More than 300 homologs were found in PanDaTox collection
for query gene Pden_1048 on replicon NC_008686
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  100 
 
 
308 aa  608  1e-173  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  39.73 
 
 
312 aa  231  1e-59  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_009485  BBta_1755  ABC transporter permease  40.07 
 
 
312 aa  223  4e-57  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.576454  normal  0.392142 
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  38.52 
 
 
312 aa  214  9.999999999999999e-55  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  37.76 
 
 
313 aa  214  1.9999999999999998e-54  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  38.32 
 
 
313 aa  205  9e-52  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2698  binding-protein-dependent transport systems inner membrane component  39.64 
 
 
295 aa  204  2e-51  Sinorhizobium medicae WSM419  Bacteria  normal  0.0832027  normal 
 
 
-
 
NC_008541  Arth_3686  binding-protein-dependent transport systems inner membrane component  36.21 
 
 
310 aa  198  9e-50  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2171  carbohydrate ABC transporter permease  36.78 
 
 
280 aa  194  1e-48  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0580768  n/a   
 
 
-
 
NC_010159  YpAngola_A2083  carbohydrate ABC transporter permease  37.7 
 
 
286 aa  194  2e-48  Yersinia pestis Angola  Bacteria  normal  normal  0.0183943 
 
 
-
 
NC_007908  Rfer_0953  binding-protein-dependent transport systems inner membrane component  36.77 
 
 
292 aa  194  2e-48  Rhodoferax ferrireducens T118  Bacteria  normal  0.568052  n/a   
 
 
-
 
NC_010465  YPK_2279  binding-protein-dependent transport systems inner membrane component  37.7 
 
 
286 aa  192  4e-48  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  33.33 
 
 
318 aa  191  2e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_013526  Tter_2052  binding-protein-dependent transport systems inner membrane component  39.45 
 
 
291 aa  189  4e-47  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0488  binding-protein-dependent transport systems inner membrane component  37.78 
 
 
302 aa  187  1e-46  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_3776  binding-protein-dependent transport systems inner membrane component  36.16 
 
 
286 aa  188  1e-46  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.771132  normal  0.363599 
 
 
-
 
NC_008010  Dgeo_2820  binding-protein-dependent transport systems inner membrane component  42.24 
 
 
305 aa  187  2e-46  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2623  binding-protein-dependent transport systems inner membrane component  37.16 
 
 
287 aa  187  2e-46  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_1389  binding-protein-dependent transport systems inner membrane component  33.67 
 
 
300 aa  186  6e-46  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal  0.0892858 
 
 
-
 
NC_010003  Pmob_0306  binding-protein-dependent transport systems inner membrane component  36.5 
 
 
294 aa  184  2.0000000000000003e-45  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1261  binding-protein dependent transport system inner membrane protein  36.49 
 
 
298 aa  183  3e-45  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196832  n/a   
 
 
-
 
NC_013521  Sked_03710  carbohydrate ABC transporter membrane protein  37.33 
 
 
332 aa  183  4.0000000000000006e-45  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.899537 
 
 
-
 
NC_010320  Teth514_0396  binding-protein-dependent transport systems inner membrane component  34.87 
 
 
307 aa  181  2e-44  Thermoanaerobacter sp. X514  Bacteria  normal  0.701562  n/a   
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  34.34 
 
 
307 aa  180  2e-44  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  34.34 
 
 
307 aa  180  2e-44  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_008146  Mmcs_2419  binding-protein-dependent transport systems inner membrane component  36.4 
 
 
286 aa  180  2.9999999999999997e-44  Mycobacterium sp. MCS  Bacteria  normal  0.235933  n/a   
 
 
-
 
NC_008705  Mkms_2464  binding-protein-dependent transport systems inner membrane component  36.4 
 
 
286 aa  180  2.9999999999999997e-44  Mycobacterium sp. KMS  Bacteria  normal  0.80505  normal 
 
 
-
 
NC_009077  Mjls_2458  binding-protein-dependent transport systems inner membrane component  36.4 
 
 
286 aa  180  2.9999999999999997e-44  Mycobacterium sp. JLS  Bacteria  normal  0.524108  normal 
 
 
-
 
NC_012850  Rleg_0286  binding-protein-dependent transport systems inner membrane component  34.47 
 
 
291 aa  179  4e-44  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.231338  normal 
 
 
-
 
NC_009664  Krad_4401  binding-protein-dependent transport systems inner membrane component  34.35 
 
 
316 aa  179  4e-44  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_3682  binding-protein-dependent transport systems inner membrane component  38.7 
 
 
283 aa  179  4.999999999999999e-44  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2012  binding-protein-dependent transport systems inner membrane component  34.93 
 
 
310 aa  179  4.999999999999999e-44  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.395958 
 
 
-
 
NC_008786  Veis_0803  binding-protein-dependent transport systems inner membrane component  36.95 
 
 
299 aa  177  2e-43  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.270687  normal 
 
 
-
 
NC_012791  Vapar_3349  binding-protein-dependent transport systems inner membrane component  34.14 
 
