| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2117 |
|---|
| Symbol | |
|---|
| ID | 3934570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 2125398 |
|---|
| End bp | 2126495 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637904473 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_510059 |
|---|
| Protein GI | 89054608 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.482665 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.47011 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGG ATCGCCTCTA CGTCGTCACA AACGACCAGA TCACACCGGG GCGCGTCCGG
GTCGGGACCG TGATGATCTG GGCCTCTTTC GCACTTCTGG TGGTCATCGC CACCTGGCAG
GTCCTGGGTG GCTACGACCT GACCTACGAC TTCTCCAACT GGCGCCCGAC CCTCTATGCG
TACCTGTTTT TCGTCACCTG CTATTGCATG GCTCTGGTCG TGCGCCATGG CGAGCAGGGC
AAGCGGCGTC TCTTCATCGT GCCGGCGACC ATTTTCGTTC TGTCCATGGT GTTCATCCCG
CTGGTCTTCG GCCTCAGCAT CGCGTTTTCG GACTGGAACC TCAGCTCCGT CAGCGGCCAG
CAATACAACG GTTTCGACAA TATCAGGCAG ATGTGGCAGG ACGATTTCTA CTGGAACGCG
CTGACCAATA TGCTCTGGTA TACGCTGGCG ATCATCGTCG AATACGTCAT CGCCTTTGGC
CTGGCATTGC TGCTCAACAG TCAGATCCGG GCGCGCAAGT TCTTCCGCGT CGCTTTCCTG
CTGCCCCTGA TGCTGTCGCC GGTCGCCGTG TCGTGGATGG TCGGCAAGTC CATGTTGGAG
GCCCGCTTCG GCCCCATCGC CCGGCTCGCG CGGACGCTTG GCATCGACAA TCCCAGCTTC
TTTGGCGACG CGGAAACCGC CCGCGCGATG ATCATGATCA TGGATGCCTG GACCTTCATC
CCCTTCATGA TGATCATGCT TCTGGCGGGC CTTCAGTCGA TCCCGAAAGA CATCCAGGAG
GCCGCCCGCG TCGATGGCGC GACGCCGTGG CAGAATTTCA GGGAGGTCAC GTTTCCCCTG
ATGCTGCCGG TGTCGATCAC GGCGATCATG ATCCGCATCA TCTTCAAACT GAAGCTGGCC
GACATTATCA TCAACGTGAC GTCCGGCGGG CCCGGCGGGG CGACGGACTC GGTCACGTCG
TTCATCTTTC GCGAATACCG CGACCGCTCC AACGTGGGCT ACGGCACGAT GCTCGCCATG
GTCTATCTGG TGTTCATCGT CATCGGCTTC ACCCTGTTCC TGAAACTCGC GGCCCGCTGG
ATGCGGCCGA AATACTGA
|
|---|
| Protein sequence | MSQDRLYVVT NDQITPGRVR VGTVMIWASF ALLVVIATWQ VLGGYDLTYD FSNWRPTLYA
YLFFVTCYCM ALVVRHGEQG KRRLFIVPAT IFVLSMVFIP LVFGLSIAFS DWNLSSVSGQ
QYNGFDNIRQ MWQDDFYWNA LTNMLWYTLA IIVEYVIAFG LALLLNSQIR ARKFFRVAFL
LPLMLSPVAV SWMVGKSMLE ARFGPIARLA RTLGIDNPSF FGDAETARAM IMIMDAWTFI
PFMMIMLLAG LQSIPKDIQE AARVDGATPW QNFREVTFPL MLPVSITAIM IRIIFKLKLA
DIIINVTSGG PGGATDSVTS FIFREYRDRS NVGYGTMLAM VYLVFIVIGF TLFLKLAARW
MRPKY
|
|---|
| |