More than 300 homologs were found in PanDaTox collection
for query gene Dole_1938 on replicon NC_009943
Organism: Desulfococcus oleovorans Hxd3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009943  Dole_1938  response regulator receiver protein  100 
 
 
244 aa  499  1e-140  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1977  response regulator receiver protein  46.61 
 
 
265 aa  217  1e-55  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1048  response regulator receiver protein  39.37 
 
 
814 aa  176  4e-43  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_6827  response regulator receiver protein  34.15 
 
 
389 aa  137  1e-31  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1260  response regulator receiver protein  36.6 
 
 
331 aa  135  4e-31  Meiothermus ruber DSM 1279  Bacteria  normal  0.208704  normal 
 
 
-
 
NC_009943  Dole_0049  response regulator receiver protein  31.86 
 
 
226 aa  114  1.0000000000000001e-24  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011313  VSAL_II0052  response regulator protein  40 
 
 
299 aa  88.2  1e-16  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.189873  n/a   
 
 
-
 
NC_012918  GM21_3739  response regulator receiver sensor signal transduction histidine kinase  42.98 
 
 
379 aa  86.3  4e-16  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008009  Acid345_4648  response regulator receiver protein  27.34 
 
 
253 aa  85.5  7e-16  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.485097  normal 
 
 
-
 
NC_011146  Gbem_3634  response regulator receiver sensor signal transduction histidine kinase  41.23 
 
 
379 aa  84.3  0.000000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  0.0261897  n/a   
 
 
-
 
NC_007517  Gmet_2679  response regulator receiver domain-containing protein  33.64 
 
 
129 aa  83.6  0.000000000000003  Geobacter metallireducens GS-15  Bacteria  normal  0.380915  normal  0.27601 
 
 
-
 
NC_002620  TC0753  sigma-54 dependent response regulator  36.29 
 
 
387 aa  82.4  0.000000000000005  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4159  nitrogen regulation protein NR(I)  40.57 
 
 
470 aa  82.8  0.000000000000005  Dickeya zeae Ech1591  Bacteria  normal  0.086406  n/a   
 
 
-
 
NC_012917  PC1_3049  putative two component, sigma54 specific, transcriptional regulator, Fis family  36.11 
 
 
445 aa  82.8  0.000000000000005  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3603  response regulator receiver protein  36.04 
 
 
131 aa  82.4  0.000000000000005  Geobacter lovleyi SZ  Bacteria  normal  0.656399  n/a   
 
 
-
 
NC_010814  Glov_1377  two component, sigma54 specific, transcriptional regulator, Fis family  37.82 
 
 
462 aa  82  0.000000000000007  Geobacter lovleyi SZ  Bacteria  normal  0.244526  n/a   
 
 
-
 
NC_007908  Rfer_2738  response regulator receiver domain-containing protein  33.61 
 
 
194 aa  81.6  0.00000000000001  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.000186206  n/a   
 
 
-
 
CP001637  EcDH1_4118  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  38.68 
 
 
469 aa  80.5  0.00000000000002  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_4148  nitrogen regulation protein NR(I)  38.68 
 
 
469 aa  80.5  0.00000000000002  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.221467 
 
 
-
 
NC_012880  Dd703_3962  nitrogen regulation protein NR(I)  39.62 
 
 
470 aa  80.9  0.00000000000002  Dickeya dadantii Ech703  Bacteria  normal  0.389706  n/a   
 
 
-
 
NC_011353  ECH74115_5314  nitrogen regulation protein NR(I)  38.68 
 
 
472 aa  80.5  0.00000000000002  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.111299  normal  0.738695 
 
 
-
 
NC_009801  EcE24377A_4390  nitrogen regulation protein NR(I)  38.68 
 
 
469 aa  80.5  0.00000000000002  Escherichia coli E24377A  Bacteria  normal  0.127215  n/a   
 
