More than 300 homologs were found in PanDaTox collection
for query gene Krad_3565 on replicon NC_009664
Organism: Kineococcus radiotolerans SRS30216



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009664  Krad_3565  binding-protein-dependent transport systems inner membrane component  100 
 
 
316 aa  634    Kineococcus radiotolerans SRS30216  Bacteria  normal  0.702273  normal  0.0136241 
 
 
-
 
NC_013093  Amir_1786  binding-protein-dependent transport systems inner membrane component  49.48 
 
 
335 aa  296  4e-79  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0186858  n/a   
 
 
-
 
NC_013595  Sros_3307  sugar transport system (permease)  50.52 
 
 
325 aa  293  3e-78  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.175437 
 
 
-
 
NC_007333  Tfu_0935  multiple sugar transport system permease protein  49.65 
 
 
328 aa  283  3.0000000000000004e-75  Thermobifida fusca YX  Bacteria  normal  0.36894  n/a   
 
 
-
 
NC_009380  Strop_1558  binding-protein-dependent transport systems inner membrane component  51.67 
 
 
322 aa  281  7.000000000000001e-75  Salinispora tropica CNB-440  Bacteria  normal  0.946878  normal  0.637369 
 
 
-
 
NC_013595  Sros_7172  sugar transport system (permease)  52.3 
 
 
323 aa  276  4e-73  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0377247 
 
 
-
 
NC_013131  Caci_5331  binding-protein-dependent transport systems inner membrane component  49.31 
 
 
324 aa  274  1.0000000000000001e-72  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.455385  normal  0.753701 
 
 
-
 
NC_008578  Acel_0131  binding-protein-dependent transport systems inner membrane component  51.38 
 
 
320 aa  273  2.0000000000000002e-72  Acidothermus cellulolyticus 11B  Bacteria  normal  0.495335  normal 
 
 
-
 
NC_009953  Sare_1507  binding-protein-dependent transport systems inner membrane component  51.94 
 
 
323 aa  273  3e-72  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000203032 
 
 
-
 
NC_014165  Tbis_0841  binding-protein-dependent transporter inner membrane component  48.52 
 
 
337 aa  270  2.9999999999999997e-71  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.203798 
 
 
-
 
NC_013510  Tcur_1735  binding-protein-dependent transport systems inner membrane component  48.05 
 
 
328 aa  266  4e-70  Thermomonospora curvata DSM 43183  Bacteria  normal  0.152171  n/a   
 
 
-
 
NC_014151  Cfla_2400  binding-protein-dependent transport systems inner membrane component  45.95 
 
 
338 aa  265  1e-69  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00254991 
 
 
-
 
NC_009953  Sare_0392  binding-protein-dependent transport systems inner membrane component  49.82 
 
 
328 aa  260  2e-68  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00382252 
 
 
-
 
NC_013521  Sked_08410  carbohydrate ABC transporter membrane protein  45.86 
 
 
379 aa  259  5.0000000000000005e-68  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.166742 
 
 
-
 
NC_009921  Franean1_5460  binding-protein-dependent transport systems inner membrane component  47.4 
 
 
334 aa  259  6e-68  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_19290  carbohydrate ABC transporter membrane protein  44.79 
 
 
328 aa  259  6e-68  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0926617  n/a   
 
 
-
 
NC_013526  Tter_2645  binding-protein-dependent transport systems inner membrane component  47.7 
 
 
311 aa  253  3e-66  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0400  binding-protein-dependent transport systems inner membrane component  46.94 
 
 
331 aa  251  1e-65  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_2838  binding-protein-dependent transport systems inner membrane component  45.99 
 
 
346 aa  251  1e-65  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.073402  normal 
 
 
-
 
NC_012669  Bcav_0555  binding-protein-dependent transport systems inner membrane component  46.42 
 
 
328 aa  250  3e-65  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.913769 
 
 
-
 
NC_013947  Snas_6281  binding-protein-dependent transport systems inner membrane component  47.2 
 
 
309 aa  245  6e-64  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1881  binding-protein-dependent transport systems inner membrane component  46.78 
 
 
334 aa  244  9.999999999999999e-64  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.804974 
 
 
-
 
NC_009664  Krad_3963  binding-protein-dependent transport systems inner membrane component  47.45 
 
 
326 aa  243  3e-63  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0380307  normal  0.973635 
 
 
-
 
NC_013530  Xcel_2612  binding-protein-dependent transport systems inner membrane component  43.55 
 
 
365 aa  240  2.9999999999999997e-62  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1892  binding-protein-dependent transporter inner membrane component  49.65 
 
 
323 aa  238  8e-62  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.254377 
 
 
-
 
NC_007908  Rfer_1100  binding-protein-dependent transport systems inner membrane component  39 
 
 
311 aa  206  4e-52  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.0016702  n/a   
 
 
-
 
NC_013946  Mrub_0285  binding-protein-dependent transport systems inner membrane component  38.83 
 
 
327 aa  204  1e-51  Meiothermus ruber DSM 1279  Bacteria  normal  0.0175684  normal  0.996665 
 
