| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1315 |
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| Symbol | |
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| ID | 8708990 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1571241 |
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| End bp | 1572146 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646483402 |
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| Product | ABC transporter, permease protein |
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| Protein accession | YP_003374503 |
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| Protein GI | 283783749 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAC GTCATTTTCT CAAGTCTGCG CACAGGCACT ACCAGAAAGA TCAGGTAATT
TGTGCTGCGG TATTCTTGTT GCCAGCAGTG CTTATTATTG GTGGTTTCGT GCTGTACCCT
GTGTTGTCTG CTGTATATAT TTCACTAACA TCGTGGGATG GATTCTCTCC AGAAAAGAAA
TTTATTGGCT TGGAAAACTA TGCTCGTCTT TTCCAAGATC CTGAGTTTTT CAACAGCTTA
ATGGTAACAA TTATTTATGC TGCTGGTGTA TGTGTATTAA GTGTGCTGAC TGGATTGTTG
CTCGCGCTTT TGCTTGATGC ACCTATACGA GGTAGGAGTA TTTATCGTAG TATTTACTTC
CTTCCAGTGG TTACATCTTC TGTGGCTGCA GCCATTGTGT GGAAATATAT GCTCGATCCT
TCTGGATTCG TGAACAGTGT GTTGATGAAA TTCAATATAC ACGGACCAGA TTGGTTACAA
AATCGCTGGC TTGCGCTTAT TGCATTAATT CTTTTGACCG TGTGGAAAAA TATTGGTTTT
AACGCTATTT TGTATTTAAC TGCGTTACAA GCATTGCCAA AAAGTGTGTA TGAAGCGGCT
GCATTAGATG GAGCTACTGG GTGGCAAAAA TTATGGAAGA TTACTTTCCC ATTGCTGTCT
CCAATGACGT TTTTTGTAGT AGTTCAGGCA TTGGTGACGA GCTTCCAATC CTTCGACCTT
GCATACATGC TCACGGGTGG TGGGCCTCGC GGAGGCACGG AAGTGCTTGG CATGATGATG
TATCGGGATG CGTTCAAGCT TGGTGATTTT GGCTATGGAA CAGCAATAGC GTTTATTACA
CTTGCGCTAG TGCTAGGCGT GACGATGGTT CAATGGAAAG TTTCTGGAGC ACAAGGAGAA
GAATAA
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| Protein sequence | MKKRHFLKSA HRHYQKDQVI CAAVFLLPAV LIIGGFVLYP VLSAVYISLT SWDGFSPEKK
FIGLENYARL FQDPEFFNSL MVTIIYAAGV CVLSVLTGLL LALLLDAPIR GRSIYRSIYF
LPVVTSSVAA AIVWKYMLDP SGFVNSVLMK FNIHGPDWLQ NRWLALIALI LLTVWKNIGF
NAILYLTALQ ALPKSVYEAA ALDGATGWQK LWKITFPLLS PMTFFVVVQA LVTSFQSFDL
AYMLTGGGPR GGTEVLGMMM YRDAFKLGDF GYGTAIAFIT LALVLGVTMV QWKVSGAQGE
E
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