More than 300 homologs were found in PanDaTox collection
for query gene Cphy_1709 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_1709  binding-protein-dependent transport systems inner membrane component  100 
 
 
307 aa  617  1e-176  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2339  ABC transporter, permease protein  50.98 
 
 
322 aa  305  6e-82  Clostridium perfringens ATCC 13124  Bacteria  normal  0.552195  n/a   
 
 
-
 
NC_013171  Apre_0144  binding-protein-dependent transport systems inner membrane component  49.5 
 
 
333 aa  303  2.0000000000000002e-81  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2051  sugar transport system (permease) (binding protein dependent transporter)  50.32 
 
 
308 aa  303  3.0000000000000004e-81  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0595  binding-protein-dependent transport systems inner membrane component  51.01 
 
 
313 aa  288  5.0000000000000004e-77  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1715  binding-protein-dependent transport systems inner membrane component  43.67 
 
 
316 aa  268  1e-70  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2571  binding-protein-dependent transport systems inner membrane component  44.74 
 
 
321 aa  264  2e-69  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0695  binding-protein-dependent transport systems inner membrane component  41.18 
 
 
288 aa  223  3e-57  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.0000207262  n/a   
 
 
-
 
NC_012034  Athe_2031  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
315 aa  182  7e-45  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2708  binding-protein-dependent transport systems inner membrane component  33.68 
 
 
315 aa  182  8.000000000000001e-45  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012034  Athe_0085  binding-protein-dependent transport systems inner membrane component  35.37 
 
 
318 aa  181  9.000000000000001e-45  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.0126141  n/a   
 
 
-
 
NC_013172  Bfae_29230  ABC-type polysaccharide transport system, permease component  33.89 
 
 
334 aa  178  1e-43  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2093  binding-protein-dependent transport systems inner membrane component  34.03 
 
 
321 aa  176  4e-43  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.000000000858649  n/a   
 
 
-
 
NC_010001  Cphy_0929  binding-protein-dependent transport systems inner membrane component  35.27 
 
 
330 aa  174  1.9999999999999998e-42  Clostridium phytofermentans ISDg  Bacteria  normal  0.293677  n/a   
 
 
-
 
NC_011898  Ccel_0143  binding-protein-dependent transport systems inner membrane component  37.87 
 
 
318 aa  173  2.9999999999999996e-42  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3209  binding-protein-dependent transport systems inner membrane component  34.95 
 
 
319 aa  171  2e-41  Clostridium phytofermentans ISDg  Bacteria  normal  0.24552  n/a   
 
 
-
 
NC_010001  Cphy_0773  binding-protein-dependent transport systems inner membrane component  34.35 
 
 
311 aa  170  3e-41  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000000374508  n/a   
 
 
-
 
NC_013525  Tter_1103  binding-protein-dependent transport systems inner membrane component  33.79 
 
 
323 aa  169  4e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011898  Ccel_0946  binding-protein-dependent transport systems inner membrane component  36.61 
 
 
322 aa  167  1e-40  Clostridium cellulolyticum H10  Bacteria  normal  0.0463053  n/a   
 
 
-
 
NC_012669  Bcav_1872  binding-protein-dependent transport systems inner membrane component  37.05 
 
 
326 aa  167  2e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.095702  normal  0.124231 
 
 
-
 
NC_011661  Dtur_0312  binding-protein-dependent transport systems inner membrane component  34.36 
 
 
304 aa  167  2.9999999999999998e-40  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_1992  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
327 aa  165  8e-40  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0281  binding-protein-dependent transport systems inner membrane component  31.52 
 
 
315 aa  165  9e-40  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.949472 
 
 
-
 
NC_013515  Smon_0121  binding-protein-dependent transport systems inner membrane component  32.46 
 
 
298 aa  165  9e-40  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_011898  Ccel_0151  binding-protein-dependent transport systems inner membrane component  28.67 
 
 
323 aa  165  1.0000000000000001e-39  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0339  binding-protein-dependent transport systems inner membrane component  33.67 
 
 
333 aa  165  1.0000000000000001e-39  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0664  binding-protein-dependent transport systems inner membrane component  33.89 
 
