Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_0905 |
Symbol | |
ID | 4205963 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | + |
Start bp | 1037412 |
End bp | 1038281 |
Gene Length | 870 bp |
Protein Length | 289 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 642565463 |
Product | transmembrane permease MsmF |
Protein accession | YP_698229 |
Protein GI | 110803946 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1175] ABC-type sugar transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0122469 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAAGA TAAGAGAAAA GATAATGGGA ATGGCTTTTT TTGGCCCAGC ATTAGTGTTA CTAACATTAT TTTTGTTTAT TCCTATGATT TTAACTTTGA TATTTAGTTT TACAGACTTT TTTACATTAA ATCCTAGCGC AACTAAGTTT GTTGGACTTA GAAATTATAC AAGATTATTT AACGATGAGT TATTTGGAAA AGCATTTTTT AATACAATAA AATTTGCACT TGTAGTTGTA CCATTGCAGA TGGGAGGAGC ATTACTTTTA GCACTTGGCA TAAATAAAGT TACTCATTGT AAAAAATATT TCAAAATAGC ATTTTTTATT CCAGTAGTAA TGTCACTTGC AGTAGTATCA ACTTTGTGGA TGCAGATTTA TAGCCCTGAA GGTATATTAA ATAATATGTT AAATGCTATT GGAATATCAT CTCAGCCATT TATATTCAGT AAAGATCAAG CACTTAATTC TATATCAGCA TTAAGTATAT GGCAAGGAAT GGGATATCAG ATGATTATAT TTCTAGGTGG CTTGCAGGCT ATTTCTCCTA GTTTATATGA AGCAGCAGAA ATTGATAATG CAAGTGGATG GGGCAAATTT TGGAATGTAA CAGTTCCAGA GCTTAAACCA ATTTCAATAT ATATATTATT AACAATTACA ATAGGAGCAT TTAAATTATT AGTTCAGCCT ATGGTGATGA CAGGAGGAGG ACCAGCCTTC TCTACATATT CACTTGTGTA CTATATCTAT GATACTGGTA CAGTTAATTG GGATATGGGA TATTCTTCAG CAATGGCAAT TGTATTTGCA ATTATAGTAA TTGCACTTGC AGGTATTCAA TATAAACTTA CAAACAAAAA GGAGGATTAA
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Protein sequence | MNKIREKIMG MAFFGPALVL LTLFLFIPMI LTLIFSFTDF FTLNPSATKF VGLRNYTRLF NDELFGKAFF NTIKFALVVV PLQMGGALLL ALGINKVTHC KKYFKIAFFI PVVMSLAVVS TLWMQIYSPE GILNNMLNAI GISSQPFIFS KDQALNSISA LSIWQGMGYQ MIIFLGGLQA ISPSLYEAAE IDNASGWGKF WNVTVPELKP ISIYILLTIT IGAFKLLVQP MVMTGGGPAF STYSLVYYIY DTGTVNWDMG YSSAMAIVFA IIVIALAGIQ YKLTNKKED
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