| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0737 |
|---|
| Symbol | |
|---|
| ID | 8131662 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 858237 |
|---|
| End bp | 859118 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644864021 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_003016327 |
|---|
| Protein GI | 253687137 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGTATA AACCTAAAAT GAATAGGCTT TATAACATCA ACGGCTGGGC TTTTGTCGCT
ACCGCCGTTG GGTTAATTGC CTTAATGACG ATATACCCTA TTTTCAAATC ACTTTGGCTC
TCTTTTCAGT CTGGCCGGGG TGTGGTGACA CAATTTGTTG GCCTGGGAAA TATCATTCGT
TTATTCAATG ATCCTATGTT CAAAACGGCA CTGTGGAATA CATTGACCTT TCTGGTAATC
CAAGTGCCTA TTATGATTTT ATTATCATTG GCTATTTCTT CTTGCTTGAA TTCGTCTCAG
CTTAAATATC GCCAGTGGTT TAGAATAGCG ATCTTTCTGC CTTGTGTGAC CTCACTGGTT
GCCTACTCAA TTCTTTTCAA GAGTATGTTT GAACTGGACG GGGTGATTAA TTCATTCTTA
CTGTTTATTC ATGTTATTGA CGATCCGATT CCGTGGCTAT CCGATCCTTT CTGGGCGAAG
GTGACCATCA TTATTGCCAT TACATGGCGT TGGACGGGAT ATAATATGAT ATTCTATCTT
TCCGCGATGC AGAATATTGA TAAGTCGATT TACGAGGCTG CCCGAGTTGA TGGCGTCAGC
CCTATTAAGC AATTTTTCTT CATTACGATA CCCTTACTGA AACCGGTTAT TCTTTTTACC
AGCGTGACAT CAACCATTGG TACATTACAG CTATTTGATG AAGCGATGAA TATCACTAAT
GGTGGCCCGG CAAATGCGAC GCTGACGTTA TCGCTTTATA TTTATAACCT GTCATTCAAG
TTTGTGCCTA ACTTTGGCTA TGCGGCAACG GTTTCGTACG TCATTGTTGT TTTCTCAGCA
ATATTGGCAC TGATTCAGTT TAAAGCAGCA CGGAAGGGAT GA
|
|---|
| Protein sequence | MMYKPKMNRL YNINGWAFVA TAVGLIALMT IYPIFKSLWL SFQSGRGVVT QFVGLGNIIR
LFNDPMFKTA LWNTLTFLVI QVPIMILLSL AISSCLNSSQ LKYRQWFRIA IFLPCVTSLV
AYSILFKSMF ELDGVINSFL LFIHVIDDPI PWLSDPFWAK VTIIIAITWR WTGYNMIFYL
SAMQNIDKSI YEAARVDGVS PIKQFFFITI PLLKPVILFT SVTSTIGTLQ LFDEAMNITN
GGPANATLTL SLYIYNLSFK FVPNFGYAAT VSYVIVVFSA ILALIQFKAA RKG
|
|---|
| |