335  normal 
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  34.95 
 
 
309 aa  171  1e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013093  Amir_1786  binding-protein-dependent transport systems inner membrane component  37.41 
 
 
335 aa  170  3e-41  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0186858  n/a   
 
 
-
 
NC_011981  Avi_7347  ABC transporter membrane spanning protein (sugar)  40.36 
 
 
320 aa  169  7e-41  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5336  binding-protein-dependent transport systems inner membrane component  39.72 
 
 
318 aa  168  1e-40  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.949955  normal 
 
 
-
 
NC_010577  XfasM23_1549  binding-protein-dependent transport systems inner membrane component  34.24 
 
 
293 aa  168  1e-40  Xylella fastidiosa M23  Bacteria  normal  0.563461  n/a   
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  34.29 
 
 
295 aa  167  2e-40  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_5053  binding-protein-dependent transport systems inner membrane component  40 
 
 
318 aa  167  2e-40  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0625824  normal 
 
 
-
 
NC_010513  Xfasm12_1606  ABC transporter sugar permease  34.24 
 
 
293 aa  167  2e-40  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12077  sugar ABC transporter membrane protein  35.44 
 
 
300 aa  166  4e-40  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2645  binding-protein-dependent transport systems inner membrane component  40.89 
 
 
311 aa  166  4e-40  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_007513  Syncc9902_1051  lactose transport system permease protein  34.95 
 
 
306 aa  165  8e-40  Synechococcus sp. CC9902  Bacteria  normal  0.390377  n/a   
 
 
-
 
NC_011884  Cyan7425_3980  binding-protein-dependent transport systems inner membrane component  35.88 
 
 
299 aa  164  1.0000000000000001e-39  Cyanothece sp. PCC 7425  Bacteria  normal  hitchhiker  0.00655631 
 
 
-
 
NC_014248  Aazo_4983  binding-protein-dependent transporter inner membrane protein  34.47 
 
 
310 aa  164  1.0000000000000001e-39  'Nostoc azollae' 0708  Bacteria  normal  0.300856  n/a   
 
 
-
 
NC_007908  Rfer_1100  binding-protein-dependent transport systems inner membrane component  35.03 
 
 
311 aa  164  2.0000000000000002e-39  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.0016702  n/a   
 
 
-
 
NC_008048  Sala_1022  binding-protein-dependent transport systems inner membrane component  35.19 
 
 
294 aa  163  3e-39  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_013201  Hmuk_3223  binding-protein-dependent transport systems inner membrane component  36.62 
 
 
325 aa  163  3e-39  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.738302  normal 
 
 
-
 
NC_013172  Bfae_19290  carbohydrate ABC transporter membrane protein  36.84 
 
 
328 aa  162  6e-39  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0926617  n/a   
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  37.1 
 
 
316 aa  162  7e-39  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_2682  binding-protein-dependent transport systems inner membrane component  35.99 
 
 
293 aa  162  8.000000000000001e-39  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.990678  normal 
 
 
-
 
NC_007333  Tfu_0935  multiple sugar transport system permease protein  37.86 
 
 
328 aa  161  1e-38  Thermobifida fusca YX  Bacteria  normal  0.36894  n/a   
 
 
-
 
NC_013526  Tter_2024  binding-protein-dependent transport systems inner membrane component  38.29 
 
 
303 aa  161  1e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000249122  n/a   
 
 
-
 
NC_007516  Syncc9605_1449  lactose transport system permease protein  34.72 
 
 
290 aa  160  2e-38  Synechococcus sp. CC9605  Bacteria  normal  normal  0.0650773 
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  37.97 
 
 
299 aa  160  2e-38  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3963  binding-protein-dependent transport systems inner membrane component  37.88 
 
 
326 aa  160  2e-38  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0380307  normal  0.973635 
 
 
-
 
NC_007413  Ava_0563  binding-protein dependent transport system inner membrane protein  39.22 
 
 
294 aa  160  3e-38  Anabaena variabilis ATCC 29413  Bacteria  normal  0.22835  normal  0.0558608 
 
 
-
 
NC_013235  Namu_0513  binding-protein-dependent transport systems inner membrane component  36.39 
 
 
314 aa  160  3e-38  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  36.92 
 
 
305 aa  160  3e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0944  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
290 aa  160  3e-38  Cyanothece sp. PCC 7425  Bacteria  normal  0.120711  normal  0.307929 
 
 
-
 
NC_012669  Bcav_3573  binding-protein-dependent transport systems inner membrane component  35.64 
 
 
353 aa  160  3e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.500594  normal 
 
 
-
 
NC_009616  Tmel_1015  binding-protein-dependent transport systems inner membrane component  37.32 
 
 
292 aa  159  4e-38  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  36.2 
 
 
307 aa  159  4e-38  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  36.2 
 
 
307 aa  159  4e-38  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_011898  Ccel_2111  binding-protein-dependent transport systems inner membrane component  30.95 
 
 
306 aa  159  6e-38  Clostridium cellulolyticum H10  Bacteria  normal  0.157384  n/a   
 
 
-
 
NC_009523  RoseRS_2895  binding-protein-dependent transport systems inner membrane component  34.49 
 
 
316 aa  159  6e-38  Roseiflexus sp. RS-1  Bacteria  normal  0.0497455  normal 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  32.44 
 
 
306 aa  159  6e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  36.92 
 
 
288 aa  159  8e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_009767  Rcas_1880  binding-protein-dependent transport systems inner membrane component  35.92 
 
