More than 300 homologs were found in PanDaTox collection
for query gene Sked_21160 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_21160  carbohydrate ABC transporter membrane protein  100 
 
 
314 aa  616  1e-175  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.103465  normal  0.100515 
 
 
-
 
NC_008541  Arth_3147  binding-protein-dependent transport systems inner membrane component  74.29 
 
 
319 aa  447  1.0000000000000001e-124  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.00382098  n/a   
 
 
-
 
NC_013235  Namu_0513  binding-protein-dependent transport systems inner membrane component  74.12 
 
 
314 aa  436  1e-121  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3573  binding-protein-dependent transport systems inner membrane component  58.42 
 
 
353 aa  347  2e-94  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.500594  normal 
 
 
-
 
NC_010577  XfasM23_1549  binding-protein-dependent transport systems inner membrane component  41.18 
 
 
293 aa  239  2.9999999999999997e-62  Xylella fastidiosa M23  Bacteria  normal  0.563461  n/a   
 
 
-
 
NC_010513  Xfasm12_1606  ABC transporter sugar permease  41.18 
 
 
293 aa  238  1e-61  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  45.98 
 
 
291 aa  236  3e-61  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_010717  PXO_00881  ABC transporter sugar permease  43.94 
 
 
294 aa  236  5.0000000000000005e-61  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0244413  n/a   
 
 
-
 
NC_011071  Smal_2682  binding-protein-dependent transport systems inner membrane component  44.29 
 
 
293 aa  235  7e-61  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.990678  normal 
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  41.84 
 
 
299 aa  229  5e-59  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  42.86 
 
 
317 aa  221  9.999999999999999e-57  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  47.37 
 
 
287 aa  217  2e-55  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1022  binding-protein-dependent transport systems inner membrane component  40.55 
 
 
294 aa  210  2e-53  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  40.2 
 
 
298 aa  209  5e-53  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  38 
 
 
309 aa  201  1.9999999999999998e-50  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  39.16 
 
 
313 aa  200  3e-50  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5350  binding-protein-dependent transport systems inner membrane component  38.67 
 
 
308 aa  199  5e-50  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.84186  normal  0.48209 
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  37.25 
 
 
316 aa  197  2.0000000000000003e-49  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  37.12 
 
 
295 aa  194  1e-48  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0400  binding-protein-dependent transport systems inner membrane component  33.79 
 
 
295 aa  194  1e-48  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.000000000506379  n/a   
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  38.8 
 
 
309 aa  193  3e-48  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012848  Rleg_5053  binding-protein-dependent transport systems inner membrane component  38.33 
 
 
318 aa  193  3e-48  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0625824  normal 
 
 
-
 
NC_013521  Sked_27700  permease component of ABC-type sugar transporter  38.06 
 
 
321 aa  192  5e-48  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479477 
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  34.69 
 
 
299 aa  192  7e-48  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2734  binding-protein-dependent transport systems inner membrane component  38.19 
 
 
308 aa  192  9e-48  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.172129  normal  0.124427 
 
 
-
 
NC_012669  Bcav_3898  binding-protein-dependent transport systems inner membrane component  37.38 
 
 
324 aa  191  1e-47  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  39.93 
 
 
309 aa  190  2.9999999999999997e-47  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013595  Sros_6585  lactose transport system (permease)  40.13 
 
 
306 aa  190  2.9999999999999997e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  39.16 
 
 
288 aa  188  8e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_013131  Caci_2030  binding-protein-dependent transport systems inner membrane component  41.26 
 
 
297 aa  188  1e-46  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.185813 
 
 
-
 
NC_009523  RoseRS_2819  binding-protein-dependent transport systems inner membrane component  37.58 
 
 
315 aa  187  2e-46  Roseiflexus sp. RS-1  Bacteria  normal  0.0308401  normal 
 
 
-
 
NC_009767  Rcas_2545  binding-protein-dependent transport systems inner membrane component  37.21 
 
 
316 aa  187  3e-46  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.637107  normal  0.115222 
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  38.72 
 
 
300 aa  186  4e-46  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_4634  binding-protein-dependent transport systems inner membrane component  38.75 
 
 
292 aa  186  4e-46  Nocardioides sp. JS614  Bacteria  normal  0.219562  n/a   
 
 
-
 
NC_011368  Rleg2_5336  binding-protein-dependent transport systems inner membrane component  37.46 
 
 
318 aa  186  4e-46  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.949955  normal 
 
 
-
 
NC_011981  Avi_7347  ABC transporter membrane spanning protein (sugar)  38 
 
 
320 aa  186  5e-46  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0290  binding-protein-dependent transport systems inner membrane component  38.62 
 
 
297 aa  186  5e-46  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2375  binding-protein-dependent transport systems inner membrane component  37.8 
 
