More than 300 homologs were found in PanDaTox collection
for query gene BBta_1174 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_1174  putative two-component response regulator  100 
 
 
126 aa  247  5e-65  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.289144  normal  0.876478 
 
 
-
 
NC_011004  Rpal_5220  response regulator receiver protein  77.78 
 
 
126 aa  200  6e-51  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.472283  n/a   
 
 
-
 
NC_007958  RPD_0941  response regulator receiver  80.33 
 
 
125 aa  194  3e-49  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0665  response regulator receiver domain-containing protein  80.33 
 
 
127 aa  192  9e-49  Nitrobacter hamburgensis X14  Bacteria  normal  0.709306  n/a   
 
 
-
 
NC_007406  Nwi_0574  response regulator receiver  79.51 
 
 
130 aa  191  2e-48  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.4385  normal 
 
 
-
 
NC_007778  RPB_0832  response regulator receiver domain-containing protein  80.53 
 
 
125 aa  183  8e-46  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.155773  normal  0.875827 
 
 
-
 
NC_007925  RPC_4869  response regulator receiver domain-containing protein  75 
 
 
123 aa  169  2e-41  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.337506  normal  0.697748 
 
 
-
 
NC_010505  Mrad2831_3997  response regulator receiver protein  61.16 
 
 
121 aa  157  6e-38  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0883649 
 
 
-
 
NC_010172  Mext_2860  response regulator receiver  60.33 
 
 
121 aa  156  8e-38  Methylobacterium extorquens PA1  Bacteria  normal  0.388237  normal 
 
 
-
 
NC_011757  Mchl_3086  response regulator receiver protein  60.33 
 
 
121 aa  156  8e-38  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.342425  normal 
 
 
-
 
NC_010511  M446_2198  response regulator receiver protein  60.32 
 
 
127 aa  155  1e-37  Methylobacterium sp. 4-46  Bacteria  normal  0.16592  normal  0.62826 
 
 
-
 
NC_011894  Mnod_1157  response regulator receiver protein  59.52 
 
 
127 aa  154  3e-37  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.116971  n/a   
 
 
-
 
NC_010725  Mpop_2980  response regulator receiver protein  59.5 
 
 
121 aa  154  3e-37  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_4023  two component response regulator  55.37 
 
 
119 aa  130  5e-30  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3569  response regulator receiver protein  55.37 
 
 
119 aa  129  1.0000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.146165 
 
 
-
 
NC_012850  Rleg_3862  response regulator receiver protein  54.55 
 
 
119 aa  128  2.0000000000000002e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.762525  normal  0.105944 
 
 
-
 
NC_009719  Plav_1598  response regulator receiver protein  51.97 
 
 
127 aa  127  7.000000000000001e-29  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_3094  response regulator receiver protein  51.24 
 
 
121 aa  125  2.0000000000000002e-28  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2540  response regulator receiver protein  57.85 
 
 
119 aa  122  2e-27  Sinorhizobium medicae WSM419  Bacteria  normal  0.676292  normal 
 
 
-
 
NC_008347  Mmar10_2507  response regulator receiver protein  39.67 
 
 
121 aa  88.2  3e-17  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3739  response regulator receiver sensor signal transduction histidine kinase  41.8 
 
 
379 aa  88.2  4e-17  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_3634  response regulator receiver sensor signal transduction histidine kinase  40.98 
 
 
379 aa  86.3  1e-16  Geobacter bemidjiensis Bem  Bacteria  normal  0.0261897  n/a   
 
 
-
 
NC_009483  Gura_0224  response regulator receiver sensor signal transduction histidine kinase  40.16 
 
 
379 aa  84.7  4e-16  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0202  response regulator receiver sensor signal transduction histidine kinase  40.16 
 
 
374 aa  84.7  4e-16  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_002939  GSU0149  sensor histidine kinase/response regulator  38.4 
 
 
371 aa  83.2  0.000000000000001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_0513  multi-sensor hybrid histidine kinase  38.84 
 
 
803 aa  82.8  0.000000000000001  Sphingomonas wittichii RW1  Bacteria  normal  0.883754  normal 
 
