| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0117 |
|---|
| Symbol | |
|---|
| ID | 5171218 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 110957 |
|---|
| End bp | 111859 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640562618 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001243722 |
|---|
| Protein GI | 148269262 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGGAA GGTACTACAA GAGTCTGAGA AAAAAACAGC TTCTTCTTGC ATTCTTCTTC
ATAACGATCC CAACTCTCCT CATGGTGCTT TTCATATATT ATCCTCTCGT GTTCGGTATC
AAAATATCCT TTTACCAGTA CGACATAGTG GGAGAATCTC TTTATATTGG ACTGAAAAAC
TACGTCGATC TGCTTCGCGA TCCTTTATTC TGGAACGCCT TCAAAAACAG TCTTTTGTAC
CTGCTTGTTG TACCTCCGCT CCAGCTCATT TCTATACTGC TTGCGGTCCT GCTCGACAGG
GCCATAAGGG GTAGGAATCT TTTCAGAACT CTCATCTTTC TTCCAGTGGT TACTCCCATC
ACCATCGCTG CGATCACATG GCAGTGGATG TACAGAGAAA AAGGATTCAT CAACTTTCTT
CTCCAATCAC TTCATATTAT AGACGAGCCG ATTGCTTTCC TCTCGGATCC CAAGATAGCT
CTCTTCGCTA TCATGTTTGT CACCATGTGG AAGGGCTTCG GTTACTACAT GGTCATATAT
CTGGCGGGGC TCCAGAGCAT CCCCAGGGAA TTGATAGAAG CTGCCAGGGT TGACGGTGCG
AAACCTTCTC AAGTCTTTTT CAAGGTGACG ATTCCCCTTC TGAAACCGTA CATCTTGTTT
TGCTCAACCA TGTCGTCCAT AGCGGCTTTG AACGTCTTCG GAGAGATTTA CGCTATGACA
AAGGGTGGAC CGGTTCACGC AACGGAAACA ATGGGAATTT TCATATACAA TCGAGCTTTT
GAATATCTCC AGTTCGGGTA CTCGAACGCT GCCGCTGTTC TGTTCAGCTT CGTTGTGATT
GCATTTTCGC TTTTGAACTT CTATCTGTTC AGGGAAGGAG GTTTGAAGAG CTATTATGCC
TAA
|
|---|
| Protein sequence | MPGRYYKSLR KKQLLLAFFF ITIPTLLMVL FIYYPLVFGI KISFYQYDIV GESLYIGLKN
YVDLLRDPLF WNAFKNSLLY LLVVPPLQLI SILLAVLLDR AIRGRNLFRT LIFLPVVTPI
TIAAITWQWM YREKGFINFL LQSLHIIDEP IAFLSDPKIA LFAIMFVTMW KGFGYYMVIY
LAGLQSIPRE LIEAARVDGA KPSQVFFKVT IPLLKPYILF CSTMSSIAAL NVFGEIYAMT
KGGPVHATET MGIFIYNRAF EYLQFGYSNA AAVLFSFVVI AFSLLNFYLF REGGLKSYYA
|
|---|
| |