Gene Smed_2163 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2163 
Symbol 
ID5323023 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp2232873 
End bp2233796 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content61% 
IMG OID640791101 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001327831 
Protein GI150397364 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1175] ABC-type sugar transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0631921 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTTCAG TAACGCACTC CAGCGCAAGG CGCAGCAGGT TCAGGATCAG CAAAAGGGTT 
TTACCCTATG TGCTCTCCCT GCCGGCGCTT CTCGTGTGTA TCGGCATCCT GATCCCGTTC
TTCACGGCGG TGATCTATTC CTTCCAGCGC TACAGGCTGA GCCAGCCCTG GGCACGTCAG
TTCAACTGGG GTGACAACTA CCTGAATTTC TTCACGGATC CGGGCTTCTG GAACACGCTG
AAGATCTCGC TGCTCTATGC CGGCGTCACG GTGACCCTGG AGCTGCTGCT CGGTCTCGGC
ATTGCGCTGC TCCTGCAGCG CCGCTCCACG GTCAACAACT TCATCTCGAT CATGCTGCTC
CTGCCGCTGA TGACGGCGCC GGCGCTCGCG GCGCTGATGT GGAAGCTGAT GACCAATCCC
GGCTTCGGCA TCCTGAGCTA CCTCGCAAGT CTCATCGGGC TGGAGAATTT CCGCTGGGCT
TCGTCGCCGG ATACGGCGCT CCTGACGGTC GTGCTCGTCG ATATCTGGGT CTATACGCCC
TTTATTATGA TCCTGCTCCT GGCAGGCCTA CGCTCGCTGC CGACGCAGCC TTTCGAGGCG
GCGGCGCTCG ATGGCGTGCC GCGCAGCTTC GTCTTCTTCC GCATCACCCT GCCCATGCTG
ACGCCCTATA TCCTGACGGC GACGCTGTTC CGCCTGCTCG ATTCGATCCA GCAGTTCGAC
ATCATCTACG CGATGACGCA AGGAGGGCCG GGCGACACCC TTACCGTCTT CCAGGTCGAG
GCTTACCTCA ACTTCTTCCA GTCGACCAAT GTGGGCCGGT CCGCGGCGCT GCTGATCATC
CTCTGGGCGA TCACCTACAT ATTGTCGAAC ATCTTCATCA AGAACTGGCT CCGGCTGCGC
GAACGCGCCC GCGGCGAAGC GTAA
 
Protein sequence
MASVTHSSAR RSRFRISKRV LPYVLSLPAL LVCIGILIPF FTAVIYSFQR YRLSQPWARQ 
FNWGDNYLNF FTDPGFWNTL KISLLYAGVT VTLELLLGLG IALLLQRRST VNNFISIMLL
LPLMTAPALA ALMWKLMTNP GFGILSYLAS LIGLENFRWA SSPDTALLTV VLVDIWVYTP
FIMILLLAGL RSLPTQPFEA AALDGVPRSF VFFRITLPML TPYILTATLF RLLDSIQQFD
IIYAMTQGGP GDTLTVFQVE AYLNFFQSTN VGRSAALLII LWAITYILSN IFIKNWLRLR
ERARGEA