 
324 aa  164  2.0000000000000002e-39  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.00000000161767  n/a   
 
 
-
 
NC_012034  Athe_2553  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
308 aa  164  3e-39  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.336984  n/a   
 
 
-
 
NC_012034  Athe_2331  binding-protein-dependent transport systems inner membrane component  33.66 
 
 
317 aa  162  5.0000000000000005e-39  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_17870  ABC-type polysaccharide transport system, permease component  36.26 
 
 
327 aa  162  8.000000000000001e-39  Brachybacterium faecium DSM 4810  Bacteria  normal  0.246834  n/a   
 
 
-
 
NC_008541  Arth_3315  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
324 aa  157  1e-37  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0860  binding-protein-dependent transport systems inner membrane component  34.88 
 
 
313 aa  158  1e-37  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1916  binding-protein-dependent transport systems inner membrane component  34.92 
 
 
320 aa  158  1e-37  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00000481644  n/a   
 
 
-
 
NC_011898  Ccel_1253  binding-protein-dependent transport systems inner membrane component  35.34 
 
 
300 aa  156  3e-37  Clostridium cellulolyticum H10  Bacteria  normal  0.601892  n/a   
 
 
-
 
NC_012034  Athe_2054  binding-protein-dependent transport systems inner membrane component  33.56 
 
 
304 aa  155  8e-37  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_0428  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
326 aa  155  1e-36  Arthrobacter sp. FB24  Bacteria  normal  0.278038  n/a   
 
 
-
 
NC_010001  Cphy_2656  binding-protein-dependent transport systems inner membrane component  32.29 
 
 
315 aa  155  1e-36  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3242  binding-protein-dependent transport systems inner membrane component  31.72 
 
 
310 aa  155  1e-36  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0850  binding-protein-dependent transport systems inner membrane component  30.98 
 
 
312 aa  153  4e-36  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.3931  n/a   
 
 
-
 
NC_011898  Ccel_1014  binding-protein-dependent transport systems inner membrane component  34.84 
 
 
323 aa  150  2e-35  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3569  binding-protein-dependent transport systems inner membrane component  30.97 
 
 
324 aa  150  3e-35  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0059  binding-protein-dependent transport systems inner membrane component  29.79 
 
 
320 aa  149  5e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.542171  normal  0.242962 
 
 
-
 
NC_011886  Achl_3113  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
325 aa  148  1.0000000000000001e-34  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_010001  Cphy_1119  binding-protein-dependent transport systems inner membrane component  32.07 
 
 
318 aa  148  1.0000000000000001e-34  Clostridium phytofermentans ISDg  Bacteria  normal  0.0757482  n/a   
 
 
-
 
NC_013521  Sked_02840  ABC-type polysaccharide transport system, permease component  27.56 
 
 
324 aa  147  2.0000000000000003e-34  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.840845  normal 
 
 
-
 
NC_014211  Ndas_5564  binding-protein-dependent transport systems inner membrane component  29.69 
 
 
346 aa  146  4.0000000000000006e-34  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.271716  normal  0.315175 
 
 
-
 
NC_008527  LACR_0761  ABC-type polysaccharide transport system, permease component  30.48 
 
 
316 aa  146  5e-34  Lactococcus lactis subsp. cremoris SK11  Bacteria  hitchhiker  0.000797199  n/a   
 
 
-
 
NC_010001  Cphy_0393  binding-protein-dependent transport systems inner membrane component  30.1 
 
 
326 aa  145  9e-34  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_4041  binding-protein-dependent transport systems inner membrane component  29.33 
 
 
330 aa  143  3e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_2192  binding-protein-dependent transport systems inner membrane component  30.42 
 
 
307 aa  141  9.999999999999999e-33  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3325  binding-protein-dependent transport systems inner membrane component  31.1 
 
 
334 aa  140  1.9999999999999998e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.491227  normal  0.0603947 
 
 
-
 
NC_014165  Tbis_1563  binding-protein-dependent transporter inner membrane component  28.82 
 
 
331 aa  140  3e-32  Thermobispora bispora DSM 43833  Bacteria  normal  0.117544  normal 
 