 
291 aa  176  3e-43  Variovorax paradoxus S110  Bacteria  normal  0.230089  n/a   
 
 
-
 
NC_012850  Rleg_2284  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
291 aa  177  3e-43  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.257134 
 
 
-
 
NC_013744  Htur_4398  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
314 aa  176  6e-43  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0144983  n/a   
 
 
-
 
NC_011369  Rleg2_0257  binding-protein-dependent transport systems inner membrane component  34.13 
 
 
291 aa  174  9.999999999999999e-43  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.958787  normal 
 
 
-
 
NC_007963  Csal_0259  binding-protein-dependent transport systems inner membrane component  31.63 
 
 
324 aa  174  9.999999999999999e-43  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2427  binding-protein-dependent transport systems inner membrane component  33.44 
 
 
322 aa  174  9.999999999999999e-43  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.535373  normal  0.626108 
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  33.01 
 
 
309 aa  174  1.9999999999999998e-42  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_012848  Rleg_4988  binding-protein-dependent transport systems inner membrane component  34 
 
 
301 aa  174  1.9999999999999998e-42  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0808  binding-protein-dependent transport systems inner membrane component  35.41 
 
 
318 aa  173  2.9999999999999996e-42  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_5637  binding-protein-dependent transport systems inner membrane component  33.67 
 
 
318 aa  171  1e-41  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_1896  binding-protein-dependent transport systems inner membrane component  33.68 
 
 
296 aa  171  1e-41  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.0543799999999999e-20 
 
 
-
 
NC_009654  Mmwyl1_0024  binding-protein-dependent transport systems inner membrane component  35.53 
 
 
320 aa  171  1e-41  Marinomonas sp. MWYL1  Bacteria  normal  0.227719  normal  0.433481 
 
 
-
 
NC_014210  Ndas_3354  binding-protein-dependent transport systems inner membrane component  36.17 
 
 
299 aa  170  2e-41  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_5859  binding-protein-dependent transport systems inner membrane component  32.33 
 
 
301 aa  171  2e-41  Sinorhizobium medicae WSM419  Bacteria  normal  0.173304  normal 
 
 
-
 
NC_014212  Mesil_3057  binding-protein-dependent transport systems inner membrane component  34.75 
 
 
290 aa  170  3e-41  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6370  binding-protein-dependent transport systems inner membrane component  32.43 
 
 
318 aa  169  7e-41  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_0049  binding-protein-dependent transport systems inner membrane component  36.56 
 
 
295 aa  169  8e-41  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0305  sugar ABC transporter, permease protein  33.56 
 
 
325 aa  167  2e-40  Brucella suis 1330  Bacteria  normal  0.0474821  n/a   
 
 
-
 
NC_009668  Oant_2941  binding-protein-dependent transport systems inner membrane component  32.57 
 
 
320 aa  167  2e-40  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.974377  n/a   
 
 
-
 
NC_009504  BOV_A0280  sugar ABC transporter, permease protein  33 
 
 
325 aa  167  2e-40  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_3811  binding-protein-dependent transport systems inner membrane component  34.77 
 
 
328 aa  167  2e-40  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_0670  binding-protein-dependent transport systems inner membrane component  32.85 
 
 
294 aa  167  2.9999999999999998e-40  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_0281  ABC transporter, inner membrane subunit  35.71 
 
 
292 aa  166  2.9999999999999998e-40  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_2900  binding-protein-dependent transport systems inner membrane component  35.48 
 
 
295 aa  166  2.9999999999999998e-40  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009485  BBta_3226  putative sugar ABC transporter, permease protein  35.29 
 
 
310 aa  166  2.9999999999999998e-40  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0290776  normal  0.498538 
 
 
-
 
NC_009486  Tpet_0645  binding-protein-dependent transport systems inner membrane component  31.31 
 
 
309 aa  166  2.9999999999999998e-40  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000282921  n/a   
 
 
-
 
NC_012669  Bcav_2817  binding-protein-dependent transport systems inner membrane component  32.69 
 
 
310 aa  166  5e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.822068  normal 
 
 
-
 
NC_009485  BBta_7824  putative ABC transporter permease protein  33.7 
 
 
295 aa  166  5e-40  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2163  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
307 aa  166  5e-40  Sinorhizobium medicae WSM419  Bacteria  normal  0.0631921  normal 
 
 
-
 
NC_013521  Sked_07100  carbohydrate ABC transporter membrane protein  34.52 
 
 
318 aa  166  5.9999999999999996e-40  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.790586  normal 
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  33.58 
 
 
311 aa  166  5.9999999999999996e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_014210  Ndas_0559  binding-protein-dependent transport systems inner membrane component  34.19 
 
 
305 aa  165  8e-40  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  33.9 
 
 
316 aa  165  1.0000000000000001e-39  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  32.68 
 
 
305 aa  165  1.0000000000000001e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_06500  carbohydrate ABC transporter membrane protein  32.58 
 