 
298 aa  186  6e-46  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  37.14 
 
 
306 aa  185  9e-46  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_013411  GYMC61_0532  binding-protein-dependent transport systems inner membrane component  31.77 
 
 
311 aa  184  1.0000000000000001e-45  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_0321  binding-protein-dependent transport systems inner membrane component  37.78 
 
 
316 aa  183  3e-45  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2047  binding-protein-dependent transport systems inner membrane component  39.86 
 
 
294 aa  183  4.0000000000000006e-45  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.550241  n/a   
 
 
-
 
NC_013526  Tter_2511  binding-protein-dependent transport systems inner membrane component  39.51 
 
 
317 aa  182  6e-45  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.10809  n/a   
 
 
-
 
NC_013526  Tter_2573  binding-protein-dependent transport systems inner membrane component  39.66 
 
 
309 aa  180  2e-44  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0285  binding-protein-dependent transport systems inner membrane component  37.25 
 
 
318 aa  181  2e-44  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  35.83 
 
 
305 aa  180  2e-44  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0774  binding-protein-dependent transport systems inner membrane component  37.09 
 
 
293 aa  180  2e-44  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2136  binding-protein-dependent transport systems inner membrane component  39.86 
 
 
307 aa  180  2e-44  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_1549  MalF-type ABC sugar transport systems permease component  34.48 
 
 
317 aa  180  2e-44  Bifidobacterium longum DJO10A  Bacteria  normal  0.649517  n/a   
 
 
-
 
NC_013235  Namu_3848  binding-protein-dependent transport systems inner membrane component  37.11 
 
 
320 aa  180  2.9999999999999997e-44  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0230008  normal  0.429544 
 
 
-
 
NC_013205  Aaci_0914  binding-protein-dependent transport systems inner membrane component  38.7 
 
 
310 aa  179  4e-44  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2302  binding-protein-dependent transport systems inner membrane component  35.35 
 
 
320 aa  179  4e-44  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.253823  n/a   
 
 
-
 
NC_012669  Bcav_1297  binding-protein-dependent transport systems inner membrane component  40 
 
 
279 aa  179  4e-44  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.983189  normal 
 
 
-
 
NC_013521  Sked_05430  carbohydrate ABC transporter membrane protein  34.06 
 
 
321 aa  179  4.999999999999999e-44  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0550121  normal 
 
 
-
 
NC_008025  Dgeo_1168  binding-protein-dependent transport systems inner membrane component  38.7 
 
 
310 aa  179  5.999999999999999e-44  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.155614  normal 
 
 
-
 
NC_009616  Tmel_1015  binding-protein-dependent transport systems inner membrane component  33.9 
 
 
292 aa  179  5.999999999999999e-44  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  39.16 
 
 
321 aa  178  8e-44  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2041  binding-protein-dependent transport systems inner membrane component  38.3 
 
 
305 aa  178  1e-43  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00457854  n/a   
 
 
-
 
NC_012850  Rleg_3429  binding-protein-dependent transport systems inner membrane component  40.68 
 
 
307 aa  177  1e-43  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_0898  binding-protein-dependent transport systems inner membrane component  35.22 
 
 
319 aa  178  1e-43  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.14469  n/a   
 
 
-
 
NC_009767  Rcas_3564  binding-protein-dependent transport systems inner membrane component  38.19 
 
 
316 aa  177  2e-43  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.264329 
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  36.77 
 
 
309 aa  177  2e-43  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_012669  Bcav_0311  binding-protein-dependent transport systems inner membrane component  35.9 
 
 
321 aa  176  5e-43  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_1290  ABC transporter, permease protein  35.74 
 
 
311 aa  176  6e-43  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013205  Aaci_1216  binding-protein-dependent transport systems inner membrane component  34.77 
 
 
315 aa  176  6e-43  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.00000228392  n/a   
 
 
-
 
NC_012917  PC1_0737  binding-protein-dependent transport systems inner membrane component  34.47 
 
 
293 aa  176  7e-43  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2730  binding-protein-dependent transport systems inner membrane component  38.51 
 
 
300 aa  175  7e-43  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  38.26 
 
 
306 aa  175  7e-43  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0728  binding-protein-dependent transport systems inner membrane component  37.62 
 
 
313 aa  175  9.999999999999999e-43  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000239391  normal 
 
 
-
 
NC_010001  Cphy_1390  binding-protein-dependent transport systems inner membrane component  31.38 
 
 
308 aa  174  9.999999999999999e-43  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3401  binding-protein-dependent transport systems inner membrane component  34.98 
 
 
305 aa  175  9.999999999999999e-43  Clostridium phytofermentans ISDg  Bacteria  normal  0.028536  n/a   
 