 
-
 
NC_007760  Adeh_0504  two component, sigma54 specific, Fis family transcriptional regulator  38.1 
 
 
443 aa  82.8  0.000000000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1287  response regulator receiver domain-containing protein  42.34 
 
 
127 aa  81.6  0.000000000000003  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.442215  n/a   
 
 
-
 
NC_011145  AnaeK_0537  two component, sigma54 specific, transcriptional regulator, Fis family  37.3 
 
 
446 aa  81.3  0.000000000000004  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0533  two component, sigma54 specific, transcriptional regulator, Fis family  37.3 
 
 
443 aa  81.3  0.000000000000004  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.141325  n/a   
 
 
-
 
NC_008554  Sfum_2092  two component, sigma54 specific, Fis family transcriptional regulator  31.45 
 
 
462 aa  80.9  0.000000000000005  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.131918 
 
 
-
 
NC_009943  Dole_1777  two component, sigma54 specific, Fis family transcriptional regulator  33.91 
 
 
465 aa  80.5  0.000000000000007  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  35.59 
 
 
462 aa  80.5  0.000000000000008  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_010814  Glov_2786  two component, sigma54 specific, transcriptional regulator, Fis family  34.92 
 
 
480 aa  79  0.00000000000002  Geobacter lovleyi SZ  Bacteria  normal  0.543097  n/a   
 
 
-
 
NC_007794  Saro_1446  multi-sensor hybrid histidine kinase  36.36 
 
 
811 aa  79.3  0.00000000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  33.33 
 
 
458 aa  78.2  0.00000000000004  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2453  two component, sigma54 specific, Fis family transcriptional regulator  35.9 
 
 
461 aa  78.2  0.00000000000004  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000196128  normal 
 
 
-
 
NC_013173  Dbac_2666  two component, sigma54 specific, transcriptional regulator, Fis family  36.29 
 
 
459 aa  77.8  0.00000000000004  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3108  response regulator receiver domain-containing protein  40.91 
 
 
120 aa  77.8  0.00000000000005  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_0797  two component, sigma54 specific, transcriptional regulator, Fis family  33.61 
 
 
472 aa  77.4  0.00000000000006  Rhodothermus marinus DSM 4252  Bacteria  normal  0.241811  n/a   
 
 
-
 
NC_010571  Oter_1278  two component, sigma54 specific, Fis family transcriptional regulator  36.44 
 
 
452 aa  77.4  0.00000000000006  Opitutus terrae PB90-1  Bacteria  normal  0.902353  normal 
 
 
-
 
NC_009720  Xaut_2816  response regulator receiver protein  36.36 
 
 
120 aa  77.4  0.00000000000006  Xanthobacter autotrophicus Py2  Bacteria  normal  0.101903  normal  0.104606 
 
 
-
 
NC_007498  Pcar_2145  two component signal transduction response regulator  33.33 
 
 
492 aa  77  0.00000000000007  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0863  response regulator receiver protein  38.84 
 
 
118 aa  77  0.00000000000008  Caulobacter sp. K31  Bacteria  normal  normal  0.385882 
 
 
-
 
NC_009767  Rcas_0845  response regulator receiver modulated metal dependent phosphohydrolase  38.21 
 
 
508 aa  77  0.00000000000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.903712  hitchhiker  0.00198769 
 
 
-
 
NC_009719  Plav_1998  response regulator receiver protein  43.86 
 
 
120 aa  77  0.00000000000009  Parvibaculum lavamentivorans DS-1  Bacteria  hitchhiker  0.00000230643  normal 
 
 
-
 
NC_011146  Gbem_2805  two component, sigma54 specific, transcriptional regulator, Fis family  36.51 
 
 
478 aa  76.6  0.0000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  0.228775  n/a   
 
 
-
 
NC_009972  Haur_0852  GAF sensor hybrid histidine kinase  31.2 
 
 
1055 aa  76.6  0.0000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0520  multi-sensor signal transduction histidine kinase  36.29 
 
