More than 300 homologs were found in PanDaTox collection
for query gene Smed_2163 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009636  Smed_2163  binding-protein-dependent transport systems inner membrane component  100 
 
 
307 aa  609  1e-173  Sinorhizobium medicae WSM419  Bacteria  normal  0.0631921  normal 
 
 
-
 
NC_009485  BBta_3226  putative sugar ABC transporter, permease protein  77.78 
 
 
310 aa  429  1e-119  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0290776  normal  0.498538 
 
 
-
 
NC_008786  Veis_2012  binding-protein-dependent transport systems inner membrane component  69.93 
 
 
310 aa  418  1e-116  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.395958 
 
 
-
 
NC_009484  Acry_2567  binding-protein-dependent transport systems inner membrane component  62.71 
 
 
308 aa  369  1e-101  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2489  binding-protein-dependent transport systems inner membrane component  54.58 
 
 
317 aa  261  1e-68  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.42447  n/a   
 
 
-
 
NC_009664  Krad_2091  binding-protein-dependent transport systems inner membrane component  41.72 
 
 
292 aa  228  1e-58  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_03300  binding-protein-dependent transport systems inner membrane component  46.76 
 
 
308 aa  225  7e-58  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4077  binding-protein-dependent transport systems inner membrane component  39.79 
 
 
317 aa  224  1e-57  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.140823  normal  0.731226 
 
 
-
 
NC_008146  Mmcs_2556  binding-protein-dependent transport systems inner membrane component  41.18 
 
 
318 aa  214  9.999999999999999e-55  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_2601  binding-protein-dependent transport systems inner membrane component  41.18 
 
 
318 aa  214  9.999999999999999e-55  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_2595  binding-protein-dependent transport systems inner membrane component  41.18 
 
 
318 aa  214  1.9999999999999998e-54  Mycobacterium sp. JLS  Bacteria  normal  0.177004  normal  0.445691 
 
 
-
 
NC_010627  Bphy_7450  binding-protein-dependent transport systems inner membrane component  41.09 
 
 
316 aa  211  1e-53  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  34.29 
 
 
308 aa  174  9.999999999999999e-43  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_0396  binding-protein-dependent transport systems inner membrane component  35.69 
 
 
307 aa  169  7e-41  Thermoanaerobacter sp. X514  Bacteria  normal  0.701562  n/a   
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  32.44 
 
 
312 aa  168  1e-40  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  31.83 
 
 
312 aa  167  2.9999999999999998e-40  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  32.13 
 
 
313 aa  167  2.9999999999999998e-40  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_009485  BBta_1755  ABC transporter permease  33.68 
 
 
312 aa  165  8e-40  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.576454  normal  0.392142 
 
 
-
 
NC_009621  Smed_5859  binding-protein-dependent transport systems inner membrane component  35.39 
 
 
301 aa  165  9e-40  Sinorhizobium medicae WSM419  Bacteria  normal  0.173304  normal 
 
 
-
 
NC_008786  Veis_0803  binding-protein-dependent transport systems inner membrane component  37.26 
 
 
299 aa  164  2.0000000000000002e-39  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.270687  normal 
 
 
-
 
NC_012848  Rleg_4988  binding-protein-dependent transport systems inner membrane component  36.09 
 
 
301 aa  163  3e-39  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2427  binding-protein-dependent transport systems inner membrane component  30.39 
 
 
322 aa  160  2e-38  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.535373  normal  0.626108 
 
 
-
 
NC_009708  YpsIP31758_2171  carbohydrate ABC transporter permease  35.63 
 
 
280 aa  160  3e-38  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0580768  n/a   
 
 
-
 
NC_010676  Bphyt_5637  binding-protein-dependent transport systems inner membrane component  31.07 
 
 
318 aa  160  3e-38  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A2083  carbohydrate ABC transporter permease  35.71 
 
 
286 aa  159  4e-38  Yersinia pestis Angola  Bacteria  normal  normal  0.0183943 
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  38.1 
 
