More than 300 homologs were found in PanDaTox collection
for query gene Sked_08410 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_08410  carbohydrate ABC transporter membrane protein  100 
 
 
379 aa  763    Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.166742 
 
 
-
 
NC_014151  Cfla_2400  binding-protein-dependent transport systems inner membrane component  74.27 
 
 
338 aa  494  1e-139  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00254991 
 
 
-
 
NC_013174  Jden_1881  binding-protein-dependent transport systems inner membrane component  74.61 
 
 
334 aa  493  9.999999999999999e-139  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.804974 
 
 
-
 
NC_012669  Bcav_2838  binding-protein-dependent transport systems inner membrane component  72.06 
 
 
346 aa  480  1e-134  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.073402  normal 
 
 
-
 
NC_011886  Achl_0400  binding-protein-dependent transport systems inner membrane component  71.96 
 
 
331 aa  442  1e-123  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013093  Amir_1786  binding-protein-dependent transport systems inner membrane component  56.6 
 
 
335 aa  360  3e-98  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0186858  n/a   
 
 
-
 
NC_013530  Xcel_2612  binding-protein-dependent transport systems inner membrane component  52.4 
 
 
365 aa  338  8e-92  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0935  multiple sugar transport system permease protein  48.9 
 
 
328 aa  298  1e-79  Thermobifida fusca YX  Bacteria  normal  0.36894  n/a   
 
 
-
 
NC_009953  Sare_0392  binding-protein-dependent transport systems inner membrane component  51.88 
 
 
328 aa  286  2.9999999999999996e-76  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00382252 
 
 
-
 
NC_013131  Caci_5331  binding-protein-dependent transport systems inner membrane component  49.15 
 
 
324 aa  283  2.0000000000000002e-75  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.455385  normal  0.753701 
 
 
-
 
NC_013595  Sros_7172  sugar transport system (permease)  52.96 
 
 
323 aa  283  4.0000000000000003e-75  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0377247 
 
 
-
 
NC_013595  Sros_3307  sugar transport system (permease)  47.96 
 
 
325 aa  280  3e-74  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.175437 
 
 
-
 
NC_014165  Tbis_0841  binding-protein-dependent transporter inner membrane component  49.5 
 
 
337 aa  279  6e-74  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.203798 
 
 
-
 
NC_013510  Tcur_1735  binding-protein-dependent transport systems inner membrane component  47.74 
 
 
328 aa  276  3e-73  Thermomonospora curvata DSM 43183  Bacteria  normal  0.152171  n/a   
 
 
-
 
NC_009380  Strop_1558  binding-protein-dependent transport systems inner membrane component  52.08 
 
 
322 aa  275  1.0000000000000001e-72  Salinispora tropica CNB-440  Bacteria  normal  0.946878  normal  0.637369 
 
 
-
 
NC_009953  Sare_1507  binding-protein-dependent transport systems inner membrane component  50.86 
 
 
323 aa  272  8.000000000000001e-72  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000203032 
 
 
-
 
NC_009664  Krad_3565  binding-protein-dependent transport systems inner membrane component  46.69 
 
 
316 aa  270  2.9999999999999997e-71  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.702273  normal  0.0136241 
 
 
-
 
NC_008578  Acel_0131  binding-protein-dependent transport systems inner membrane component  48.2 
 
 
320 aa  263  4e-69  Acidothermus cellulolyticus 11B  Bacteria  normal  0.495335  normal 
 
 
-
 
NC_013947  Snas_6281  binding-protein-dependent transport systems inner membrane component  46.62 
 
 
309 aa  252  9.000000000000001e-66  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1892  binding-protein-dependent transporter inner membrane component  50.52 
 
 
323 aa  250  2e-65  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.254377 
 
 
-
 
NC_009921  Franean1_5460  binding-protein-dependent transport systems inner membrane component  47.21 
 
 
334 aa  248  1e-64  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_19290  carbohydrate ABC transporter membrane protein  41.82 
 
 
328 aa  224  2e-57  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0926617  n/a   
 
 
-
 
NC_013526  Tter_2645  binding-protein-dependent transport systems inner membrane component  40.95 
 
 
311 aa  222  7e-57  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0555  binding-protein-dependent transport systems inner membrane component  42.07 
 
 
328 aa  214  1.9999999999999998e-54  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.913769 
 
 
-
 
NC_009664  Krad_3963  binding-protein-dependent transport systems inner membrane component  41.16 
 
 
326 aa  211  2e-53  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0380307  normal  0.973635 
 
 
-
 
NC_008010  Dgeo_2860  binding-protein-dependent transport systems inner membrane component  41.67 
 
 
322 aa  205  8e-52  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.396467  n/a   
 
 
-
 
NC_011899  Hore_04280  binding-protein-dependent transport systems inner membrane component  37.75 
 
 
302 aa  191  2e-47  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2895  binding-protein-dependent transport systems inner membrane component  35.28 
 
