Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rxyl_1990 |
Symbol | |
ID | 4117578 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rubrobacter xylanophilus DSM 9941 |
Kingdom | Bacteria |
Replicon accession | NC_008148 |
Strand | - |
Start bp | 2009817 |
End bp | 2010737 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 638036777 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_644749 |
Protein GI | 108804812 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1175] ABC-type sugar transport systems, permease components |
TIGRFAM ID | [TIGR02762] type IV conjugative transfer system protein TraL |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.306567 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACCACCC AGACCCAGAG CAAGAGAAAG CGGCGGGGAG GCATCCTGCG GGAGGAGTTC TCCAACCCCG AGCGGCGGCT CGCCTACTAC ATGGTGCTGC CGACGCTCCT CATCATCCTG GTCGTCGCCT TCTTCCCGGT CGTCTCCTCG ATATGGCTGA GCCTGCACCA GGCCACGGTG ACCAACACCG GGGCCTTCGT GGGGCTCGAG AACTACATCG AGATGTTCCA GAACGACGAC TTCATCGAGG GGCTCACCAA CACCGTGATC TTCACGGTGG TCAGCGTGGG GCTGGAGTTC ATCATCGGGC TCGGCATAGC GCTGGCCATA AACCGGGCCT TCCGGGGGCG CGGGCTGGTG CGGGCCGCGG TGCTGGTCCC CTGGGCGTTC CCCACGGTGA TCTCTGCGGT CATGTGGCGG CTGATGTTCC AGGACCAGGT CGGGATCATC AACTACGTCG CAAACGCCCT CGGGATCATC AGCCAGCCCA TTCTCTCCGA CAGGACGCTG CTGCTGATCG CGGCGATCCT GGTGGACGTG TGGAAGACCA CGCCGTTCAT GGCGCTCCTC CTGCTCGCCG GGCTGCAGGT CATCCCCGGC GACGTCTACG AGGCGGCCAA GGTGGACGGG GCGAACGTGC TGCAGCGGTT CTTCAGCATC ACGCTGCCGC TGCTGAAGCC CGCCATCCTG GTGGCGGTAC TCTTCCGGAC GCTCGACGCC TACCGGGTCT ACGACCTGTT CTGGGCGATG AGCAACCGGG AGCTGGAGTC CCTCTCCACC TTCGTGTACA AGGCGGTGAG GGTGAGCCAG CTGCTCTTCG CGCAGGGCAA CGCGGCGGCG GTGTTCGTGT TCGTCACGTC CTTCCTGATC GCGCTGCTGT TCATAAAGGG CTTCGGCATG CAGACTTCCA CGGGGGACTA G
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Protein sequence | MTTQTQSKRK RRGGILREEF SNPERRLAYY MVLPTLLIIL VVAFFPVVSS IWLSLHQATV TNTGAFVGLE NYIEMFQNDD FIEGLTNTVI FTVVSVGLEF IIGLGIALAI NRAFRGRGLV RAAVLVPWAF PTVISAVMWR LMFQDQVGII NYVANALGII SQPILSDRTL LLIAAILVDV WKTTPFMALL LLAGLQVIPG DVYEAAKVDG ANVLQRFFSI TLPLLKPAIL VAVLFRTLDA YRVYDLFWAM SNRELESLST FVYKAVRVSQ LLFAQGNAAA VFVFVTSFLI ALLFIKGFGM QTSTGD
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