 
-
 
NC_014151  Cfla_3000  binding-protein-dependent transport systems inner membrane component  30.63 
 
 
328 aa  138  2e-31  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.999287 
 
 
-
 
NC_012669  Bcav_1581  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
305 aa  137  3.0000000000000003e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.595775  normal 
 
 
-
 
NC_013530  Xcel_2785  binding-protein-dependent transport systems inner membrane component  30.62 
 
 
351 aa  136  4e-31  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_2805  binding-protein-dependent transport systems inner membrane component  29.41 
 
 
339 aa  136  4e-31  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0077711 
 
 
-
 
NC_013172  Bfae_01640  ABC-type polysaccharide transport system, permease component  28.03 
 
 
324 aa  136  5e-31  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4681  binding-protein-dependent transport systems inner membrane component  27.91 
 
 
310 aa  135  7.000000000000001e-31  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00295974  normal  0.937314 
 
 
-
 
NC_010001  Cphy_2732  binding-protein-dependent transport systems inner membrane component  32.11 
 
 
316 aa  135  9e-31  Clostridium phytofermentans ISDg  Bacteria  normal  0.0340422  n/a   
 
 
-
 
NC_013521  Sked_20490  ABC-type polysaccharide transport system, permease component  27.34 
 
 
326 aa  134  1.9999999999999998e-30  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.086583  normal  0.344725 
 
 
-
 
NC_013174  Jden_1768  binding-protein-dependent transport systems inner membrane component  31.46 
 
 
320 aa  132  7.999999999999999e-30  Jonesia denitrificans DSM 20603  Bacteria  normal  0.0555688  normal  0.200854 
 
 
-
 
NC_013172  Bfae_04190  ABC-type polysaccharide transport system, permease component  29.01 
 
 
313 aa  132  1.0000000000000001e-29  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2660  binding-protein-dependent transport systems inner membrane component  28.37 
 
 
335 aa  131  1.0000000000000001e-29  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.245622  n/a   
 
 
-
 
NC_013521  Sked_33150  ABC-type polysaccharide transport system, permease component  28.82 
 
 
336 aa  130  2.0000000000000002e-29  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.96599 
 
 
-
 
NC_013174  Jden_2401  binding-protein-dependent transport systems inner membrane component  29.68 
 
 
340 aa  130  3e-29  Jonesia denitrificans DSM 20603  Bacteria  normal  0.0135356  normal 
 
 
-
 
NC_013131  Caci_4937  binding-protein-dependent transport systems inner membrane component  29.54 
 
 
339 aa  130  3e-29  Catenulispora acidiphila DSM 44928  Bacteria  hitchhiker  0.00187301  normal 
 
 
-
 
NC_009664  Krad_0410  binding-protein-dependent transport systems inner membrane component  30.94 
 
 
331 aa  129  6e-29  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0705285 
 
 
-
 
NC_013093  Amir_1981  binding-protein-dependent transport systems inner membrane component  26.39 
 
 
332 aa  128  1.0000000000000001e-28  Actinosynnema mirum DSM 43827  Bacteria  normal  0.837533  n/a   
 
 
-
 
NC_013530  Xcel_0367  binding-protein-dependent transport systems inner membrane component  30.1 
 
 
332 aa  127  2.0000000000000002e-28  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1292  transmembrane lipoprotein  28.82 
 
 
340 aa  127  2.0000000000000002e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.817448 
 
 
-
 
NC_012669  Bcav_3386  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
332 aa  126  4.0000000000000003e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_10090  ABC-type polysaccharide transport system, permease component  29.82 
 
 
331 aa  124  2e-27  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_3819  binding-protein-dependent transport systems inner membrane component  27.34 
 
 
322 aa  123  4e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.595689  normal  0.292651 
 
 
-
 
NC_010001  Cphy_0485  binding-protein-dependent transport systems inner membrane component  30.39 
 
 
326 aa  122  9e-27  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_1610  putative transport system integral membrane protein  29.12 
 
 
341 aa  121  9.999999999999999e-27  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1438  binding-protein-dependent transport systems inner membrane component  31.23 
 
