More than 300 homologs were found in PanDaTox collection
for query gene Sked_27340 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_27340  permease component of ABC-type sugar transporter  100 
 
 
319 aa  627  1e-178  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_0064  binding-protein-dependent transport systems inner membrane component  71.79 
 
 
317 aa  424  1e-117  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4694  binding-protein-dependent transport systems inner membrane component  71.66 
 
 
306 aa  410  1e-113  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.626681 
 
 
-
 
NC_012669  Bcav_0911  binding-protein-dependent transport systems inner membrane component  54.92 
 
 
315 aa  350  2e-95  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.488788  normal 
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  53.74 
 
 
309 aa  278  1e-73  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_013595  Sros_5408  carbohydrate ABC transporter membrane protein 1, CUT1 family  46.31 
 
 
305 aa  248  1e-64  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_1094  binding-protein-dependent transport systems inner membrane component  44.36 
 
 
307 aa  236  4e-61  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013131  Caci_3702  binding-protein-dependent transport systems inner membrane component  43.35 
 
 
327 aa  233  5e-60  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.042733  normal 
 
 
-
 
NC_013131  Caci_8465  binding-protein-dependent transport systems inner membrane component  41.8 
 
 
315 aa  231  1e-59  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.511569  normal  0.0740219 
 
 
-
 
NC_010001  Cphy_3316  binding-protein-dependent transport systems inner membrane component  35.2 
 
 
298 aa  201  9.999999999999999e-51  Clostridium phytofermentans ISDg  Bacteria  normal  0.164411  n/a   
 
 
-
 
NC_011661  Dtur_0174  binding-protein-dependent transport systems inner membrane component  35.69 
 
 
290 aa  191  1e-47  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.417375  n/a   
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  37.92 
 
 
305 aa  176  7e-43  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  34.33 
 
 
309 aa  169  8e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
300 aa  168  1e-40  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  33.11 
 
 
317 aa  167  2e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2511  binding-protein-dependent transport systems inner membrane component  36.33 
 
 
317 aa  164  1.0000000000000001e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.10809  n/a   
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  34.17 
 
 
309 aa  163  3e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  35.2 
 
 
298 aa  163  3e-39  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  31.92 
 
 
316 aa  160  2e-38  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  35 
 
 
283 aa  160  2e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_4082  binding-protein-dependent transport systems inner membrane component  39.22 
 
 
302 aa  161  2e-38  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0311  binding-protein-dependent transport systems inner membrane component  35.55 
 
 
321 aa  160  3e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  32.55 
 
 
313 aa  159  5e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  35.51 
 
 
287 aa  158  1e-37  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  35.35 
 
 
321 aa  158  1e-37  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_27700  permease component of ABC-type sugar transporter  35 
 
 
321 aa  157  2e-37  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479477 
 
 
-
 
NC_009523  RoseRS_2819  binding-protein-dependent transport systems inner membrane component  34.43 
 
 
315 aa  157  3e-37  Roseiflexus sp. RS-1  Bacteria  normal  0.0308401  normal 
 
 
-
 
NC_010577  XfasM23_1549  binding-protein-dependent transport systems inner membrane component  34.88 
 
 
293 aa  156  6e-37  Xylella fastidiosa M23  Bacteria  normal  0.563461  n/a   
 
 
-
 
NC_010513  Xfasm12_1606  ABC transporter sugar permease  34.52 
 
 
293 aa  155  9e-37  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_2545  binding-protein-dependent transport systems inner membrane component  36.12 
 
 
316 aa  154  1e-36  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.637107  normal  0.115222 
 
 
-
 
NC_012669  Bcav_3983  binding-protein-dependent transport systems inner membrane component  37.94 
 
 
302 aa  154  1e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.159905  normal 
 
 
-
 
NC_007413  Ava_0461  binding-protein dependent transport system inner membrane protein  33.81 
 
 
301 aa  152  1e-35  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0667876 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  33 
 
 
306 aa  151  1e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_009767  Rcas_3564  binding-protein-dependent transport systems inner membrane component  33.12 
 
 
316 aa  151  1e-35  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.264329 
 
 
-
 
NC_012669  Bcav_3573  binding-protein-dependent transport systems inner membrane component  35.06 
 
 
353 aa  150  2e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.500594  normal 
 
 
-
 
NC_012669  Bcav_1516  binding-protein-dependent transport systems inner membrane component  32.37 
 
 
315 aa  150  3e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0640497  normal 
 
 
-
 
NC_007802  Jann_2587  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
314 aa  149  4e-35  Jannaschia sp. CCS1  Bacteria  decreased coverage  0.000137508  normal 
 
 
-
 
NC_013526  Tter_2024  binding-protein-dependent transport systems inner membrane component  34.53 
 
 
303 aa  150  4e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000249122  n/a   
 
