More than 300 homologs were found in PanDaTox collection
for query gene Sked_06580 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_06580  carbohydrate ABC transporter membrane protein  100 
 
 
318 aa  634    Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0102  binding-protein-dependent transport systems inner membrane component  54.66 
 
 
310 aa  352  5e-96  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.0186923 
 
 
-
 
NC_013093  Amir_2572  binding-protein-dependent transport systems inner membrane component  61.82 
 
 
278 aa  315  6e-85  Actinosynnema mirum DSM 43827  Bacteria  normal  0.264075  n/a   
 
 
-
 
NC_013131  Caci_4417  binding-protein-dependent transport systems inner membrane component  59.34 
 
 
305 aa  310  2.9999999999999997e-83  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_0929  MalF-type ABC sugar transport systems permease component  52.12 
 
 
308 aa  295  5e-79  Bifidobacterium longum DJO10A  Bacteria  normal  0.574591  n/a   
 
 
-
 
NC_010816  BLD_1007  MalF-type ABC sugar transport systems permease component  50.17 
 
 
320 aa  269  4e-71  Bifidobacterium longum DJO10A  Bacteria  normal  0.324625  n/a   
 
 
-
 
NC_012669  Bcav_1455  binding-protein-dependent transport systems inner membrane component  48.23 
 
 
314 aa  263  4e-69  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.51197  normal 
 
 
-
 
NC_013093  Amir_1928  binding-protein-dependent transport systems inner membrane component  46.67 
 
 
298 aa  216  5e-55  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0911213  n/a   
 
 
-
 
NC_009664  Krad_4189  binding-protein-dependent transport systems inner membrane component  42.63 
 
 
316 aa  201  9.999999999999999e-51  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.255548  normal  0.771693 
 
 
-
 
NC_010816  BLD_1763  MalF-type ABC sugar transport systems permease component  37.61 
 
 
323 aa  201  9.999999999999999e-51  Bifidobacterium longum DJO10A  Bacteria  normal  0.0129756  n/a   
 
 
-
 
NC_013172  Bfae_04080  carbohydrate ABC transporter membrane protein  43.45 
 
 
294 aa  194  1e-48  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0379  binding-protein-dependent transport systems inner membrane component  40.07 
 
 
295 aa  192  7e-48  Jonesia denitrificans DSM 20603  Bacteria  normal  0.767086  normal 
 
 
-
 
NC_012669  Bcav_3303  binding-protein-dependent transport systems inner membrane component  43.75 
 
 
299 aa  191  2e-47  Beutenbergia cavernae DSM 12333  Bacteria  normal  hitchhiker  0.0062931 
 
 
-
 
NC_013947  Snas_0049  binding-protein-dependent transport systems inner membrane component  40.55 
 
 
297 aa  182  5.0000000000000004e-45  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_03910  carbohydrate ABC transporter membrane protein  41.95 
 
 
326 aa  182  7e-45  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.669588 
 
 
-
 
NC_013131  Caci_5098  binding-protein-dependent transport systems inner membrane component  37.07 
 
 
296 aa  179  5.999999999999999e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0579092  normal  0.0820796 
 
 
-
 
NC_013174  Jden_0309  binding-protein-dependent transport systems inner membrane component  40.24 
 
 
304 aa  172  6.999999999999999e-42  Jonesia denitrificans DSM 20603  Bacteria  normal  0.058143  normal  0.103929 
 
 
-
 
NC_013172  Bfae_17030  carbohydrate ABC transporter membrane protein  36.81 
 
 
313 aa  169  4e-41  Brachybacterium faecium DSM 4810  Bacteria  hitchhiker  0.000718721  n/a   
 
 
-
 
NC_013172  Bfae_04010  carbohydrate ABC transporter membrane protein  38.06 
 
 
312 aa  166  5.9999999999999996e-40  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2831  binding-protein-dependent transport systems inner membrane component  43.23 
 
 
287 aa  164  2.0000000000000002e-39  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_1216  binding-protein-dependent transport systems inner membrane component  34.26 
 
 
315 aa  162  7e-39  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.00000228392  n/a   
 
 
-
 
NC_013131  Caci_2030  binding-protein-dependent transport systems inner membrane component  38.55 
 
 
297 aa  159  4e-38  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.185813 
 
 
-
 
NC_012669  Bcav_4058  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
314 aa  157  2e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  34.59 
 
 
298 aa  157  3e-37  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1786  binding-protein-dependent transport systems inner membrane component  32.05 
 
 
335 aa  157  3e-37  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0186858  n/a   
 
 
-
 
NC_009654  Mmwyl1_2714  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
293 aa  155  7e-37  Marinomonas sp. MWYL1  Bacteria  normal  0.548655  normal 
 
 
-
 
NC_013947  Snas_2734  binding-protein-dependent transport systems inner membrane component  34.35 
 
 
308 aa  154  1e-36  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.172129  normal  0.124427 
 
 
-
 
NC_007333  Tfu_0935  multiple sugar transport system permease protein  33.44 
 
 
328 aa  154  2e-36  Thermobifida fusca YX  Bacteria  normal  0.36894  n/a   
 
 
-
 
NC_011899  Hore_04280  binding-protein-dependent transport systems inner membrane component  31.97 
 