 
427 aa  159  4e-38  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_010625  Bphy_6370  binding-protein-dependent transport systems inner membrane component  32.32 
 
 
318 aa  157  1e-37  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  30.72 
 
 
318 aa  158  1e-37  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_010465  YPK_2279  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
286 aa  158  1e-37  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0645  binding-protein-dependent transport systems inner membrane component  31.62 
 
 
309 aa  157  2e-37  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000282921  n/a   
 
 
-
 
NC_009636  Smed_2698  binding-protein-dependent transport systems inner membrane component  35.15 
 
 
295 aa  157  3e-37  Sinorhizobium medicae WSM419  Bacteria  normal  0.0832027  normal 
 
 
-
 
NC_013744  Htur_4398  binding-protein-dependent transport systems inner membrane component  31.62 
 
 
314 aa  155  7e-37  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0144983  n/a   
 
 
-
 
NC_008010  Dgeo_2820  binding-protein-dependent transport systems inner membrane component  36.98 
 
 
305 aa  155  1e-36  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2623  binding-protein-dependent transport systems inner membrane component  36.69 
 
 
287 aa  153  4e-36  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3776  binding-protein-dependent transport systems inner membrane component  34.59 
 
 
286 aa  153  4e-36  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.771132  normal  0.363599 
 
 
-
 
NC_010483  TRQ2_0670  binding-protein-dependent transport systems inner membrane component  31.71 
 
 
294 aa  152  8e-36  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0306  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
294 aa  150  2e-35  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  33.59 
 
 
313 aa  150  2e-35  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1501  binding-protein-dependent transport systems inner membrane component  35.23 
 
 
304 aa  150  3e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.707606 
 
 
-
 
NC_009616  Tmel_1819  binding-protein-dependent transport systems inner membrane component  32.75 
 
 
293 aa  146  4.0000000000000006e-34  Thermosipho melanesiensis BI429  Bacteria  normal  0.215175  n/a   
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  35.47 
 
 
435 aa  146  4.0000000000000006e-34  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007908  Rfer_0953  binding-protein-dependent transport systems inner membrane component  33.72 
 
 
292 aa  144  1e-33  Rhodoferax ferrireducens T118  Bacteria  normal  0.568052  n/a   
 
 
-
 
NC_007948  Bpro_0700  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
336 aa  143  3e-33  Polaromonas sp. JS666  Bacteria  normal  0.788363  normal 
 
 
-
 
NC_007963  Csal_2611  binding-protein-dependent transport systems inner membrane component  32.85 
 
 
280 aa  143  3e-33  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_02940  carbohydrate ABC transporter membrane protein  31.44 
 
 
318 aa  143  3e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_2941  binding-protein-dependent transport systems inner membrane component  31.23 
 
 
320 aa  142  5e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.974377  n/a   
 
 
-
 
NC_007963  Csal_0259  binding-protein-dependent transport systems inner membrane component  31.86 
 
 
324 aa  141  1.9999999999999998e-32  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_00790  binding-protein-dependent transport systems inner membrane component  32.05 
 
 
262 aa  140  1.9999999999999998e-32  Halothermothrix orenii H 168  Bacteria  normal  0.772214  n/a   
 
 
-
 
NC_012791  Vapar_3349  binding-protein-dependent transport systems inner membrane component  30.2 
 
 
291 aa  141  1.9999999999999998e-32  Variovorax paradoxus S110  Bacteria  normal  0.230089  n/a   
 
 
-
 
NC_013757  Gobs_3933  binding-protein-dependent transport systems inner membrane component  34.21 
 
 
320 aa  140  3e-32  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.292649  n/a   
 
 
-
 
NC_008010  Dgeo_2869  binding-protein-dependent transport systems inner membrane component  35.99 
 
 
308 aa  140  3e-32  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4645  binding-protein-dependent transport systems inner membrane component  31.54 
 
 
299 aa  139  6e-32  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00190071 
 