 
316 aa  191  2e-47  Roseiflexus sp. RS-1  Bacteria  normal  0.0497455  normal 
 
 
-
 
NC_013946  Mrub_0285  binding-protein-dependent transport systems inner membrane component  37.62 
 
 
327 aa  189  8e-47  Meiothermus ruber DSM 1279  Bacteria  normal  0.0175684  normal  0.996665 
 
 
-
 
NC_007908  Rfer_1100  binding-protein-dependent transport systems inner membrane component  37.98 
 
 
311 aa  189  9e-47  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.0016702  n/a   
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  36.18 
 
 
298 aa  183  5.0000000000000004e-45  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1880  binding-protein-dependent transport systems inner membrane component  35.45 
 
 
316 aa  181  2e-44  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.2607 
 
 
-
 
NC_013205  Aaci_1216  binding-protein-dependent transport systems inner membrane component  36.3 
 
 
315 aa  181  2.9999999999999997e-44  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.00000228392  n/a   
 
 
-
 
NC_011898  Ccel_2111  binding-protein-dependent transport systems inner membrane component  35.22 
 
 
306 aa  172  1e-41  Clostridium cellulolyticum H10  Bacteria  normal  0.157384  n/a   
 
 
-
 
NC_009784  VIBHAR_06940  hypothetical protein  33.45 
 
 
329 aa  172  1e-41  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_6585  lactose transport system (permease)  37.19 
 
 
306 aa  169  6e-41  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
311 aa  167  2e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_013131  Caci_2030  binding-protein-dependent transport systems inner membrane component  37.97 
 
 
297 aa  167  2e-40  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.185813 
 
 
-
 
NC_013947  Snas_2734  binding-protein-dependent transport systems inner membrane component  35.19 
 
 
308 aa  166  5.9999999999999996e-40  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.172129  normal  0.124427 
 
 
-
 
NC_013172  Bfae_29410  carbohydrate ABC transporter membrane protein  33.22 
 
 
322 aa  166  6.9999999999999995e-40  Brachybacterium faecium DSM 4810  Bacteria  normal  0.899558  n/a   
 
 
-
 
NC_013521  Sked_07100  carbohydrate ABC transporter membrane protein  32.29 
 
 
318 aa  165  1.0000000000000001e-39  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.790586  normal 
 
 
-
 
NC_013521  Sked_11610  permease component of ABC-type sugar transporter  33.22 
 
 
311 aa  164  2.0000000000000002e-39  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.117578  normal  0.102082 
 
 
-
 
NC_013411  GYMC61_0532  binding-protein-dependent transport systems inner membrane component  40.42 
 
 
311 aa  163  4.0000000000000004e-39  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_2875  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
318 aa  163  4.0000000000000004e-39  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal  0.0272583 
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  35.07 
 
 
295 aa  163  6e-39  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2264  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
307 aa  162  1e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.277747  normal 
 
 
-
 
NC_011831  Cagg_0728  binding-protein-dependent transport systems inner membrane component  34.7 
 
 
313 aa  156  5.0000000000000005e-37  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000239391  normal 
 
 
-
 
NC_010003  Pmob_0827  binding-protein-dependent transport systems inner membrane component  31.77 
 
 
299 aa  155  9e-37  Petrotoga mobilis SJ95  Bacteria  normal  0.175132  n/a   
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  34.13 
 
 
306 aa  154  2e-36  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_009832  Spro_2846  binding-protein-dependent transport systems inner membrane component  34.39 
 
 
313 aa  152  8.999999999999999e-36  Serratia proteamaculans 568  Bacteria  normal  0.149421  normal  0.0970123 
 
 
-
 
NC_013421  Pecwa_0973  binding-protein-dependent transport systems inner membrane component  33.09 
 
 
293 aa  152  1e-35  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0647  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
325 aa  150  4e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  32.7 
 
 
321 aa  150  5e-35  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0512  binding-protein-dependent transport systems inner membrane component  34.06 
 
 
318 aa  149  6e-35  Jonesia denitrificans DSM 20603  Bacteria  hitchhiker  0.000000473727  hitchhiker  0.00124128 
 
 
-
 
NC_012917  PC1_0737  binding-protein-dependent transport systems inner membrane component  32.73 
 
 
293 aa  149  6e-35  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3522  binding-protein-dependent transport systems inner membrane component  31 
 
 
331 aa  147  2.0000000000000003e-34  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0409  binding-protein-dependent transport systems inner membrane component  33.7 
 
 
300 aa  147  2.0000000000000003e-34  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0796  binding-protein-dependent transport systems inner membrane component  37.99 
 
 
312 aa  147  3e-34  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.633875  n/a   
 
 
-
 
NC_013526  Tter_2573  binding-protein-dependent transport systems inner membrane component  34.27 
 
 
309 aa  146  5e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0321  binding-protein-dependent transport systems inner membrane component  34.85 
 