 
-
 
NC_013526  Tter_2453  binding-protein-dependent transport systems inner membrane component  34.42 
 
 
314 aa  150  4e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000200699  n/a   
 
 
-
 
NC_010717  PXO_00881  ABC transporter sugar permease  33.78 
 
 
294 aa  149  5e-35  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0244413  n/a   
 
 
-
 
NC_013521  Sked_21160  carbohydrate ABC transporter membrane protein  33.8 
 
 
314 aa  149  5e-35  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.103465  normal  0.100515 
 
 
-
 
NC_011071  Smal_2682  binding-protein-dependent transport systems inner membrane component  32.53 
 
 
293 aa  149  5e-35  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.990678  normal 
 
 
-
 
NC_009664  Krad_0590  binding-protein-dependent transport systems inner membrane component  35.69 
 
 
322 aa  149  5e-35  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0414899  normal  0.0385996 
 
 
-
 
NC_013411  GYMC61_1728  binding-protein-dependent transport systems inner membrane component  37.25 
 
 
299 aa  149  5e-35  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_4298  binding-protein-dependent transport systems inner membrane component  36.08 
 
 
294 aa  149  7e-35  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.200183 
 
 
-
 
NC_011726  PCC8801_4236  binding-protein-dependent transport systems inner membrane component  36.08 
 
 
294 aa  149  7e-35  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  32.62 
 
 
288 aa  149  9e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  31.77 
 
 
307 aa  148  1.0000000000000001e-34  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  31.77 
 
 
307 aa  148  1.0000000000000001e-34  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014158  Tpau_1637  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
303 aa  148  1.0000000000000001e-34  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0695484  n/a   
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  31.41 
 
 
299 aa  147  2.0000000000000003e-34  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0285  binding-protein-dependent transport systems inner membrane component  33.12 
 
 
318 aa  147  3e-34  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_0699  binding-protein-dependent transport systems inner membrane component  31.32 
 
 
291 aa  146  6e-34  Dickeya dadantii Ech703  Bacteria  normal  0.216687  n/a   
 
 
-
 
NC_010320  Teth514_1100  binding-protein-dependent transport systems inner membrane component  35.07 
 
 
300 aa  145  6e-34  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0400  binding-protein-dependent transport systems inner membrane component  29.39 
 
 
295 aa  145  1e-33  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.000000000506379  n/a   
 
 
-
 
NC_008541  Arth_3147  binding-protein-dependent transport systems inner membrane component  34.64 
 
 
319 aa  145  1e-33  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.00382098  n/a   
 
 
-
 
NC_013205  Aaci_1216  binding-protein-dependent transport systems inner membrane component  33.57 
 
 
315 aa  144  2e-33  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.00000228392  n/a   
 
 
-
 
NC_013526  Tter_2136  binding-protein-dependent transport systems inner membrane component  33.67 
 
 
307 aa  144  2e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011370  Rleg2_6091  binding-protein-dependent transport systems inner membrane component  35.22 
 
 
292 aa  144  2e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013745  Htur_4489  binding-protein-dependent transport systems inner membrane component  30.49 
 
 
308 aa  143  3e-33  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.283214  n/a   
 
 
-
 
NC_012669  Bcav_2817  binding-protein-dependent transport systems inner membrane component  33 
 
 
310 aa  143  5e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.822068  normal 
 
 
-
 
NC_011661  Dtur_0438  binding-protein-dependent transport systems inner membrane component  33.8 
 
 
302 aa  143  5e-33  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000597022  n/a   
 
 
-
 
NC_013525  Tter_0507  binding-protein-dependent transport systems inner membrane component  32.88 
 
 
309 aa  142  7e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013526  Tter_2041  binding-protein-dependent transport systems inner membrane component  33.57 
 
 
305 aa  142  8e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00457854  n/a   
 
 
-
 
NC_009952  Dshi_1247  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
308 aa  142  8e-33  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.732084 
 
 
-
 
NC_008025  Dgeo_1168  binding-protein-dependent transport systems inner membrane component  33.54 
 
 
310 aa  141  9.999999999999999e-33  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.155614  normal 
 
 
-
 
NC_013411  GYMC61_0532  binding-protein-dependent transport systems inner membrane component  30.03 
 
 
311 aa  141  9.999999999999999e-33  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009616  Tmel_1015  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
292 aa  141  9.999999999999999e-33  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5350  binding-protein-dependent transport systems inner membrane component  30.19 
 
 
308 aa  141  1.9999999999999998e-32  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.84186  normal  0.48209 
 
 
-
 
NC_009565  TBFG_12077  sugar ABC transporter membrane protein  33.09 
 
 
300 aa  140  1.9999999999999998e-32  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2875  binding-protein-dependent transport systems inner membrane component  32.97 
 
 
318 aa  140  3e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal  0.0272583 
 