 
-
 
NC_013205  Aaci_2236  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
315 aa  139  8.999999999999999e-32  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0971  binding-protein-dependent transport systems inner membrane component  32.26 
 
 
293 aa  138  1e-31  Thermotoga sp. RQ2  Bacteria  normal  0.0994152  n/a   
 
 
-
 
NC_012850  Rleg_2284  binding-protein-dependent transport systems inner membrane component  33.86 
 
 
291 aa  138  1e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.257134 
 
 
-
 
NC_014158  Tpau_1637  binding-protein-dependent transport systems inner membrane component  30.83 
 
 
303 aa  138  1e-31  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0695484  n/a   
 
 
-
 
NC_013595  Sros_3494  binding-protein-dependent transport systems inner membrane component  32.56 
 
 
311 aa  138  1e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.716912  normal  0.704951 
 
 
-
 
NC_009486  Tpet_0955  binding-protein-dependent transport systems inner membrane component  32.26 
 
 
293 aa  138  1e-31  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0028  binding-protein-dependent transport systems inner membrane component  32.88 
 
 
300 aa  138  1e-31  Petrotoga mobilis SJ95  Bacteria  unclonable  0.0000000378352  n/a   
 
 
-
 
NC_009654  Mmwyl1_0024  binding-protein-dependent transport systems inner membrane component  31.77 
 
 
320 aa  137  2e-31  Marinomonas sp. MWYL1  Bacteria  normal  0.227719  normal  0.433481 
 
 
-
 
NC_008146  Mmcs_2419  binding-protein-dependent transport systems inner membrane component  30.25 
 
 
286 aa  137  2e-31  Mycobacterium sp. MCS  Bacteria  normal  0.235933  n/a   
 
 
-
 
NC_012850  Rleg_0286  binding-protein-dependent transport systems inner membrane component  32.68 
 
 
291 aa  137  2e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.231338  normal 
 
 
-
 
NC_008705  Mkms_2464  binding-protein-dependent transport systems inner membrane component  30.25 
 
 
286 aa  137  2e-31  Mycobacterium sp. KMS  Bacteria  normal  0.80505  normal 
 
 
-
 
NC_009077  Mjls_2458  binding-protein-dependent transport systems inner membrane component  30.25 
 
 
286 aa  137  2e-31  Mycobacterium sp. JLS  Bacteria  normal  0.524108  normal 
 
 
-
 
NC_009485  BBta_7824  putative ABC transporter permease protein  36.67 
 
 
295 aa  137  2e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_3811  binding-protein-dependent transport systems inner membrane component  34.67 
 
 
328 aa  137  3.0000000000000003e-31  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_4750  binding-protein-dependent transport systems inner membrane component  32.41 
 
 
299 aa  136  4e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.62916  normal  0.701692 
 
 
-
 
NC_008541  Arth_3686  binding-protein-dependent transport systems inner membrane component  28.81 
 
 
310 aa  135  9.999999999999999e-31  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3682  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
283 aa  135  9.999999999999999e-31  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0257  binding-protein-dependent transport systems inner membrane component  32.68 
 
 
291 aa  135  9.999999999999999e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.958787  normal 
 
 
-
 
NC_008687  Pden_4441  binding-protein-dependent transport systems inner membrane component  32.67 
 
 
320 aa  134  1.9999999999999998e-30  Paracoccus denitrificans PD1222  Bacteria  normal  0.0272526  normal 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  31.33 
 
 
307 aa  133  3e-30  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  31.33 
 
 
307 aa  133  3e-30  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_011661  Dtur_0488  binding-protein-dependent transport systems inner membrane component  36.51 
 
 
302 aa  133  3.9999999999999996e-30  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1844  binding-protein-dependent transport systems inner membrane component  31.67 
 
 
291 aa  133  3.9999999999999996e-30  Actinosynnema mirum DSM 43827  Bacteria  normal  0.476032  n/a   
 
