More than 300 homologs were found in PanDaTox collection
for query gene Nham_0665 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007964  Nham_0665  response regulator receiver domain-containing protein  100 
 
 
127 aa  242  9.999999999999999e-64  Nitrobacter hamburgensis X14  Bacteria  normal  0.709306  n/a   
 
 
-
 
NC_007406  Nwi_0574  response regulator receiver  90.98 
 
 
130 aa  213  8e-55  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.4385  normal 
 
 
-
 
NC_011004  Rpal_5220  response regulator receiver protein  82.11 
 
 
126 aa  196  7.999999999999999e-50  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.472283  n/a   
 
 
-
 
NC_007958  RPD_0941  response regulator receiver  80 
 
 
125 aa  194  5.000000000000001e-49  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1174  putative two-component response regulator  80.33 
 
 
126 aa  192  9e-49  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.289144  normal  0.876478 
 
 
-
 
NC_007778  RPB_0832  response regulator receiver domain-containing protein  83.93 
 
 
125 aa  186  8e-47  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.155773  normal  0.875827 
 
 
-
 
NC_007925  RPC_4869  response regulator receiver domain-containing protein  81.25 
 
 
123 aa  177  2.9999999999999997e-44  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.337506  normal  0.697748 
 
 
-
 
NC_010172  Mext_2860  response regulator receiver  64.46 
 
 
121 aa  157  4e-38  Methylobacterium extorquens PA1  Bacteria  normal  0.388237  normal 
 
 
-
 
NC_011757  Mchl_3086  response regulator receiver protein  64.46 
 
 
121 aa  157  4e-38  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.342425  normal 
 
 
-
 
NC_010505  Mrad2831_3997  response regulator receiver protein  66.12 
 
 
121 aa  156  9e-38  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0883649 
 
 
-
 
NC_010725  Mpop_2980  response regulator receiver protein  63.64 
 
 
121 aa  156  1e-37  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_2198  response regulator receiver protein  63.64 
 
 
127 aa  152  1e-36  Methylobacterium sp. 4-46  Bacteria  normal  0.16592  normal  0.62826 
 
 
-
 
NC_011894  Mnod_1157  response regulator receiver protein  62.61 
 
 
127 aa  145  1.0000000000000001e-34  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.116971  n/a   
 
 
-
 
NC_011989  Avi_4023  two component response regulator  61.16 
 
 
119 aa  138  1.9999999999999998e-32  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3569  response regulator receiver protein  61.34 
 
 
119 aa  133  6.0000000000000005e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.146165 
 
 
-
 
NC_012850  Rleg_3862  response regulator receiver protein  60.33 
 
 
119 aa  133  9.999999999999999e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.762525  normal  0.105944 
 
 
-
 
NC_009636  Smed_2540  response regulator receiver protein  61.98 
 
 
119 aa  126  1.0000000000000001e-28  Sinorhizobium medicae WSM419  Bacteria  normal  0.676292  normal 
 
 
-
 
NC_009719  Plav_1598  response regulator receiver protein  50.4 
 
 
127 aa  120  5e-27  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_3094  response regulator receiver protein  52.07 
 
 
121 aa  115  1.9999999999999998e-25  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2507  response regulator receiver protein  43.1 
 
 
121 aa  83.6  8e-16  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_2109  two component, sigma54 specific, transcriptional regulator, Fis family  38.4 
 
 
515 aa  81.6  0.000000000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007794  Saro_1446  multi-sensor hybrid histidine kinase  39.67 
 
 
811 aa  81.6  0.000000000000004  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0142  two component transcriptional regulator, winged helix family  37.5 
 
 
221 aa  79.7  0.00000000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.709604 
 
 
-
 
NC_009523  RoseRS_0520  multi-sensor signal transduction histidine kinase  37.1 
 
 
556 aa  78.6  0.00000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.936608  normal  0.731504 
 
 
-
 
NC_009719  Plav_1998  response regulator receiver protein  45 
 
 
120 aa  78.6  0.00000000000003  Parvibaculum lavamentivorans DS-1  Bacteria  hitchhiker  0.00000230643  normal 
 
 
-
 
NC_009511  Swit_0513  multi-sensor hybrid histidine kinase  39.32 
 
 
803 aa  78.2  0.00000000000003  Sphingomonas wittichii RW1  Bacteria  normal  0.883754  normal 
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  36 
 
 
458 aa  77.8  0.00000000000004  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_1777  two component, sigma54 specific, Fis family transcriptional regulator  33.91 
 
 
465 aa  78.2  0.00000000000004  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2786  two component, sigma54 specific, transcriptional regulator, Fis family  36.59 
 
 
480 aa  77.4  0.00000000000007  Geobacter lovleyi SZ  Bacteria  normal  0.543097  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  33.86 
 
 
473 aa  77  0.00000000000008  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  33.86 
 
 
473 aa  77  0.00000000000008  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_009767  Rcas_1273  multi-sensor signal transduction histidine kinase  37.1 
 
 
556 aa  77  0.00000000000008  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.12815  normal  0.758765 
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  35.04 
 
 
462 aa  77  0.00000000000008  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_009511  Swit_0135  response regulator receiver protein  41.44 
 