 
321 aa  164  2.0000000000000002e-39  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3982  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
316 aa  164  2.0000000000000002e-39  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_1200  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
310 aa  164  2.0000000000000002e-39  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4645  binding-protein-dependent transport systems inner membrane component  35.25 
 
 
299 aa  163  4.0000000000000004e-39  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00190071 
 
 
-
 
NC_011368  Rleg2_5492  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
328 aa  162  4.0000000000000004e-39  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.511246  normal  0.17987 
 
 
-
 
NC_012912  Dd1591_1969  binding-protein-dependent transport systems inner membrane component  32.67 
 
 
296 aa  162  5.0000000000000005e-39  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2459  binding-protein-dependent transport systems inner membrane component  38.83 
 
 
331 aa  162  5.0000000000000005e-39  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.216304  n/a   
 
 
-
 
NC_010627  Bphy_7450  binding-protein-dependent transport systems inner membrane component  33.55 
 
 
316 aa  162  7e-39  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_2034  binding-protein-dependent transport systems inner membrane component  32 
 
 
296 aa  162  8.000000000000001e-39  Dickeya dadantii Ech703  Bacteria  normal  0.963086  n/a   
 
 
-
 
NC_009939  Dgeo_2918  ABC-type sugar transport system, permease component  31.62 
 
 
305 aa  162  8.000000000000001e-39  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_010552  BamMC406_4681  binding-protein-dependent transport systems inner membrane component  38.15 
 
 
289 aa  162  9e-39  Burkholderia ambifaria MC40-6  Bacteria  normal  0.205446  normal 
 
 
-
 
NC_008148  Rxyl_1990  binding-protein-dependent transport systems inner membrane component  30.74 
 
 
306 aa  162  9e-39  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.306567  n/a   
 
 
-
 
NC_010001  Cphy_0620  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
305 aa  161  1e-38  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000205165  n/a   
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  33.82 
 
 
295 aa  160  2e-38  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  35.68 
 
 
427 aa  159  4e-38  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_014212  Mesil_1016  binding-protein-dependent transport systems inner membrane component  36.15 
 
 
301 aa  159  4e-38  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_3982  binding-protein-dependent transport systems inner membrane component  34.53 
 
 
308 aa  159  4e-38  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4056  binding-protein-dependent transport systems inner membrane component  34.53 
 
 
308 aa  159  4e-38  Mycobacterium sp. KMS  Bacteria  normal  0.853442  normal  0.685254 
 
 
-
 
NC_009077  Mjls_2595  binding-protein-dependent transport systems inner membrane component  34.75 
 
 
318 aa  159  4e-38  Mycobacterium sp. JLS  Bacteria  normal  0.177004  normal  0.445691 
 
 
-
 
NC_007005  Psyr_0761  binding-protein dependent transport system inner membrane protein  34.72 
 
 
320 aa  159  5e-38  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0629996  normal  0.824676 
 
 
-
 
NC_008146  Mmcs_2556  binding-protein-dependent transport systems inner membrane component  34.43 
 
 
318 aa  159  5e-38  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_2601  binding-protein-dependent transport systems inner membrane component  34.43 
 
 
318 aa  159  5e-38  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3996  binding-protein-dependent transport systems inner membrane component  34.53 
 
 
308 aa  159  5e-38  Mycobacterium sp. JLS  Bacteria  normal  0.172958  normal  0.378531 
 
 
-
 
NC_007511  Bcep18194_B0940  ABC sugar transporter, inner membrane subunit  38.28 
 
 
289 aa  159  6e-38  Burkholderia sp. 383  Bacteria  normal  normal  0.298922 
 
 
-
 
NC_008699  Noca_0870  binding-protein-dependent transport systems inner membrane component  34.98 
 
 
309 aa  158  9e-38  Nocardioides sp. JS614  Bacteria  normal  0.800905  n/a   
 
 
-
 
NC_008061  Bcen_3593  binding-protein-dependent transport systems inner membrane component  38.28 
 
 
289 aa  158  1e-37  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4774  binding-protein-dependent transport systems inner membrane component  38.28 
 
 
289 aa  158  1e-37  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.808754 
 
 
-
 
NC_008687  Pden_4441  binding-protein-dependent transport systems inner membrane component  32.79 
 
 
320 aa  158  1e-37  Paracoccus denitrificans PD1222  Bacteria  normal  0.0272526  normal 
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  34.18 
 
 
283 aa  158  1e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5509  binding-protein-dependent transport systems inner membrane component  38.28 
 
 
289 aa  158  1e-37  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.438366  normal 
 
 
-
 
NC_013521  Sked_05430  carbohydrate ABC transporter membrane protein  30.74 
 
 
321 aa  158  1e-37  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0550121  normal 
 
 
-
 
NC_012669  Bcav_0801  binding-protein-dependent transport systems inner membrane component  35.13 
 
 
319 aa  157  1e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.836257  decreased coverage  0.00115511 
 
 
-
 
NC_013530  Xcel_2535  binding-protein-dependent transport systems inner membrane component  32.86 
 
 
314 aa  157  2e-37  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
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