 
-
 
NC_009523  RoseRS_2895  binding-protein-dependent transport systems inner membrane component  37.46 
 
 
316 aa  204  2e-51  Roseiflexus sp. RS-1  Bacteria  normal  0.0497455  normal 
 
 
-
 
NC_013947  Snas_2734  binding-protein-dependent transport systems inner membrane component  38.24 
 
 
308 aa  202  7e-51  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.172129  normal  0.124427 
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  40.96 
 
 
291 aa  202  7e-51  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_011899  Hore_04280  binding-protein-dependent transport systems inner membrane component  39.93 
 
 
302 aa  201  9.999999999999999e-51  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6585  lactose transport system (permease)  38.51 
 
 
306 aa  200  1.9999999999999998e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008010  Dgeo_2860  binding-protein-dependent transport systems inner membrane component  38.82 
 
 
322 aa  198  9e-50  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.396467  n/a   
 
 
-
 
NC_013205  Aaci_1216  binding-protein-dependent transport systems inner membrane component  37.28 
 
 
315 aa  198  1.0000000000000001e-49  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.00000228392  n/a   
 
 
-
 
NC_013521  Sked_11610  permease component of ABC-type sugar transporter  36.9 
 
 
311 aa  196  5.000000000000001e-49  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.117578  normal  0.102082 
 
 
-
 
NC_009767  Rcas_1880  binding-protein-dependent transport systems inner membrane component  37.59 
 
 
316 aa  195  7e-49  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.2607 
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  37.71 
 
 
321 aa  193  3e-48  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  36.73 
 
 
298 aa  189  5e-47  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06940  hypothetical protein  35.18 
 
 
329 aa  189  5.999999999999999e-47  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013526  Tter_2024  binding-protein-dependent transport systems inner membrane component  39.43 
 
 
303 aa  187  3e-46  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000249122  n/a   
 
 
-
 
NC_013131  Caci_2030  binding-protein-dependent transport systems inner membrane component  40 
 
 
297 aa  186  4e-46  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.185813 
 
 
-
 
NC_012852  Rleg_6113  binding-protein-dependent transport systems inner membrane component  36.86 
 
 
286 aa  186  6e-46  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.453278  normal 
 
 
-
 
NC_011371  Rleg2_6525  binding-protein-dependent transport systems inner membrane component  36.86 
 
 
286 aa  186  7e-46  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.728774  normal  0.302995 
 
 
-
 
NC_013411  GYMC61_2730  binding-protein-dependent transport systems inner membrane component  35.42 
 
 
300 aa  184  2.0000000000000003e-45  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013174  Jden_0512  binding-protein-dependent transport systems inner membrane component  36.16 
 
 
318 aa  183  4.0000000000000006e-45  Jonesia denitrificans DSM 20603  Bacteria  hitchhiker  0.000000473727  hitchhiker  0.00124128 
 
 
-
 
NC_011881  Achl_4622  binding-protein-dependent transport systems inner membrane component  36.07 
 
 
317 aa  182  9.000000000000001e-45  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  36.31 
 
 
309 aa  181  1e-44  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011898  Ccel_2111  binding-protein-dependent transport systems inner membrane component  33.44 
 
 
306 aa  179  4.999999999999999e-44  Clostridium cellulolyticum H10  Bacteria  normal  0.157384  n/a   
 
 
-
 
NC_013526  Tter_2302  binding-protein-dependent transport systems inner membrane component  33.8 
 
 
320 aa  177  2e-43  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.253823  n/a   
 
 
-
 
NC_011661  Dtur_0507  binding-protein-dependent transport systems inner membrane component  40.15 
 
 
299 aa  177  2e-43  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000030377  n/a   
 
 
-
 
NC_010003  Pmob_0827  binding-protein-dependent transport systems inner membrane component  37.92 
 
 
299 aa  176  7e-43  Petrotoga mobilis SJ95  Bacteria  normal  0.175132  n/a   
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  38.18 
 
 
306 aa  174  9.999999999999999e-43  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2809  binding-protein-dependent transport systems inner membrane component  38.79 
 
 
279 aa  174  1.9999999999999998e-42  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.232459 
 
 
-
 
NC_012669  Bcav_0311  binding-protein-dependent transport systems inner membrane component  35.47 
 
 
321 aa  172  6.999999999999999e-42  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2573  binding-protein-dependent transport systems inner membrane component  35.86 
 
 
309 aa  171  1e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1022  binding-protein-dependent transport systems inner membrane component  32.78 
 
 
294 aa  171  2e-41  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  34.25 
 
 
309 aa  171  2e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  36.24 
 
 
305 aa  169  4e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0828  binding-protein-dependent transport systems inner membrane component  34.23 
 
 
316 aa  170  4e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.194369 
 
 
-
 
NC_014212  Mesil_2465  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
296 aa  169  6e-41  Meiothermus silvanus DSM 9946  Bacteria  normal  0.603266  normal  0.170133 
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  35.74 
 
 
287 aa  169  7e-41  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0044  binding-protein-dependent transport systems inner membrane component  37.64 
 