 
-
 
NC_010498  EcSMS35_4253  nitrogen regulation protein NR(I)  38.68 
 
 
472 aa  80.5  0.00000000000002  Escherichia coli SMS-3-5  Bacteria  normal  0.177692  normal  0.167125 
 
 
-
 
NC_009943  Dole_3272  PAS/PAC sensor hybrid histidine kinase  36.69 
 
 
962 aa  80.9  0.00000000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_03753  fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein  38.68 
 
 
469 aa  80.5  0.00000000000003  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1226  putative two component, sigma54 specific, transcriptional regulator, Fis family  35 
 
 
445 aa  80.1  0.00000000000003  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A4095  nitrogen regulation protein NR(I)  38.68 
 
 
469 aa  80.5  0.00000000000003  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  35.65 
 
 
473 aa  80.1  0.00000000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2934  response regulator receiver protein  34.55 
 
 
129 aa  80.1  0.00000000000003  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000852899  n/a   
 
 
-
 
NC_010658  SbBS512_E4344  nitrogen regulation protein NR(I)  38.68 
 
 
469 aa  80.5  0.00000000000003  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03702  hypothetical protein  38.68 
 
 
469 aa  80.5  0.00000000000003  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_4098  nitrogen regulation protein NR(I)  38.68 
 
 
470 aa  79.7  0.00000000000004  Enterobacter sp. 638  Bacteria  normal  normal  0.797915 
 
 
-
 
NC_011883  Ddes_0187  two component, sigma54 specific, transcriptional regulator, Fis family  34.82 
 
 
457 aa  79.3  0.00000000000005  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1558  response regulator receiver protein  39.82 
 
 
566 aa  79  0.00000000000006  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1117  response regulator  32.73 
 
 
127 aa  79  0.00000000000007  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4505  nitrogen regulation protein NR(I)  38.68 
 
 
470 aa  79  0.00000000000007  Pectobacterium wasabiae WPP163  Bacteria  normal  0.565329  n/a   
 
 
-
 
NC_012917  PC1_4222  nitrogen regulation protein NR(I)  38.68 
 
 
470 aa  79  0.00000000000007  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.327829  n/a   
 
 
-
 
NC_011149  SeAg_B2721  sigma-54 dependent transcriptional regulator/response regulator  38.52 
 
 
445 aa  78.6  0.00000000000008  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A2938  transcriptional regulator ZraR  38.52 
 
 
445 aa  78.6  0.00000000000008  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2825  transcriptional regulator ZraR  38.52 
 
 
445 aa  78.6  0.00000000000008  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.479389  normal 
 
 
-
 
NC_011080  SNSL254_A2763  transcriptional regulator ZraR  38.52 
 
 
445 aa  78.6  0.00000000000008  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  36.75 
 
 
454 aa  78.6  0.00000000000008  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2804  transcriptional regulatory protein ZraR  38.52 
 
 
445 aa  78.6  0.00000000000008  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_4883  nitrogen regulation protein NR(I)  38.68 
 
 
470 aa  78.6  0.00000000000009  Serratia proteamaculans 568  Bacteria  normal  0.177074  hitchhiker  0.0000322182 
 
 
-
 
NC_009943  Dole_1090  response regulator receiver protein  37.04 
 
 
846 aa  78.6  0.00000000000009  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.874134  n/a   
 
 
-
 
NC_009832  Spro_3651  two component, sigma54 specific, Fis family transcriptional regulator  38.98 
 
 
445 aa  78.2  0.0000000000001  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp1726  hypothetical protein  37.39 
 
 
437 aa  77.8  0.0000000000001  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1726  hypothetical protein  37.39 
 
 
437 aa  77.8  0.0000000000001  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_013440  Hoch_6888  response regulator receiver protein  28.57 
 
 
875 aa  77.8  0.0000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.3668  normal 
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  34.78 
 
 
473 aa  78.2  0.0000000000001  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_008554  Sfum_0821  response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase  35.14 
 
