More than 300 homologs were found in PanDaTox collection
for query gene Cphy_0620 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_0620  binding-protein-dependent transport systems inner membrane component  100 
 
 
305 aa  615  1e-175  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000205165  n/a   
 
 
-
 
NC_012034  Athe_2375  binding-protein-dependent transport systems inner membrane component  53.29 
 
 
298 aa  330  2e-89  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_0698  binding-protein-dependent transport systems inner membrane component  51.4 
 
 
293 aa  325  8.000000000000001e-88  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0774  binding-protein-dependent transport systems inner membrane component  51.77 
 
 
293 aa  309  4e-83  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2200  binding-protein-dependent transport systems inner membrane component  50 
 
 
296 aa  309  4e-83  Pectobacterium wasabiae WPP163  Bacteria  normal  0.467118  n/a   
 
 
-
 
NC_012917  PC1_1907  binding-protein-dependent transport systems inner membrane component  49.65 
 
 
296 aa  308  1.0000000000000001e-82  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0961638  n/a   
 
 
-
 
NC_012880  Dd703_2034  binding-protein-dependent transport systems inner membrane component  48.58 
 
 
296 aa  306  4.0000000000000004e-82  Dickeya dadantii Ech703  Bacteria  normal  0.963086  n/a   
 
 
-
 
NC_012912  Dd1591_1969  binding-protein-dependent transport systems inner membrane component  48.58 
 
 
296 aa  305  7e-82  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_4049  binding-protein-dependent transport systems inner membrane component  49.31 
 
 
292 aa  300  2e-80  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3289  binding-protein-dependent transport systems inner membrane component  47.04 
 
 
296 aa  294  1e-78  Enterobacter sp. 638  Bacteria  normal  normal  0.243021 
 
 
-
 
NC_009708  YpsIP31758_1691  oligogalacturonide ABC tansporter, permease protein  47.52 
 
 
296 aa  293  3e-78  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.041328  n/a   
 
 
-
 
NC_010465  YPK_1801  binding-protein-dependent transport systems inner membrane component  47.52 
 
 
296 aa  293  3e-78  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.780468  n/a   
 
 
-
 
NC_011661  Dtur_0438  binding-protein-dependent transport systems inner membrane component  48.63 
 
 
302 aa  292  4e-78  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000597022  n/a   
 
 
-
 
NC_010159  YpAngola_A2645  oligogalacturonide ABC tansporter, permease  47.16 
 
 
296 aa  290  2e-77  Yersinia pestis Angola  Bacteria  normal  0.952468  normal  0.0439933 
 
 
-
 
NC_010001  Cphy_3401  binding-protein-dependent transport systems inner membrane component  51.25 
 
 
305 aa  286  2e-76  Clostridium phytofermentans ISDg  Bacteria  normal  0.028536  n/a   
 
 
-
 
NC_009636  Smed_3328  binding-protein-dependent transport systems inner membrane component  45.67 
 
 
318 aa  282  5.000000000000001e-75  Sinorhizobium medicae WSM419  Bacteria  normal  0.670475  normal  0.953703 
 
 
-
 
NC_011369  Rleg2_4016  binding-protein-dependent transport systems inner membrane component  43.71 
 
 
319 aa  282  6.000000000000001e-75  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_4345  binding-protein-dependent transport systems inner membrane component  43.38 
 
 
319 aa  280  2e-74  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.0000915897 
 
 
-
 
NC_011886  Achl_3130  binding-protein-dependent transport systems inner membrane component  45 
 
 
314 aa  279  5e-74  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.00699527 
 
 
-
 
NC_008541  Arth_3328  binding-protein-dependent transport systems inner membrane component  44 
 
 
314 aa  272  4.0000000000000004e-72  Arthrobacter sp. FB24  Bacteria  normal  0.0166533  n/a   
 
 
-
 
NC_012034  Athe_2080  binding-protein-dependent transport systems inner membrane component  46.03 
 
 
308 aa  272  6e-72  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.136718  n/a   
 
 
-
 
NC_013521  Sked_05430  carbohydrate ABC transporter membrane protein  44.07 
 
 
321 aa  269  5e-71  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0550121  normal 
 
 
-
 
NC_013530  Xcel_0898  binding-protein-dependent transport systems inner membrane component  42.28 
 
 
319 aa  268  1e-70  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.14469  n/a   
 
 
-
 
NC_011988  Avi_5581  ABC transporter membrane spanning protein (galacturonic acid)  44.14 
 
 
314 aa  266  2.9999999999999995e-70  Agrobacterium vitis S4  Bacteria  normal  0.512211  n/a   
 
 
-
 
NC_009664  Krad_0590  binding-protein-dependent transport systems inner membrane component  40.98 
 
 
322 aa  265  1e-69  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0414899  normal  0.0385996 
 
 
-
 
NC_012669  Bcav_1533  binding-protein-dependent transport systems inner membrane component  45.07 
 
 
318 aa  264  1e-69  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.384041  normal  0.0165665 
 
 
-
 
NC_011886  Achl_0498  binding-protein-dependent transport systems inner membrane component  42.81 
 