 
302 aa  153  2.9999999999999998e-36  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0507  binding-protein-dependent transport systems inner membrane component  36.95 
 
 
299 aa  152  7e-36  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000030377  n/a   
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  30.56 
 
 
315 aa  151  1e-35  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6585  lactose transport system (permease)  35.96 
 
 
306 aa  151  1e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3565  binding-protein-dependent transport systems inner membrane component  31.61 
 
 
316 aa  150  3e-35  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.702273  normal  0.0136241 
 
 
-
 
NC_010003  Pmob_0827  binding-protein-dependent transport systems inner membrane component  36.05 
 
 
299 aa  149  5e-35  Petrotoga mobilis SJ95  Bacteria  normal  0.175132  n/a   
 
 
-
 
NC_009921  Franean1_5460  binding-protein-dependent transport systems inner membrane component  32.13 
 
 
334 aa  146  4.0000000000000006e-34  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_0532  binding-protein-dependent transport systems inner membrane component  35.59 
 
 
311 aa  145  1e-33  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013521  Sked_11610  permease component of ABC-type sugar transporter  32.49 
 
 
311 aa  144  1e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.117578  normal  0.102082 
 
 
-
 
NC_013174  Jden_0512  binding-protein-dependent transport systems inner membrane component  34.08 
 
 
318 aa  145  1e-33  Jonesia denitrificans DSM 20603  Bacteria  hitchhiker  0.000000473727  hitchhiker  0.00124128 
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  34.02 
 
 
300 aa  144  2e-33  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2895  binding-protein-dependent transport systems inner membrane component  33.23 
 
 
316 aa  144  2e-33  Roseiflexus sp. RS-1  Bacteria  normal  0.0497455  normal 
 
 
-
 
NC_012669  Bcav_0555  binding-protein-dependent transport systems inner membrane component  31.75 
 
 
328 aa  142  9.999999999999999e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.913769 
 
 
-
 
NC_013421  Pecwa_0973  binding-protein-dependent transport systems inner membrane component  31.76 
 
 
293 aa  141  1.9999999999999998e-32  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_2400  binding-protein-dependent transport systems inner membrane component  31.71 
 
 
338 aa  140  3e-32  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00254991 
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  31.25 
 
 
321 aa  140  3e-32  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0737  binding-protein-dependent transport systems inner membrane component  32.4 
 
 
293 aa  139  4.999999999999999e-32  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012028  Hlac_2863  binding-protein-dependent transport systems inner membrane component  35.31 
 
 
356 aa  139  4.999999999999999e-32  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_012669  Bcav_2838  binding-protein-dependent transport systems inner membrane component  32.7 
 
 
346 aa  139  7e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.073402  normal 
 
 
-
 
NC_013172  Bfae_19290  carbohydrate ABC transporter membrane protein  33.09 
 
 
328 aa  138  1e-31  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0926617  n/a   
 
 
-
 
NC_011881  Achl_4622  binding-protein-dependent transport systems inner membrane component  32 
 
 
317 aa  138  1e-31  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008048  Sala_1022  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
294 aa  137  2e-31  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  31.01 
 
 
295 aa  137  3.0000000000000003e-31  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_08410  carbohydrate ABC transporter membrane protein  33.95 
 
 
379 aa  137  3.0000000000000003e-31  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.166742 
 
 
-
 
NC_009767  Rcas_1880  binding-protein-dependent transport systems inner membrane component  35.77 
 
 
316 aa  136  4e-31  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.2607 
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  36.27 
 
 
287 aa  135  9e-31  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_0718  binding-protein-dependent transport systems inner membrane component  33.85 
 
 
319 aa  134  9.999999999999999e-31  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.491906  n/a   
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  32.37 
 
 
291 aa  135  9.999999999999999e-31  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_012669  Bcav_0321  binding-protein-dependent transport systems inner membrane component  33.66 
 
 
316 aa  135  9.999999999999999e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2645  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
311 aa  134  1.9999999999999998e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2453  binding-protein-dependent transport systems inner membrane component  31.27 
 
 
314 aa  134  3e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000200699  n/a   
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  29.97 
 
 
309 aa  134  3e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  31.14 
 
 
309 aa  133  3.9999999999999996e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_013595  Sros_3307  sugar transport system (permease)  31.82 
 
 
325 aa  133  3.9999999999999996e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.175437 
 
 
-
 
NC_010001  Cphy_3408  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
293 aa  133  3.9999999999999996e-30  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00259426  n/a   
 
 
-
 
NC_013172  Bfae_29410  carbohydrate ABC transporter membrane protein  31.25 
 
 
322 aa  132  6e-30  Brachybacterium faecium DSM 4810  Bacteria  normal  0.899558  n/a   
 
 
-
 
NC_012669  Bcav_2264  binding-protein-dependent transport systems inner membrane component  30.87 
 
 
307 aa  131  1.0000000000000001e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.277747  normal 
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  32.75 
 