 
1139 aa  77.8  0.0000000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.187038 
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  34.78 
 
 
473 aa  78.2  0.0000000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_011901  Tgr7_3262  nitrogen metabolism transcriptional regulator, NtrC, Fis Family  34.26 
 
 
471 aa  78.2  0.0000000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  34.78 
 
 
470 aa  77  0.0000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_012912  Dd1591_1085  putative two component, sigma54 specific, transcriptional regulator, Fis family  39.66 
 
 
445 aa  77.8  0.0000000000002  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1312  two component, sigma54 specific, Fis family transcriptional regulator  37.72 
 
 
455 aa  77.4  0.0000000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  0.502008  n/a   
 
 
-
 
NC_007492  Pfl01_4840  two-component response regulator PilR  35.38 
 
 
448 aa  77.4  0.0000000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.43512  normal  0.760188 
 
 
-
 
NC_011891  A2cp1_3829  response regulator receiver protein  25.32 
 
 
713 aa  77  0.0000000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0106552  n/a   
 
 
-
 
NC_011769  DvMF_2149  two component, sigma54 specific, transcriptional regulator, Fis family  35.59 
 
 
477 aa  77  0.0000000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007517  Gmet_2034  two component, sigma54 specific, Fis family transcriptional regulator  33.98 
 
 
449 aa  77.8  0.0000000000002  Geobacter metallireducens GS-15  Bacteria  normal  0.0792682  normal  0.101595 
 
 
-
 
NC_007517  Gmet_2453  two component, sigma54 specific, Fis family transcriptional regulator  38.53 
 
 
461 aa  77.4  0.0000000000002  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000196128  normal 
 
 
-
 
NC_009943  Dole_1777  two component, sigma54 specific, Fis family transcriptional regulator  34.26 
 
 
465 aa  77  0.0000000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3039  two component, sigma54 specific, Fis family transcriptional regulator  38.4 
 
 
445 aa  77.8  0.0000000000002  Enterobacter sp. 638  Bacteria  normal  0.992832  normal  0.337936 
 
 
-
 
NC_008781  Pnap_0436  response regulator receiver protein  32.79 
 
 
370 aa  77.4  0.0000000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_0025  nitrogen regulation protein NR(I)  37.74 
 
 
470 aa  76.6  0.0000000000003  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.151443  n/a   
 
 
-
 
NC_002939  GSU1129  sigma-54 dependent DNA-binding response regulator  37.61 
 
 
453 aa  76.6  0.0000000000003  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A0027  nitrogen regulation protein NR(I)  37.74 
 
 
470 aa  76.6  0.0000000000003  Yersinia pestis Angola  Bacteria  normal  0.307133  normal 
 
 
-
 
NC_011149  SeAg_B4237  nitrogen regulation protein NR(I)  37.74 
 
 
469 aa  76.6  0.0000000000003  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2553  response regulator receiver protein  33.64 
 
 
126 aa  77  0.0000000000003  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.1194499999999997e-20 
 
 
-
 
NC_010465  YPK_4191  nitrogen regulation protein NR(I)  37.74 
 
 
470 aa  76.6  0.0000000000003  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.500264  n/a   
 
 
-
 
NC_011080  SNSL254_A4287  nitrogen regulation protein NR(I)  37.74 
 
 
469 aa  76.6  0.0000000000003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.0756679  normal 
 
 
-
 
NC_011083  SeHA_C4333  nitrogen regulation protein NR(I)  37.74 
 
 
469 aa  76.6  0.0000000000003  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.140715  normal 
 
 
-
 
NC_007760  Adeh_3688  response regulator receiver domain-containing protein  25.32 
 
 
718 aa  77  0.0000000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1660  response regulator receiver protein  33.64 
 
 
126 aa  77  0.0000000000003  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A4216  nitrogen regulation protein NR(I)  37.74 
 