 
317 aa  262  4e-69  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000449996 
 
 
-
 
NC_013205  Aaci_2459  binding-protein-dependent transport systems inner membrane component  41.8 
 
 
331 aa  262  6.999999999999999e-69  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.216304  n/a   
 
 
-
 
NC_013530  Xcel_2535  binding-protein-dependent transport systems inner membrane component  43.26 
 
 
314 aa  259  4e-68  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_2034  binding-protein-dependent transport systems inner membrane component  43.49 
 
 
323 aa  258  8e-68  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.059557  normal  0.598754 
 
 
-
 
NC_011886  Achl_3123  binding-protein-dependent transport systems inner membrane component  45.58 
 
 
317 aa  257  2e-67  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.205507 
 
 
-
 
NC_012669  Bcav_3898  binding-protein-dependent transport systems inner membrane component  44.13 
 
 
324 aa  256  3e-67  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2143  binding-protein-dependent transport systems inner membrane component  42.95 
 
 
318 aa  256  3e-67  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0801  binding-protein-dependent transport systems inner membrane component  44.26 
 
 
319 aa  251  8.000000000000001e-66  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.836257  decreased coverage  0.00115511 
 
 
-
 
NC_012669  Bcav_0920  binding-protein-dependent transport systems inner membrane component  42.09 
 
 
319 aa  251  1e-65  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3323  binding-protein-dependent transport systems inner membrane component  44.56 
 
 
317 aa  251  1e-65  Arthrobacter sp. FB24  Bacteria  normal  0.0473972  n/a   
 
 
-
 
NC_014210  Ndas_0559  binding-protein-dependent transport systems inner membrane component  43.1 
 
 
305 aa  250  2e-65  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3555  binding-protein-dependent transport systems inner membrane component  43.06 
 
 
313 aa  249  3e-65  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.582328  normal  0.269585 
 
 
-
 
NC_013521  Sked_27700  permease component of ABC-type sugar transporter  41.94 
 
 
321 aa  248  6e-65  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479477 
 
 
-
 
NC_013172  Bfae_29720  carbohydrate ABC transporter membrane protein  43.24 
 
 
312 aa  248  1e-64  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  40.26 
 
 
316 aa  245  6e-64  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2230  binding-protein-dependent transport systems inner membrane component  43.82 
 
 
316 aa  243  3e-63  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_05250  carbohydrate ABC transporter membrane protein  42.35 
 
 
309 aa  239  2.9999999999999997e-62  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_1704  putative transport system permease ABC transporter protein  43.77 
 
 
324 aa  239  5e-62  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2648  binding-protein-dependent transport systems inner membrane component  40.88 
 
 
315 aa  238  9e-62  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.604604  n/a   
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  40.99 
 
 
309 aa  238  1e-61  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_013093  Amir_0971  binding-protein-dependent transport systems inner membrane component  40.36 
 
 
318 aa  237  2e-61  Actinosynnema mirum DSM 43827  Bacteria  normal  0.402329  n/a   
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  39.93 
 
 
313 aa  236  4e-61  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3564  binding-protein-dependent transport systems inner membrane component  41.98 
 
 
316 aa  236  4e-61  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.264329 
 
 
-
 
NC_012669  Bcav_0311  binding-protein-dependent transport systems inner membrane component  36.99 
 
 
321 aa  233  2.0000000000000002e-60  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2453  binding-protein-dependent transport systems inner membrane component  40.8 
 
 
314 aa  232  5e-60  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000200699  n/a   
 
 
-
 
NC_013526  Tter_2511  binding-protein-dependent transport systems inner membrane component  42.86 
 
 
317 aa  232  8.000000000000001e-60  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.10809  n/a   
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  39.14 
 
 
305 aa  230  2e-59  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0792  binding-protein-dependent transport systems inner membrane component  42.07 
 
 
320 aa  229  4e-59  Beutenbergia cavernae DSM 12333  Bacteria  normal  hitchhiker  0.00615148 
 
 
-
 
NC_009767  Rcas_2545  binding-protein-dependent transport systems inner membrane component  40.14 
 
 
316 aa  229  5e-59  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.637107  normal  0.115222 
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  40.58 
 
 
283 aa  227  2e-58  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2041  binding-protein-dependent transport systems inner membrane component  39.93 
 
 
305 aa  226  3e-58  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00457854  n/a   
 
 
-
 
NC_009523  RoseRS_2819  binding-protein-dependent transport systems inner membrane component  39.46 
 
 
315 aa  225  7e-58  Roseiflexus sp. RS-1  Bacteria  normal  0.0308401  normal 
 
 
-
 
NC_012669  Bcav_3792  binding-protein-dependent transport systems inner membrane component  42.03 
 
 
285 aa  221  1.9999999999999999e-56  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.168129  normal 
 
 
-
 
NC_009523  RoseRS_3621  binding-protein-dependent transport systems inner membrane component  37.3 
 
 
335 aa  220  3e-56  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5350  binding-protein-dependent transport systems inner membrane component  36.27 
 
 
308 aa  218  7e-56  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.84186  normal  0.48209 
 