 
420 aa  146  5e-34  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0339  binding-protein-dependent transport systems inner membrane component  34.85 
 
 
420 aa  146  7.0000000000000006e-34  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3671  binding-protein-dependent transport systems inner membrane component  30.4 
 
 
332 aa  145  1e-33  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1516  binding-protein-dependent transport systems inner membrane component  32.98 
 
 
315 aa  145  1e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0640497  normal 
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  33.58 
 
 
306 aa  145  1e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  35.48 
 
 
299 aa  145  1e-33  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_013174  Jden_0102  binding-protein-dependent transport systems inner membrane component  31.19 
 
 
310 aa  144  2e-33  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.0186923 
 
 
-
 
NC_011371  Rleg2_6525  binding-protein-dependent transport systems inner membrane component  31.21 
 
 
286 aa  144  2e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.728774  normal  0.302995 
 
 
-
 
NC_012028  Hlac_2863  binding-protein-dependent transport systems inner membrane component  35.23 
 
 
356 aa  145  2e-33  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_012852  Rleg_6113  binding-protein-dependent transport systems inner membrane component  30.85 
 
 
286 aa  144  3e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.453278  normal 
 
 
-
 
NC_011661  Dtur_0507  binding-protein-dependent transport systems inner membrane component  33.58 
 
 
299 aa  144  3e-33  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000030377  n/a   
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
299 aa  144  3e-33  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0663  binding-protein-dependent transport systems inner membrane component  30.63 
 
 
333 aa  143  4e-33  Dickeya zeae Ech1591  Bacteria  normal  0.440104  n/a   
 
 
-
 
NC_013521  Sked_06580  carbohydrate ABC transporter membrane protein  33.95 
 
 
318 aa  144  4e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013745  Htur_4489  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
308 aa  143  5e-33  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.283214  n/a   
 
 
-
 
NC_012669  Bcav_2817  binding-protein-dependent transport systems inner membrane component  34.08 
 
 
310 aa  143  5e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.822068  normal 
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  31.53 
 
 
300 aa  143  5e-33  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  31.51 
 
 
309 aa  143  5e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013131  Caci_4319  binding-protein-dependent transport systems inner membrane component  30.5 
 
 
312 aa  142  9.999999999999999e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.778687  hitchhiker  0.00185272 
 
 
-
 
NC_013521  Sked_27700  permease component of ABC-type sugar transporter  35.82 
 
 
321 aa  142  9.999999999999999e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479477 
 
 
-
 
NC_013946  Mrub_2809  binding-protein-dependent transport systems inner membrane component  34.25 
 
 
279 aa  141  1.9999999999999998e-32  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.232459 
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  33.55 
 
 
313 aa  141  1.9999999999999998e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  31.32 
 
 
315 aa  141  1.9999999999999998e-32  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2024  binding-protein-dependent transport systems inner membrane component  31.9 
 
 
303 aa  140  3.9999999999999997e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000249122  n/a   
 
 
-
 
NC_013526  Tter_2041  binding-protein-dependent transport systems inner membrane component  35.07 
 
 
305 aa  140  4.999999999999999e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00457854  n/a   
 
 
-
 
NC_014210  Ndas_0559  binding-protein-dependent transport systems inner membrane component  32.48 
 
 
305 aa  138  1e-31  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_12077  sugar ABC transporter membrane protein  30.8 
 
 
300 aa  139  1e-31  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  34.08 
 
 
317 aa  139  1e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  30.4 
 
 
291 aa  139  1e-31  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_013595  Sros_4987  binding-protein-dependent transport systems inner membrane component  40.27 
 
 
292 aa  137  2e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.753078  normal 
 
 
-
 
NC_012669  Bcav_0179  binding-protein-dependent transport systems inner membrane component  31.42 
 
 
315 aa  138  2e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  31.72 
 
 
309 aa  137  4e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  32.4 
 
 
318 aa  136  5e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_010816  BLD_1304  MalF-type ABC sugar transport systems permease component  28.52 
 
 
334 aa  136  5e-31  Bifidobacterium longum DJO10A  Bacteria  decreased coverage  0.00913134  n/a   
 
 
-
 
NC_013131  Caci_7905  binding-protein-dependent transport systems inner membrane component  36.2 
 
 
336 aa  136  6.0000000000000005e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
305 aa  136  6.0000000000000005e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2273  binding-protein-dependent transport systems inner membrane component  32.26 
 
 
302 aa  136  7.000000000000001e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  34.33 
 
 
283 aa  136  7.000000000000001e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0204  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
299 aa  136  8e-31  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.497209  normal  0.169553 
 
 
-
 
NC_009616  Tmel_1015  binding-protein-dependent transport systems inner membrane component  30.99 
 
 
292 aa  135  9.999999999999999e-31  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0077  binding-protein-dependent transport systems inner membrane component  30.38 
 
 
311 aa  135  9.999999999999999e-31  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
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