| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1290 |
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| Symbol | |
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| ID | 8709240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1540639 |
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| End bp | 1541574 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646483377 |
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| Product | ABC transporter, permease protein |
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| Protein accession | YP_003374478 |
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| Protein GI | 283783724 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACAAG TAGATCAGAA ATCTCATTCA ACTCCTCTGA GGAAAAAATT TGGTGGTATA
GCAAAAGTAA CCGCTGCGTT GTCTCGAACC TTCTCCTTTC GCAATGTGGC AGTGACATTT
CTGGTTGCTT ATTTCGCGAT TTTCCTTGCC TATCCTATTT ATAAAGCGTT TGCCGGCAGC
TTCCACGAGT GGAATCCGTT GGTTGGAACG TACAACTGGG TTGGGTTCGA TAATTTCAAG
CAGATTTTAA CCGACGGTTT ATTCTGGAAG TCAATCGGGA ATACAGCTGT TTTCATGGCA
ATATCCGTGA TTTTCCGCAT TGTTCTCGGT TTGGGTTTGG CAATGTTGCT CAGCTCCAAG
CTCGTGCATT GCAAAGATTC GCTGCGTGGC CTATTTTATA TGCCAACGAT TACGCCACTT
GTGGCAGTAA GCTTCGTGTG GATGTGGATG TTTGATCCGC AGTTTGGCAT GATTGATAAA
GTCACTGGAT TGAATATTAA TTGGTTGCAC AGTTCTACTT GGGCTATGCC GGCAATTATT
ATCATGACCA TTTGGAAAGA TTTTGGCTAC GCAACCGTGC TATATTTGGC AGGCTTAATG
AACCTTCCCA AAGACGTGTA TGAAGCAGCC GATATTGATG GTGCTAACAG TGTGCAAAAA
TTCTTCCGCA TTACTTTGCC GCTACTCAAA CCGACAACGT TATTTATTGT GATTACGTCA
ATGATTGCTT ACCTGCAAGC CTACGTGCAG ATTTTGGTTA TGACTAACGG TGGCCCAGGA
ACAGCAACTT ACACTATTAG CTACTTGATC TTTGATCAAG CCTTCCAAAA GTATAACTTT
GGTATTGCGT CAGCCATGAG CGTAGTGCTT TTTATCTTTA CTGGCGTACT CACGATAATC
ATGTTCAAAG CTTCTGAGGA CGGTGAGTTG GTATGA
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| Protein sequence | MEQVDQKSHS TPLRKKFGGI AKVTAALSRT FSFRNVAVTF LVAYFAIFLA YPIYKAFAGS
FHEWNPLVGT YNWVGFDNFK QILTDGLFWK SIGNTAVFMA ISVIFRIVLG LGLAMLLSSK
LVHCKDSLRG LFYMPTITPL VAVSFVWMWM FDPQFGMIDK VTGLNINWLH SSTWAMPAII
IMTIWKDFGY ATVLYLAGLM NLPKDVYEAA DIDGANSVQK FFRITLPLLK PTTLFIVITS
MIAYLQAYVQ ILVMTNGGPG TATYTISYLI FDQAFQKYNF GIASAMSVVL FIFTGVLTII
MFKASEDGEL V
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