 
556 aa  76.3  0.0000000000001  Roseiflexus sp. RS-1  Bacteria  normal  0.936608  normal  0.731504 
 
 
-
 
NC_008783  BARBAKC583_0612  response regulator  36.97 
 
 
120 aa  76.6  0.0000000000001  Bartonella bacilliformis KC583  Bacteria  normal  0.124392  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  34.75 
 
 
473 aa  75.5  0.0000000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_014212  Mesil_0142  two component transcriptional regulator, winged helix family  33.33 
 
 
221 aa  75.9  0.0000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.709604 
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  34.75 
 
 
473 aa  75.5  0.0000000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_010814  Glov_3603  response regulator receiver protein  30.4 
 
 
131 aa  75.5  0.0000000000002  Geobacter lovleyi SZ  Bacteria  normal  0.656399  n/a   
 
 
-
 
NC_012918  GM21_1405  two component, sigma54 specific, transcriptional regulator, Fis family  36.51 
 
 
478 aa  75.9  0.0000000000002  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000117702 
 
 
-
 
NC_009831  Ssed_2316  response regulator receiver protein  37.84 
 
 
226 aa  75.9  0.0000000000002  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.00000147543  hitchhiker  0.000888492 
 
 
-
 
NC_009485  BBta_5491  cell cycle control histidine kinase CckA  31.93 
 
 
892 aa  75.5  0.0000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.606378  normal 
 
 
-
 
NC_008254  Meso_2750  response regulator receiver protein  38.66 
 
 
120 aa  75.9  0.0000000000002  Chelativorans sp. BNC1  Bacteria  hitchhiker  0.000684047  n/a   
 
 
-
 
NC_008554  Sfum_3738  response regulator receiver modulated metal dependent phosphohydrolase  38.74 
 
 
384 aa  75.9  0.0000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1495  sigma-54 dependent DNA-binding response regulator  34.43 
 
 
458 aa  75.5  0.0000000000003  Geobacter sulfurreducens PCA  Bacteria  normal  0.301103  n/a   
 
 
-
 
NC_013173  Dbac_0831  multi-sensor hybrid histidine kinase  35.4 
 
 
957 aa  75.5  0.0000000000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0302  two component transcriptional regulator, winged helix family  34.23 
 
 
221 aa  75.1  0.0000000000003  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  34.75 
 
 
473 aa  74.7  0.0000000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_1627  response regulator receiver protein  31.09 
 
 
119 aa  75.5  0.0000000000003  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0754  response regulator receiver domain-containing protein  40.54 
 
 
120 aa  74.7  0.0000000000004  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1524  multi-sensor hybrid histidine kinase  32.48 
 
 
853 aa  74.7  0.0000000000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.334346 
 
 
-
 
NC_007964  Nham_1398  multi-sensor hybrid histidine kinase  33.33 
 
 
853 aa  74.7  0.0000000000004  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2719  response regulator receiver protein  36.67 
 
 
120 aa  74.7  0.0000000000004  Sinorhizobium medicae WSM419  Bacteria  normal  0.0959171  normal 
 
 
-
 
NC_002939  GSU0008  sensory box histidine kinase/response regulator  39.83 
 
 
516 aa  74.3  0.0000000000005  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0241  response regulator receiver protein  36.75 
 
 
123 aa  74.3  0.0000000000005  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5905  two component transcriptional regulator, winged helix family  34.75 
 
 
237 aa  73.9  0.0000000000006  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_2379  two component, sigma54 specific, Fis family transcriptional regulator  36.51 
 
 
446 aa  73.9  0.0000000000006  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.373235  normal  0.0399931 
 
 
-
 
NC_013411  GYMC61_1696  two component transcriptional regulator, winged helix family  37.74 
 
 
224 aa  73.9  0.0000000000007  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013440  Hoch_3222  two component, sigma54 specific, transcriptional regulator, Fis family  35.71 
 
 
447 aa  73.9  0.0000000000007  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0905113 
 
 
-
 
NC_010814  Glov_1377  two component, sigma54 specific, transcriptional regulator, Fis family  35.77 
 