 
335 aa  120  3e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.650576  normal 
 
 
-
 
NC_013172  Bfae_13600  ABC-type polysaccharide transport system, permease component  30.88 
 
 
332 aa  119  3.9999999999999996e-26  Brachybacterium faecium DSM 4810  Bacteria  normal  0.248364  n/a   
 
 
-
 
NC_013530  Xcel_1190  binding-protein-dependent transport systems inner membrane component  30.11 
 
 
292 aa  119  4.9999999999999996e-26  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0859971  n/a   
 
 
-
 
NC_010001  Cphy_1547  binding-protein-dependent transport systems inner membrane component  30.99 
 
 
478 aa  118  9.999999999999999e-26  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.0000265018  n/a   
 
 
-
 
NC_013131  Caci_6722  binding-protein-dependent transport systems inner membrane component  28.71 
 
 
350 aa  117  1.9999999999999998e-25  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.14041  normal 
 
 
-
 
NC_013131  Caci_0128  binding-protein-dependent transport systems inner membrane component  27.93 
 
 
319 aa  117  3e-25  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2171  binding-protein-dependent transport systems inner membrane component  27.37 
 
 
324 aa  109  5e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_05740  ABC-type polysaccharide transport system, permease component  26.97 
 
 
346 aa  108  8.000000000000001e-23  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.767315  normal 
 
 
-
 
NC_012669  Bcav_1320  binding-protein-dependent transport systems inner membrane component  28.07 
 
 
327 aa  108  1e-22  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_2456  binding-protein-dependent transport systems inner membrane component  26.97 
 
 
316 aa  107  2e-22  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  31.85 
 
 
309 aa  106  4e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_013947  Snas_5753  binding-protein-dependent transport systems inner membrane component  31.21 
 
 
329 aa  106  6e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.623467  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  30.45 
 
 
307 aa  104  2e-21  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  30.45 
 
 
307 aa  104  2e-21  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_008148  Rxyl_0622  binding-protein-dependent transport systems inner membrane component  29.36 
 
 
294 aa  103  4e-21  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.431073  n/a   
 
 
-
 
NC_008048  Sala_1022  binding-protein-dependent transport systems inner membrane component  29.08 
 
 
294 aa  102  7e-21  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_1549  MalF-type ABC sugar transport systems permease component  31.08 
 
 
317 aa  100  4e-20  Bifidobacterium longum DJO10A  Bacteria  normal  0.649517  n/a   
 
 
-
 
NC_007908  Rfer_1100  binding-protein-dependent transport systems inner membrane component  25.68 
 
 
311 aa  97.1  3e-19  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.0016702  n/a   
 
 
-
 
NC_010320  Teth514_0754  binding-protein-dependent transport systems inner membrane component  30.07 
 
 
324 aa  96.7  5e-19  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000204062  n/a   
 
 
-
 
NC_008698  Tpen_1056  binding-protein-dependent transport systems inner membrane component  28.42 
 
 
313 aa  94.4  2e-18  Thermofilum pendens Hrk 5  Archaea  normal  0.355645  n/a   
 
 
-
 
NC_013131  Caci_7905  binding-protein-dependent transport systems inner membrane component  32.95 
 
 
336 aa  94.4  2e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_0527  binding-protein-dependent transport systems inner membrane component  27.53 
 
 
296 aa  94.4  2e-18  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000000283647  n/a   
 
 
-
 
NC_014158  Tpau_1637  binding-protein-dependent transport systems inner membrane component  27.23 
 
 
303 aa  94  3e-18  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0695484  n/a   
 
 
-
 
NC_010001  Cphy_3316  binding-protein-dependent transport systems inner membrane component  27.54 
 
 
298 aa  92.4  9e-18  Clostridium phytofermentans ISDg  Bacteria  normal  0.164411  n/a   
 
 
-
 
NC_010816  BLD_1875  MalF-type ABC sugar transport systems permease component  28 
 
 
350 aa  92.4  1e-17  Bifidobacterium longum DJO10A  Bacteria  normal  0.0432685  n/a   
 
 
-
 
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