 
-
 
NC_011661  Dtur_0438  binding-protein-dependent transport systems inner membrane component  33.68 
 
 
302 aa  174  1.9999999999999998e-42  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000597022  n/a   
 
 
-
 
NC_013421  Pecwa_0973  binding-protein-dependent transport systems inner membrane component  34.47 
 
 
293 aa  174  1.9999999999999998e-42  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_15070  permease component of ABC-type sugar transporter  39.93 
 
 
311 aa  174  1.9999999999999998e-42  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0771026  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  37.05 
 
 
307 aa  174  2.9999999999999996e-42  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_011881  Achl_4622  binding-protein-dependent transport systems inner membrane component  36.84 
 
 
317 aa  173  2.9999999999999996e-42  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013521  Sked_03080  permease component of ABC-type sugar transporter  40.28 
 
 
322 aa  173  2.9999999999999996e-42  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  37.05 
 
 
307 aa  174  2.9999999999999996e-42  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_008541  Arth_3328  binding-protein-dependent transport systems inner membrane component  36.3 
 
 
314 aa  172  6.999999999999999e-42  Arthrobacter sp. FB24  Bacteria  normal  0.0166533  n/a   
 
 
-
 
NC_013093  Amir_2919  binding-protein-dependent transport systems inner membrane component  39.16 
 
 
310 aa  172  6.999999999999999e-42  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_1616  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
429 aa  172  7.999999999999999e-42  Thermosipho melanesiensis BI429  Bacteria  normal  0.225919  n/a   
 
 
-
 
NC_009664  Krad_2143  binding-protein-dependent transport systems inner membrane component  37.1 
 
 
318 aa  172  7.999999999999999e-42  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  37.86 
 
 
283 aa  172  9e-42  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_0944  binding-protein-dependent transport systems inner membrane component  36.7 
 
 
290 aa  171  1e-41  Cyanothece sp. PCC 7425  Bacteria  normal  0.120711  normal  0.307929 
 
 
-
 
NC_012848  Rleg_4872  binding-protein-dependent transport systems inner membrane component  36.45 
 
 
310 aa  171  1e-41  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.181942  normal  0.51159 
 
 
-
 
NC_012669  Bcav_2264  binding-protein-dependent transport systems inner membrane component  36.69 
 
 
307 aa  171  1e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.277747  normal 
 
 
-
 
NC_013526  Tter_2453  binding-protein-dependent transport systems inner membrane component  34.8 
 
 
314 aa  171  1e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000200699  n/a   
 
 
-
 
NC_014210  Ndas_0559  binding-protein-dependent transport systems inner membrane component  36.18 
 
 
305 aa  171  2e-41  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0563  binding-protein dependent transport system inner membrane protein  36.33 
 
 
294 aa  171  2e-41  Anabaena variabilis ATCC 29413  Bacteria  normal  0.22835  normal  0.0558608 
 
 
-
 
NC_008262  CPR_0905  transmembrane permease MsmF  32.99 
 
 
289 aa  171  2e-41  Clostridium perfringens SM101  Bacteria  normal  0.0122469  n/a   
 
 
-
 
NC_013131  Caci_4319  binding-protein-dependent transport systems inner membrane component  39.08 
 
 
312 aa  170  2e-41  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.778687  hitchhiker  0.00185272 
 
 
-
 
NC_009972  Haur_1151  binding-protein-dependent transport systems inner membrane component  40.31 
 
 
314 aa  171  2e-41  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.59424  n/a   
 
 
-
 
NC_011886  Achl_0498  binding-protein-dependent transport systems inner membrane component  35.12 
 
 
317 aa  171  2e-41  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000449996 
 
 
-
 
NC_013595  Sros_3074  sugar ABC transporter permease protein  38.52 
 
 
307 aa  171  2e-41  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.146884 
 
 
-
 
NC_011369  Rleg2_4016  binding-protein-dependent transport systems inner membrane component  36.14 
 
 
319 aa  170  3e-41  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_3328  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
318 aa  170  3e-41  Sinorhizobium medicae WSM419  Bacteria  normal  0.670475  normal  0.953703 
 
 
-
 
NC_013526  Tter_2024  binding-protein-dependent transport systems inner membrane component  34.36 
 
 
303 aa  170  3e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000249122  n/a   
 
 
-
 
NC_012850  Rleg_4345  binding-protein-dependent transport systems inner membrane component  35.83 
 
 
319 aa  170  3e-41  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.0000915897 
 
 
-
 
NC_013517  Sterm_4049  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
292 aa  169  8e-41  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3792  binding-protein-dependent transport systems inner membrane component  37.28 
 
 
285 aa  168  9e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.168129  normal 
 
 
-
 
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