 
-
 
NC_011886  Achl_0498  binding-protein-dependent transport systems inner membrane component  31.41 
 
 
317 aa  140  3e-32  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000449996 
 
 
-
 
NC_008699  Noca_4634  binding-protein-dependent transport systems inner membrane component  31.93 
 
 
292 aa  140  3e-32  Nocardioides sp. JS614  Bacteria  normal  0.219562  n/a   
 
 
-
 
NC_010001  Cphy_0593  binding-protein-dependent transport systems inner membrane component  31.65 
 
 
308 aa  140  3e-32  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000379306  n/a   
 
 
-
 
NC_012917  PC1_1907  binding-protein-dependent transport systems inner membrane component  34.62 
 
 
296 aa  140  3e-32  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0961638  n/a   
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  33.86 
 
 
291 aa  140  3e-32  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_013530  Xcel_0409  binding-protein-dependent transport systems inner membrane component  34.39 
 
 
300 aa  140  3.9999999999999997e-32  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0382  binding-protein-dependent transport systems inner membrane component  31.54 
 
 
296 aa  139  4.999999999999999e-32  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2111  binding-protein-dependent transport systems inner membrane component  34.74 
 
 
306 aa  139  7.999999999999999e-32  Clostridium cellulolyticum H10  Bacteria  normal  0.157384  n/a   
 
 
-
 
NC_010159  YpAngola_A4017  carbohydrate ABC transporter permease  29.73 
 
 
294 aa  139  7.999999999999999e-32  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_0753  binding-protein-dependent transport systems inner membrane component  35.5 
 
 
312 aa  138  1e-31  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.308461  normal 
 
 
-
 
NC_013421  Pecwa_2200  binding-protein-dependent transport systems inner membrane component  34.27 
 
 
296 aa  138  1e-31  Pectobacterium wasabiae WPP163  Bacteria  normal  0.467118  n/a   
 
 
-
 
NC_012912  Dd1591_1969  binding-protein-dependent transport systems inner membrane component  33.57 
 
 
296 aa  138  1e-31  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2895  binding-protein-dependent transport systems inner membrane component  30.48 
 
 
316 aa  138  1e-31  Roseiflexus sp. RS-1  Bacteria  normal  0.0497455  normal 
 
 
-
 
NC_013174  Jden_0102  binding-protein-dependent transport systems inner membrane component  33.23 
 
 
310 aa  138  1e-31  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.0186923 
 
 
-
 
NC_013595  Sros_6585  lactose transport system (permease)  32.89 
 
 
306 aa  138  1e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0563  binding-protein dependent transport system inner membrane protein  30.8 
 
 
294 aa  137  2e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  0.22835  normal  0.0558608 
 
 
-
 
NC_013517  Sterm_0698  binding-protein-dependent transport systems inner membrane component  34.31 
 
 
293 aa  137  2e-31  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2034  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
296 aa  137  2e-31  Dickeya dadantii Ech703  Bacteria  normal  0.963086  n/a   
 
 
-
 
NC_013946  Mrub_2809  binding-protein-dependent transport systems inner membrane component  34.77 
 
 
279 aa  137  2e-31  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.232459 
 
 
-
 
NC_011881  Achl_4622  binding-protein-dependent transport systems inner membrane component  31.92 
 
 
317 aa  137  2e-31  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013131  Caci_3596  binding-protein-dependent transport systems inner membrane component  31.12 
 
 
325 aa  138  2e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.295531  normal 
 
 
-
 
NC_010571  Oter_4149  binding-protein-dependent transport systems inner membrane component  29.85 
 
 
296 aa  137  3.0000000000000003e-31  Opitutus terrae PB90-1  Bacteria  decreased coverage  0.00598191  normal  0.10352 
 
 
-
 
NC_009708  YpsIP31758_3574  carbohydrate ABC transporter permease  30.36 
 
 
294 aa  137  3.0000000000000003e-31  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3708  binding-protein-dependent transport systems inner membrane component  30.36 
 
 
294 aa  137  3.0000000000000003e-31  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_03080  permease component of ABC-type sugar transporter  33.12 
 
 
322 aa  137  3.0000000000000003e-31  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal 
 
 
-
 
NC_011831  Cagg_0728  binding-protein-dependent transport systems inner membrane component  30.07 
 
 
313 aa  136  4e-31  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000239391  normal 
 
 
-
 
NC_010816  BLD_1549  MalF-type ABC sugar transport systems permease component  34.63 
 
 
317 aa  136  5e-31  Bifidobacterium longum DJO10A  Bacteria  normal  0.649517  n/a   
 
 
-
 
NC_012669  Bcav_3676  binding-protein-dependent transport systems inner membrane component  30.82 
 
 
309 aa  136  5e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2730  binding-protein-dependent transport systems inner membrane component  29.37 
 
 
300 aa  136  5e-31  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
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