 
-
 
NC_013517  Sterm_0718  binding-protein-dependent transport systems inner membrane component  41.5 
 
 
319 aa  217  2e-55  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.491906  n/a   
 
 
-
 
NC_009767  Rcas_0514  binding-protein-dependent transport systems inner membrane component  36.33 
 
 
335 aa  213  1.9999999999999998e-54  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.950902  normal 
 
 
-
 
NC_009616  Tmel_1015  binding-protein-dependent transport systems inner membrane component  39.1 
 
 
292 aa  212  4.9999999999999996e-54  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2136  binding-protein-dependent transport systems inner membrane component  38.49 
 
 
307 aa  208  9e-53  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2506  binding-protein-dependent transport systems inner membrane component  39.1 
 
 
306 aa  206  3e-52  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000185658  n/a   
 
 
-
 
NC_013525  Tter_0263  binding-protein-dependent transport systems inner membrane component  35.06 
 
 
317 aa  202  7e-51  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  40.41 
 
 
299 aa  202  7e-51  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_013525  Tter_0125  binding-protein-dependent transport systems inner membrane component  36.99 
 
 
302 aa  199  5e-50  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013525  Tter_0507  binding-protein-dependent transport systems inner membrane component  38.49 
 
 
309 aa  198  9e-50  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010320  Teth514_1100  binding-protein-dependent transport systems inner membrane component  40.07 
 
 
300 aa  194  1e-48  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011881  Achl_4622  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
317 aa  194  2e-48  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_010571  Oter_1749  binding-protein-dependent transport systems inner membrane component  36.21 
 
 
307 aa  190  2.9999999999999997e-47  Opitutus terrae PB90-1  Bacteria  normal  0.45981  normal 
 
 
-
 
NC_010001  Cphy_1390  binding-protein-dependent transport systems inner membrane component  36.39 
 
 
308 aa  190  2.9999999999999997e-47  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  37.5 
 
 
315 aa  189  5.999999999999999e-47  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12077  sugar ABC transporter membrane protein  37.18 
 
 
300 aa  187  2e-46  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_0382  binding-protein-dependent transport systems inner membrane component  36.77 
 
 
296 aa  186  3e-46  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5821  sugar ABC transporter, permease protein  33.44 
 
 
315 aa  186  4e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  0.286987  normal  0.812253 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  38.99 
 
 
307 aa  186  4e-46  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  38.99 
 
 
307 aa  186  4e-46  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_011661  Dtur_0377  binding-protein-dependent transport systems inner membrane component  34.69 
 
 
294 aa  185  9e-46  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2730  binding-protein-dependent transport systems inner membrane component  37.24 
 
 
300 aa  183  3e-45  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_1297  binding-protein-dependent transport systems inner membrane component  36.82 
 
 
279 aa  183  4.0000000000000006e-45  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.983189  normal 
 
 
-
 
NC_013235  Namu_3848  binding-protein-dependent transport systems inner membrane component  38.06 
 
 
320 aa  182  5.0000000000000004e-45  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0230008  normal  0.429544 
 
 
-
 
NC_012669  Bcav_3002  binding-protein-dependent transport systems inner membrane component  35.59 
 
 
320 aa  182  8.000000000000001e-45  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0512  binding-protein-dependent transport systems inner membrane component  35.64 
 
 
318 aa  180  2e-44  Jonesia denitrificans DSM 20603  Bacteria  hitchhiker  0.000000473727  hitchhiker  0.00124128 
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  35.17 
 
 
309 aa  179  4.999999999999999e-44  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_010184  BcerKBAB4_0481  binding-protein-dependent transport systems inner membrane component  35.5 
 
 
310 aa  178  8e-44  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0630  glycerol-3-phosphate ABC transporter, permease protein, putative  36.67 
 
 
310 aa  177  2e-43  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  33.92 
 
 
288 aa  177  2e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_011658  BCAH187_A0698  putative glycerol-3-phosphate ABC transporter, permease protein  36.16 
 
 
310 aa  177  2e-43  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3032  binding-protein-dependent transport systems inner membrane component  35.03 
 
 
307 aa  177  2e-43  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0604  putative glycerol-3-phosphate ABC transporter, permease protein  36.67 
 
 
310 aa  177  3e-43  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0480  glycerol-3-phosphate ABC transporter, permease  36.18 
 
 
310 aa  176  6e-43  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4735  putative glycerol-3-phosphate ABC transporter, permease protein  36.67 
 
 
310 aa  176  6e-43  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_0623  putative glycerol-3-phosphate ABC transporter, permease protein  36.18 
 
 
310 aa  176  6e-43  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  34.62 
 
 
321 aa  175  7e-43  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2047  binding-protein-dependent transport systems inner membrane component  35.96 
 
 
294 aa  174  9.999999999999999e-43  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.550241  n/a   
 
 
-
 
NC_005957  BT9727_0478  glycerol-3-phosphate ABC transporter, permease  36.18 
 
 
310 aa  174  1.9999999999999998e-42  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0567  glycerol-3-phosphate ABC transporter permease protein  35.86 
 
 
310 aa  174  1.9999999999999998e-42  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
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