 
-
 
NC_009664  Krad_1114  binding-protein-dependent transport systems inner membrane component  31.68 
 
 
319 aa  133  3.9999999999999996e-30  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.32149  normal  0.356013 
 
 
-
 
NC_009636  Smed_2314  binding-protein-dependent transport systems inner membrane component  32.86 
 
 
310 aa  132  6.999999999999999e-30  Sinorhizobium medicae WSM419  Bacteria  normal  0.498676  normal  0.350334 
 
 
-
 
NC_011729  PCC7424_1896  binding-protein-dependent transport systems inner membrane component  30.37 
 
 
296 aa  132  9e-30  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.0543799999999999e-20 
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  34.68 
 
 
287 aa  131  1.0000000000000001e-29  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0571  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
296 aa  131  1.0000000000000001e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_0382  binding-protein-dependent transport systems inner membrane component  31.76 
 
 
296 aa  131  1.0000000000000001e-29  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1990  binding-protein-dependent transport systems inner membrane component  31.96 
 
 
306 aa  132  1.0000000000000001e-29  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.306567  n/a   
 
 
-
 
NC_004311  BRA0305  sugar ABC transporter, permease protein  34.74 
 
 
325 aa  130  2.0000000000000002e-29  Brucella suis 1330  Bacteria  normal  0.0474821  n/a   
 
 
-
 
NC_011371  Rleg2_6391  binding-protein-dependent transport systems inner membrane component  31.23 
 
 
372 aa  130  2.0000000000000002e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.452199  normal 
 
 
-
 
NC_007488  RSP_7366  ABC sugar transporter, inner membrane subunit  36.57 
 
 
278 aa  130  2.0000000000000002e-29  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0828384  n/a   
 
 
-
 
NC_007643  Rru_A1261  binding-protein dependent transport system inner membrane protein  31.68 
 
 
298 aa  130  2.0000000000000002e-29  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196832  n/a   
 
 
-
 
NC_007958  RPD_3149  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
315 aa  130  2.0000000000000002e-29  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0566553  normal  0.330059 
 
 
-
 
NC_009718  Fnod_0449  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
295 aa  131  2.0000000000000002e-29  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.982578  n/a   
 
 
-
 
NC_009504  BOV_A0280  sugar ABC transporter, permease protein  34.74 
 
 
325 aa  131  2.0000000000000002e-29  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0176  binding-protein dependent transport system inner membrane protein  31.4 
 
 
314 aa  130  3e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_1389  binding-protein-dependent transport systems inner membrane component  30.66 
 
 
300 aa  130  3e-29  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal  0.0892858 
 
 
-
 
NC_011661  Dtur_1742  binding-protein-dependent transport systems inner membrane component  34.7 
 
 
292 aa  130  3e-29  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_2900  binding-protein-dependent transport systems inner membrane component  33.58 
 
 
295 aa  130  3e-29  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_014212  Mesil_3057  binding-protein-dependent transport systems inner membrane component  31.9 
 
 
290 aa  130  4.0000000000000003e-29  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0398  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
312 aa  130  4.0000000000000003e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011368  Rleg2_5492  binding-protein-dependent transport systems inner membrane component  31.77 
 
 
328 aa  129  6e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.511246  normal  0.17987 
 
 
-
 
NC_008541  Arth_0049  binding-protein-dependent transport systems inner membrane component  32.45 
 
 
295 aa  129  6e-29  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_4634  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
292 aa  129  6e-29  Nocardioides sp. JS614  Bacteria  normal  0.219562  n/a   
 
 
-
 
NC_012669  Bcav_0146  binding-protein-dependent transport systems inner membrane component  32.45 
 
 
292 aa  129  7.000000000000001e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0896196  normal 
 
 
-
 
NC_007802  Jann_2117  binding-protein-dependent transport systems inner membrane component  30.13 
 
 
365 aa  129  8.000000000000001e-29  Jannaschia sp. CCS1  Bacteria  normal  0.482665  normal  0.47011 
 
 
-
 
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