 
288 aa  131  2.0000000000000002e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_013172  Bfae_07470  carbohydrate ABC transporter membrane protein  32.16 
 
 
304 aa  130  2.0000000000000002e-29  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_1443  ABC sugar transporter, inner membrane subunit  28.91 
 
 
303 aa  130  3e-29  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0903613  n/a   
 
 
-
 
NC_013521  Sked_05430  carbohydrate ABC transporter membrane protein  30.79 
 
 
321 aa  130  3e-29  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0550121  normal 
 
 
-
 
NC_009049  Rsph17029_0092  binding-protein-dependent transport systems inner membrane component  28.91 
 
 
296 aa  130  3e-29  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_1775  binding-protein-dependent transport systems inner membrane component  30.91 
 
 
309 aa  130  3e-29  Nakamurella multipartita DSM 44233  Bacteria  normal  0.114297  normal  0.0929805 
 
 
-
 
NC_011371  Rleg2_6525  binding-protein-dependent transport systems inner membrane component  32.71 
 
 
286 aa  130  4.0000000000000003e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.728774  normal  0.302995 
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  30.6 
 
 
311 aa  130  4.0000000000000003e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_009380  Strop_1558  binding-protein-dependent transport systems inner membrane component  33.56 
 
 
322 aa  129  5.0000000000000004e-29  Salinispora tropica CNB-440  Bacteria  normal  0.946878  normal  0.637369 
 
 
-
 
NC_009953  Sare_1507  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
323 aa  129  5.0000000000000004e-29  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000203032 
 
 
-
 
NC_014165  Tbis_3250  binding-protein-dependent transporter inner membrane component  29.93 
 
 
310 aa  129  6e-29  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_012852  Rleg_6113  binding-protein-dependent transport systems inner membrane component  32.34 
 
 
286 aa  129  7.000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.453278  normal 
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  30.66 
 
 
283 aa  129  8.000000000000001e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5709  ABC transporter membrane spanning protein (sugar)  28.9 
 
 
316 aa  128  1.0000000000000001e-28  Agrobacterium vitis S4  Bacteria  normal  0.673224  n/a   
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  30.41 
 
 
316 aa  128  1.0000000000000001e-28  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  31.73 
 
 
299 aa  128  1.0000000000000001e-28  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  28.76 
 
 
305 aa  128  1.0000000000000001e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2875  binding-protein-dependent transport systems inner membrane component  30.39 
 
 
318 aa  129  1.0000000000000001e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal  0.0272583 
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  29.86 
 
 
299 aa  128  1.0000000000000001e-28  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_011898  Ccel_2111  binding-protein-dependent transport systems inner membrane component  29.79 
 
 
306 aa  127  2.0000000000000002e-28  Clostridium cellulolyticum H10  Bacteria  normal  0.157384  n/a   
 
 
-
 
NC_013526  Tter_2496  binding-protein-dependent transport systems inner membrane component  30.48 
 
 
311 aa  127  2.0000000000000002e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1735  binding-protein-dependent transport systems inner membrane component  31.8 
 
 
328 aa  127  3e-28  Thermomonospora curvata DSM 43183  Bacteria  normal  0.152171  n/a   
 
 
-
 
NC_013521  Sked_07100  carbohydrate ABC transporter membrane protein  30.8 
 
 
318 aa  127  3e-28  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.790586  normal 
 
 
-
 
NC_011886  Achl_0400  binding-protein-dependent transport systems inner membrane component  32.64 
 
 
331 aa  126  4.0000000000000003e-28  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013946  Mrub_2532  binding-protein-dependent transport systems inner membrane component  29.97 
 
 
417 aa  126  5e-28  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.636087 
 
 
-
 
NC_012669  Bcav_3898  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
324 aa  126  5e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3002  binding-protein-dependent transport systems inner membrane component  32.64 
 
 
320 aa  126  6e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0311  binding-protein-dependent transport systems inner membrane component  28.17 
 
 
321 aa  125  7e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3328  binding-protein-dependent transport systems inner membrane component  32.14 
 
 
314 aa  125  8.000000000000001e-28  Arthrobacter sp. FB24  Bacteria  normal  0.0166533  n/a   
 
 
-
 
NC_013530  Xcel_0898  binding-protein-dependent transport systems inner membrane component  31.23 
 
 
319 aa  125  8.000000000000001e-28  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.14469  n/a   
 
 
-
 
NC_013172  Bfae_00850  carbohydrate ABC transporter membrane protein  32.38 
 
 
320 aa  125  1e-27  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013745  Htur_4489  binding-protein-dependent transport systems inner membrane component  32.01 
 
 
308 aa  125  1e-27  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.283214  n/a   
 
 
-
 
NC_013530  Xcel_2612  binding-protein-dependent transport systems inner membrane component  30.12 
 
 
365 aa  125  1e-27  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_0205  binding-protein-dependent transport systems inner membrane component  30.58 
 
 
321 aa  125  1e-27  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.0614092  normal 
 
 
-
 
NC_009708  YpsIP31758_1528  carbohydrate ABC transporter permease  29.62 
 
 
291 aa  124  2e-27  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
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