Gene Rcas_3564 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3564 
Symbol 
ID5541065 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4653848 
End bp4654798 
Gene Length951 bp 
Protein Length316 aa 
Translation table11 
GC content57% 
IMG OID640895683 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001433631 
Protein GI156743502 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1175] ABC-type sugar transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.264329 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATACGC CTCATCCTCA ACCACGCATC GTCGTGCATC CCGGCACACG GCGAACCAAC 
CGCCGGCAGC GCATCGAAGC GATCAACGCC TATATTTTTA TGGCGCCGGC CATCCTGGGT
TTGCTCTTCT TCACGCTGGG TCCCATGGTC GCCTCATTGT TGCTCAGTTT CACTGAGTAC
AATATTTTGA CCGATCCACG CTGGAATGGT CTGGCGAACT ACGAACGACT CTTCAACGAC
AAACTGTTCT GGCAGTCGCT CAGGGTCAGC GCCATCTATT CGATCATCAG CGTGCCGTTG
GGTCTGGTTG TCGCCCTGGG GCTGGCGCTG CTCCTGAACC ACAAAATGCG CGGAATACTG
TTTTTTCGCT CGGTGTACTA CCTGCCGACG GTTATTTCCG GCGTTGGTGT CGCAATGCTC
TGGCGCTGGC TGTTCAATGG CGACTACGGC ATTATCAATA TTGTGCTGCG CAATGTTGGC
ATCCGCGGTC CCAACTGGCT GTTCGACGAA ACGTGGGCGC TGGTGGCGTT GATTATCGCC
AGTCTGTGGG GAGTTGGCGG AACAATGCTG ATCTTCCTGG CAGGGTTGCA GGGCATTCCG
CAGGAATTGT ACGAAGCCGC CGAGATCGAC GGCGCCGGAC GGTGGCGACA GTTTACCAGC
ATCACGCTGC CGATGATCTC GCATGTCACC TTCTTCAACC TGGTGCTGGG AGTTATTGGC
GCATTGCAGG TTTTCACCGA CGCGTATGTG ATTACCGGCG GCGGACCGAA CAACGCCACG
CTTTTCCTTT CGGTCTATCT CTATCGACAC GCCTTCCAAT ACCTGAACTT TGGCTATGCC
GCCGCCGTGG CGTGGGTGCT GTTCCTGATC GTTCTGGCGC TGACCTTGCT GGTCTTCAAA
TCGTCGCCGC TCTGGGTTTA CTACGAGAGT GAGCGACCGG GGAGGAACTG A
 
Protein sequence
MDTPHPQPRI VVHPGTRRTN RRQRIEAINA YIFMAPAILG LLFFTLGPMV ASLLLSFTEY 
NILTDPRWNG LANYERLFND KLFWQSLRVS AIYSIISVPL GLVVALGLAL LLNHKMRGIL
FFRSVYYLPT VISGVGVAML WRWLFNGDYG IINIVLRNVG IRGPNWLFDE TWALVALIIA
SLWGVGGTML IFLAGLQGIP QELYEAAEID GAGRWRQFTS ITLPMISHVT FFNLVLGVIG
ALQVFTDAYV ITGGGPNNAT LFLSVYLYRH AFQYLNFGYA AAVAWVLFLI VLALTLLVFK
SSPLWVYYES ERPGRN