Gene Caci_3596 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_3596 
Symbol 
ID8334949 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp4014491 
End bp4015468 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content69% 
IMG OID644956739 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_003114342 
Protein GI256392778 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1175] ABC-type sugar transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.295531 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCCGA CCACACAGAA CCGGACGCGG CCCGTCCGGG GCGCGCGCGG GGCAGCCGCC 
CTGGCCGCGC GCCCCGGACG GGGGTCCCGT CCGCGCCCCG GCACGGCGAA CTGGGCAGGC
TGGGCGTTCC TCGCCCCCGT CACGATCTAC CTGCTGGCCT TCTACGCCTA CCCGATGTAC
CGCAACATCG AGCTGAGCCT GCACCACTAC ACGGTGCGCT CGTTCGTCCA CGGCGGCGCC
CCGTTCACCG GCCTGGACAA CTATCGCAAG GTCCTGAGCG ACCCCGCCTT CCGCCCGGCG
CTGATCCACA CGCTGGTGTT CACCGGCGCG TCGATCCTGT TCCAGTTCTG GATCGGCATG
GGCCTGGCGG TGTTCTTCAG CCGGCACTTC CGGCTCTCGG CGACGCTGCG CGCGCTGTTC
CTCGTGCCCT GGCTGCTGCC GCTGATCGTG TCGGCCTCGA CGTGGTCGTG GATGCTCAAC
AGCGACTCCG GCGTCGTGAA CCACATGCTG CACGGCCTCG GGATCGCCCC GGTGGACTGG
CTCACCTCGC CGAAGTGGTC GCTGGTGTCG GTGATCGTGG CGAACGTGTG GATCGGCATC
CCGTTCAACC TGGTCATGCT CTACAGCGGG ATGCAGGCGG TCTCCCCGGA GCTGTACGAG
GCGGCCGAGC TGGACGGCGC GACCGCGTGG CAGCGCTTCT GGAAGGTCAC CTTCCCGCTG
CTGCGCCCGG TCGCCGCGAT CACGCTGCTG CTCGGGCTGG TCTACACGCT GAAGGTCTTC
GACATCATCT GGATCATGAC CAAGGGGGGT CCGGCGGGCT CCTCGGCGAC CTTCGCGACC
TGGTCCTACC AGCTGGGCTT CGGCAATCTG CTGCCGGAGT TCGGACCCGG CGCGGCGGTC
GGCAACCTGC TGGTCGTGAT GGCACTGGCC TTCGGGCTGA TCTACATCCG GGCCCAGCGC
AAGCAGCGGG AGGCGTGA
 
Protein sequence
MNPTTQNRTR PVRGARGAAA LAARPGRGSR PRPGTANWAG WAFLAPVTIY LLAFYAYPMY 
RNIELSLHHY TVRSFVHGGA PFTGLDNYRK VLSDPAFRPA LIHTLVFTGA SILFQFWIGM
GLAVFFSRHF RLSATLRALF LVPWLLPLIV SASTWSWMLN SDSGVVNHML HGLGIAPVDW
LTSPKWSLVS VIVANVWIGI PFNLVMLYSG MQAVSPELYE AAELDGATAW QRFWKVTFPL
LRPVAAITLL LGLVYTLKVF DIIWIMTKGG PAGSSATFAT WSYQLGFGNL LPEFGPGAAV
GNLLVVMALA FGLIYIRAQR KQREA