 
316 aa  158  1e-37  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.2607 
 
 
-
 
NC_013205  Aaci_0914  binding-protein-dependent transport systems inner membrane component  32.49 
 
 
310 aa  157  2e-37  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_0526  ABC-type sugar transport systems permease components-like  34.86 
 
 
293 aa  157  3e-37  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_5460  binding-protein-dependent transport systems inner membrane component  34.42 
 
 
334 aa  157  3e-37  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1735  binding-protein-dependent transport systems inner membrane component  35.07 
 
 
328 aa  156  4e-37  Thermomonospora curvata DSM 43183  Bacteria  normal  0.152171  n/a   
 
 
-
 
NC_008541  Arth_3147  binding-protein-dependent transport systems inner membrane component  36.05 
 
 
319 aa  155  7e-37  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.00382098  n/a   
 
 
-
 
NC_013517  Sterm_4049  binding-protein-dependent transport systems inner membrane component  36.3 
 
 
292 aa  155  7e-37  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  38.11 
 
 
309 aa  155  8e-37  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_0941  binding-protein-dependent transport systems inner membrane component  36.2 
 
 
313 aa  155  9e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.737632 
 
 
-
 
NC_014212  Mesil_2465  binding-protein-dependent transport systems inner membrane component  39.54 
 
 
296 aa  155  9e-37  Meiothermus silvanus DSM 9946  Bacteria  normal  0.603266  normal  0.170133 
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  35.27 
 
 
321 aa  154  1e-36  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4638  binding-protein dependent transport system inner membrane protein  35.16 
 
 
308 aa  154  1e-36  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000000461706  normal  0.23331 
 
 
-
 
NC_014210  Ndas_0559  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
305 aa  155  1e-36  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009486  Tpet_0117  binding-protein-dependent transport systems inner membrane component  33.89 
 
 
300 aa  154  2e-36  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_03080  permease component of ABC-type sugar transporter  36.75 
 
 
322 aa  154  2e-36  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal 
 
 
-
 
NC_012880  Dd703_2034  binding-protein-dependent transport systems inner membrane component  35.82 
 
 
296 aa  154  2e-36  Dickeya dadantii Ech703  Bacteria  normal  0.963086  n/a   
 
 
-
 
NC_010483  TRQ2_0115  binding-protein-dependent transport systems inner membrane component  33.89 
 
 
300 aa  154  2e-36  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1954  binding-protein-dependent transport systems inner membrane component  31.33 
 
 
359 aa  153  2.9999999999999998e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  hitchhiker  0.00299224 
 
 
-
 
NC_013595  Sros_3307  sugar transport system (permease)  35.79 
 
 
325 aa  153  2.9999999999999998e-36  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.175437 
 
 
-
 
NC_013205  Aaci_0077  binding-protein-dependent transport systems inner membrane component  35.14 
 
 
311 aa  153  2.9999999999999998e-36  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0400  binding-protein-dependent transport systems inner membrane component  32.83 
 
 
295 aa  153  2.9999999999999998e-36  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.000000000506379  n/a   
 
 
-
 
NC_010717  PXO_00881  ABC transporter sugar permease  33.9 
 
 
294 aa  153  2.9999999999999998e-36  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0244413  n/a   
 
 
-
 
NC_012912  Dd1591_1969  binding-protein-dependent transport systems inner membrane component  35.46 
 
 
296 aa  153  2.9999999999999998e-36  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1139  binding-protein-dependent transport systems inner membrane component  32.01 
 
 
372 aa  153  2.9999999999999998e-36  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.888329  n/a   
 
 
-
 
NC_013161  Cyan8802_4298  binding-protein-dependent transport systems inner membrane component  38.46 
 
 
294 aa  152  4e-36  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.200183 
 
 
-
 
NC_009664  Krad_3565  binding-protein-dependent transport systems inner membrane component  34.06 
 
 
316 aa  153  4e-36  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.702273  normal  0.0136241 
 
 
-
 
NC_014212  Mesil_0285  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
318 aa  153  4e-36  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_4236  binding-protein-dependent transport systems inner membrane component  38.46 
 
 
294 aa  152  4e-36  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013205  Aaci_2047  binding-protein-dependent transport systems inner membrane component  33.68 
 
 
294 aa  152  5e-36  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.550241  n/a   
 
 
-
 
NC_010483  TRQ2_0339  binding-protein-dependent transport systems inner membrane component  36.75 
 
 
420 aa  152  5.9999999999999996e-36  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3848  binding-protein-dependent transport systems inner membrane component  35.59 
 
 
320 aa  152  7e-36  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0230008  normal  0.429544 
 
 
-
 
NC_013530  Xcel_0898  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
319 aa  152  7e-36  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.14469  n/a   
 
 
-
 
NC_012669  Bcav_2602  binding-protein-dependent transport systems inner membrane component  36.03 
 
 
306 aa  152  8e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0924232  normal 
 
 
-
 
NC_008528  OEOE_0254  ABC-type sugar transport system, permease component  34.07 
 
 
310 aa  151  1e-35  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0321  binding-protein-dependent transport systems inner membrane component  36.32 
 
 
420 aa  151  1e-35  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2819  binding-protein-dependent transport systems inner membrane component  35.25 
 
 
315 aa  151  1e-35  Roseiflexus sp. RS-1  Bacteria  normal  0.0308401  normal 
 
 
-
 
NC_009939  Dgeo_2918  ABC-type sugar transport system, permease component  36.96 
 
 
305 aa  151  1e-35  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_010001  Cphy_0290  binding-protein-dependent transport systems inner membrane component  35.82 
 
 
297 aa  151  1e-35  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
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