 
469 aa  76.6  0.0000000000003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.295301  normal 
 
 
-
 
NC_011205  SeD_A4394  nitrogen regulation protein NR(I)  37.74 
 
 
469 aa  76.6  0.0000000000003  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_001908  nitrogen regulation protein NR(I)  33.02 
 
 
467 aa  76.3  0.0000000000004  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1341  response regulator receiver protein  34.17 
 
 
301 aa  76.6  0.0000000000004  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1989  sigma-54 dependent DNA-binding response regulator  36.27 
 
 
444 aa  76.3  0.0000000000004  Geobacter sulfurreducens PCA  Bacteria  normal  0.519588  n/a   
 
 
-
 
NC_011145  AnaeK_3746  response regulator receiver protein  25.32 
 
 
714 aa  76.3  0.0000000000004  Anaeromyxobacter sp. K  Bacteria  normal  0.374039  n/a   
 
 
-
 
NC_007796  Mhun_0494  CheA signal transduction histidine kinases  39.42 
 
 
798 aa  76.3  0.0000000000004  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_010814  Glov_2823  two component, sigma54 specific, transcriptional regulator, Fis family  34.86 
 
 
447 aa  76.6  0.0000000000004  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0628  two component, sigma54 specific, transcriptional regulator, Fis family  31.39 
 
 
446 aa  76.3  0.0000000000004  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2623  two component, sigma54 specific, Fis family transcriptional regulator  38.18 
 
 
456 aa  76.3  0.0000000000004  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_0337  response regulator receiver protein  36.11 
 
 
139 aa  76.3  0.0000000000005  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0132867 
 
 
-
 
NC_010814  Glov_1166  two component, sigma54 specific, transcriptional regulator, Fis family  39.81 
 
 
447 aa  75.9  0.0000000000005  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02446  predicted DNA-binding response regulator in two-component system  34.34 
 
 
444 aa  75.9  0.0000000000006  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1114  putative two component, sigma54 specific, transcriptional regulator, Fis family  34.34 
 
 
444 aa  75.9  0.0000000000006  Escherichia coli DH1  Bacteria  normal  0.922386  n/a   
 
 
-
 
NC_010658  SbBS512_E2919  sigma-54 dependent response regulator  34.34 
 
 
444 aa  75.9  0.0000000000006  Shigella boydii CDC 3083-94  Bacteria  normal  0.70731  n/a   
 
 
-
 
NC_010424  Daud_0677  response regulator receiver modulated metal dependent phosphohydrolase  31.97 
 
 
343 aa  75.9  0.0000000000006  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.756866  n/a   
 
 
-
 
NC_010468  EcolC_1123  two component, sigma54 specific, Fis family transcriptional regulator  34.34 
 
 
444 aa  75.9  0.0000000000006  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_3788  sigma-54 dependent response regulator  34.34 
 
 
444 aa  75.9  0.0000000000006  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_08281  two component, sigma54 specific, transcriptional regulator, Fis family protein  29.57 
 
 
388 aa  75.5  0.0000000000006  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2707  sigma-54 dependent response regulator  34.34 
 
 
444 aa  75.9  0.0000000000006  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  36.45 
 
 
462 aa  75.9  0.0000000000006  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_010498  EcSMS35_2707  sigma-54 dependent response regulator  34.34 
 
 
444 aa  75.9  0.0000000000006  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_02410  hypothetical protein  34.34 
 
 
444 aa  75.9  0.0000000000006  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3814  response regulator receiver protein  25.32 
 
 
735 aa  75.9  0.0000000000006  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.706947  hitchhiker  0.0056347 
 
 
-
 
NC_009801  EcE24377A_2839  sigma-54 dependent response regulator  34.34 
 
 
444 aa  75.9  0.0000000000006  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3534  response regulator receiver protein  32.5 
 
 
393 aa  75.5  0.0000000000007  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
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