 
462 aa  73.6  0.0000000000008  Geobacter lovleyi SZ  Bacteria  normal  0.244526  n/a   
 
 
-
 
NC_012850  Rleg_3624  response regulator receiver protein  36.67 
 
 
120 aa  73.6  0.0000000000008  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_0135  response regulator receiver protein  38.74 
 
 
124 aa  73.6  0.0000000000008  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3325  response regulator receiver protein  36.67 
 
 
120 aa  73.6  0.0000000000008  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.745241 
 
 
-
 
NC_007517  Gmet_2563  two component, sigma54 specific, Fis family transcriptional regulator  34.92 
 
 
480 aa  73.6  0.0000000000009  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00247378 
 
 
-
 
NC_002939  GSU1003  nitrogen regulation protein NR(I)  36.22 
 
 
481 aa  73.2  0.000000000001  Geobacter sulfurreducens PCA  Bacteria  normal  0.158383  n/a   
 
 
-
 
NC_011769  DvMF_2109  two component, sigma54 specific, transcriptional regulator, Fis family  36.07 
 
 
515 aa  73.2  0.000000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011989  Avi_3746  chemotaxis response regulator  38.53 
 
 
121 aa  73.2  0.000000000001  Agrobacterium vitis S4  Bacteria  normal  0.193057  n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  29.66 
 
 
457 aa  73.2  0.000000000001  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_3079  two component, sigma54 specific, Fis family transcriptional regulator  36.51 
 
 
480 aa  73.2  0.000000000001  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00177638  n/a   
 
 
-
 
NC_014230  CA2559_03275  two-component system, transcriptional regulatory protein  30.91 
 
 
234 aa  72  0.000000000002  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5379  DNA-binding response regulator  34.86 
 
 
223 aa  72.4  0.000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1939  sensory box sensor histidine kinase/response regulator  34.43 
 
 
1328 aa  72  0.000000000002  Colwellia psychrerythraea 34H  Bacteria  normal  0.282055  n/a   
 
 
-
 
NC_011773  BCAH820_5353  DNA-binding response regulator  34.86 
 
 
223 aa  72.4  0.000000000002  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005957  BT9727_4944  DNA-binding response regulator  34.86 
 
 
223 aa  72.8  0.000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0109954  n/a   
 
 
-
 
NC_006274  BCZK4959  DNA-binding response regulator  34.86 
 
 
223 aa  72.4  0.000000000002  Bacillus cereus E33L  Bacteria  hitchhiker  0.000160223  n/a   
 
 
-
 
NC_009767  Rcas_1273  multi-sensor signal transduction histidine kinase  35.54 
 
 
556 aa  72.4  0.000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.12815  normal  0.758765 
 
 
-
 
NC_009675  Anae109_4257  two component, sigma54 specific, Fis family transcriptional regulator  39.42 
 
 
463 aa  72.8  0.000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_3375  two component, sigma-54 specific, Fis family transcriptional regulator  36.13 
 
 
461 aa  72.4  0.000000000002  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0302  two component, sigma54 specific, Fis family transcriptional regulator  40.95 
 
 
465 aa  72.8  0.000000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1260  response regulator receiver protein  36.29 
 
 
331 aa  72.4  0.000000000002  Meiothermus ruber DSM 1279  Bacteria  normal  0.208704  normal 
 
 
-
 
NC_008048  Sala_1335  response regulator receiver protein  37.4 
 
 
125 aa  72  0.000000000002  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.51819  normal  0.0884587 
 
 
-
 
NC_011658  BCAH187_A5433  DNA-binding response regulator  34.86 
 
 
223 aa  72.4  0.000000000002  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5055  two component transcriptional regulator  34.86 
 
 
223 aa  72.8  0.000000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2709  response regulator receiver sensor signal transduction histidine kinase  40.52 
 
 
501 aa  72  0.000000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  0.710197  normal  0.745824 
 
 
-
 
NC_009943  Dole_1938  response regulator receiver protein  34.92 
 
 
244 aa  72.8  0.000000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
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