 
304 aa  169  8e-41  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  34.67 
 
 
299 aa  167  2e-40  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2047  binding-protein-dependent transport systems inner membrane component  34.01 
 
 
294 aa  167  2e-40  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.550241  n/a   
 
 
-
 
NC_012917  PC1_0737  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
293 aa  167  2.9999999999999998e-40  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0728  binding-protein-dependent transport systems inner membrane component  35 
 
 
313 aa  167  2.9999999999999998e-40  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000239391  normal 
 
 
-
 
NC_013411  GYMC61_0532  binding-protein-dependent transport systems inner membrane component  40.57 
 
 
311 aa  167  2.9999999999999998e-40  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013421  Pecwa_0973  binding-protein-dependent transport systems inner membrane component  33.67 
 
 
293 aa  166  4e-40  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3142  binding-protein-dependent transport systems inner membrane component  34.22 
 
 
325 aa  165  8e-40  Arthrobacter sp. FB24  Bacteria  normal  0.406302  n/a   
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  32.55 
 
 
313 aa  165  9e-40  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_1606  ABC transporter sugar permease  35.47 
 
 
293 aa  164  1.0000000000000001e-39  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  35.82 
 
 
315 aa  164  2.0000000000000002e-39  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  36.55 
 
 
300 aa  164  2.0000000000000002e-39  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  34.49 
 
 
295 aa  164  2.0000000000000002e-39  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2532  binding-protein-dependent transport systems inner membrane component  35.03 
 
 
417 aa  164  2.0000000000000002e-39  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.636087 
 
 
-
 
NC_010577  XfasM23_1549  binding-protein-dependent transport systems inner membrane component  35.09 
 
 
293 aa  164  2.0000000000000002e-39  Xylella fastidiosa M23  Bacteria  normal  0.563461  n/a   
 
 
-
 
NC_012669  Bcav_0801  binding-protein-dependent transport systems inner membrane component  35.58 
 
 
319 aa  163  3e-39  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.836257  decreased coverage  0.00115511 
 
 
-
 
NC_011886  Achl_3270  binding-protein-dependent transport systems inner membrane component  33.44 
 
 
321 aa  162  6e-39  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_014210  Ndas_0559  binding-protein-dependent transport systems inner membrane component  34.98 
 
 
305 aa  162  6e-39  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_0382  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
296 aa  162  7e-39  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_27700  permease component of ABC-type sugar transporter  34.37 
 
 
321 aa  162  7e-39  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479477 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  31.27 
 
 
306 aa  162  8.000000000000001e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_013131  Caci_4319  binding-protein-dependent transport systems inner membrane component  35.13 
 
 
312 aa  162  8.000000000000001e-39  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.778687  hitchhiker  0.00185272 
 
 
-
 
NC_009486  Tpet_0117  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
300 aa  162  8.000000000000001e-39  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0115  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
300 aa  162  8.000000000000001e-39  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2055  binding-protein-dependent transport systems inner membrane component  34.92 
 
 
415 aa  161  1e-38  Meiothermus silvanus DSM 9946  Bacteria  normal  0.33288  normal  0.443347 
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  34.48 
 
 
317 aa  161  1e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0774  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
293 aa  162  1e-38  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013745  Htur_4489  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
308 aa  161  1e-38  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.283214  n/a   
 
 
-
 
NC_012669  Bcav_2264  binding-protein-dependent transport systems inner membrane component  32.04 
 
 
307 aa  161  1e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.277747  normal 
 
 
-
 
NC_013721  HMPREF0424_1290  ABC transporter, permease protein  35.19 
 
 
311 aa  160  2e-38  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_012028  Hlac_2863  binding-protein-dependent transport systems inner membrane component  35.03 
 
 
356 aa  161  2e-38  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_014210  Ndas_2034  binding-protein-dependent transport systems inner membrane component  33.87 
 
 
323 aa  159  6e-38  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.059557  normal  0.598754 
 
 
-
 
NC_009664  Krad_2143  binding-protein-dependent transport systems inner membrane component  34.9 
 
 
318 aa  159  6e-38  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_1549  MalF-type ABC sugar transport systems permease component  32.4 
 
 
317 aa  159  7e-38  Bifidobacterium longum DJO10A  Bacteria  normal  0.649517  n/a   
 
 
-
 
NC_012912  Dd1591_1969  binding-protein-dependent transport systems inner membrane component  35.69 
 
 
296 aa  159  8e-38  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3982  binding-protein-dependent transport systems inner membrane component  34.75 
 
 
316 aa  158  1e-37  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_2034  binding-protein-dependent transport systems inner membrane component  35.34 
 
 
296 aa  157  2e-37  Dickeya dadantii Ech703  Bacteria  normal  0.963086  n/a   
 
 
-
 
NC_012848  Rleg_4872  binding-protein-dependent transport systems inner membrane component  30.7 
 
 
310 aa  157  2e-37  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.181942  normal  0.51159 
 
 
-
 
NC_012917  PC1_1907  binding-protein-dependent transport systems inner membrane component  36.04 
 
 
296 aa  157  3e-37  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0961638  n/a   
 
 
-
 
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