 
124 aa  76.3  0.0000000000001  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3634  response regulator receiver sensor signal transduction histidine kinase  37.1 
 
 
379 aa  76.6  0.0000000000001  Geobacter bemidjiensis Bem  Bacteria  normal  0.0261897  n/a   
 
 
-
 
NC_013173  Dbac_2666  two component, sigma54 specific, transcriptional regulator, Fis family  37.4 
 
 
459 aa  76.6  0.0000000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0302  two component transcriptional regulator, winged helix family  35.83 
 
 
221 aa  76.6  0.0000000000001  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  33.86 
 
 
473 aa  76.3  0.0000000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3739  response regulator receiver sensor signal transduction histidine kinase  38.4 
 
 
379 aa  76.3  0.0000000000001  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007406  Nwi_0114  Signal transduction histidine kinase  43.52 
 
 
939 aa  76.3  0.0000000000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.153209 
 
 
-
 
NC_009972  Haur_0852  GAF sensor hybrid histidine kinase  34.17 
 
 
1055 aa  75.9  0.0000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3564  response regulator receiver modulated metal dependent phosphohydrolase  34.68 
 
 
492 aa  75.9  0.0000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3738  response regulator receiver modulated metal dependent phosphohydrolase  38.05 
 
 
384 aa  75.5  0.0000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5905  two component transcriptional regulator, winged helix family  32.8 
 
 
237 aa  75.5  0.0000000000003  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_1405  two component, sigma54 specific, transcriptional regulator, Fis family  36.36 
 
 
478 aa  75.1  0.0000000000003  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000117702 
 
 
-
 
NC_007760  Adeh_0504  two component, sigma54 specific, Fis family transcriptional regulator  38.39 
 
 
443 aa  74.7  0.0000000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2805  two component, sigma54 specific, transcriptional regulator, Fis family  36.36 
 
 
478 aa  75.5  0.0000000000003  Geobacter bemidjiensis Bem  Bacteria  normal  0.228775  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3138  two component transcriptional regulator  35.48 
 
 
224 aa  74.7  0.0000000000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1278  two component, sigma54 specific, Fis family transcriptional regulator  38.14 
 
 
452 aa  74.7  0.0000000000004  Opitutus terrae PB90-1  Bacteria  normal  0.902353  normal 
 
 
-
 
NC_002939  GSU1495  sigma-54 dependent DNA-binding response regulator  33.33 
 
 
458 aa  73.9  0.0000000000007  Geobacter sulfurreducens PCA  Bacteria  normal  0.301103  n/a   
 
 
-
 
NC_010338  Caul_0863  response regulator receiver protein  44.83 
 
 
118 aa  73.6  0.0000000000009  Caulobacter sp. K31  Bacteria  normal  normal  0.385882 
 
 
-
 
NC_009483  Gura_0224  response regulator receiver sensor signal transduction histidine kinase  37.07 
 
 
379 aa  73.6  0.0000000000009  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0202  response regulator receiver sensor signal transduction histidine kinase  36 
 
 
374 aa  73.2  0.000000000001  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_013411  GYMC61_1696  two component transcriptional regulator, winged helix family  35 
 
 
224 aa  73.2  0.000000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011145  AnaeK_0537  two component, sigma54 specific, transcriptional regulator, Fis family  37.5 
 
 
446 aa  73.2  0.000000000001  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3222  two component, sigma54 specific, transcriptional regulator, Fis family  38.4 
 
 
447 aa  73.2  0.000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0905113 
 
 
-
 
NC_007912  Sde_3108  response regulator receiver domain-containing protein  39.67 
 
 
120 aa  72.8  0.000000000001  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0378  two component transcriptional regulator  34.35 
 
 
234 aa  72.8  0.000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0533  two component, sigma54 specific, transcriptional regulator, Fis family  37.5 
 
 
443 aa  73.2  0.000000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.141325  n/a   
 
 
-
 
NC_009767  Rcas_0845  response regulator receiver modulated metal dependent phosphohydrolase  38.28 
 
 
508 aa  72.4  0.000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.903712  hitchhiker  0.00198769 
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  32.28 
 
 
470 aa  72.8  0.000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_005945  BAS3613  lantibiotic biosynthesis DNA-binding response regulator  34.65 
 
 
220 aa  72.4  0.000000000002  Bacillus anthracis str. Sterne  Bacteria  normal  0.127001  n/a   
 
 
-
 
NC_007335  PMN2A_1500  two component transcriptional regulator  35.9 
 
 
248 aa  72  0.000000000002  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2145  two component signal transduction response regulator  32 
 
 
492 aa  72.4  0.000000000002  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_3900  lantibiotic biosynthesis DNA-binding response regulator  34.65 
 
 
220 aa  72.4  0.000000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1727  periplasmic sensor hybrid histidine kinase  37.93 
 
 
793 aa  72.8  0.000000000002  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_5379  DNA-binding response regulator  33.6 
 
 
223 aa  71.6  0.000000000003  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1453  two component transcriptional regulator  37.29 
 
 
244 aa  72  0.000000000003  Synechococcus elongatus PCC 7942  Bacteria  normal  0.952418  normal  0.0249242 
 
 
-
 
NC_013501  Rmar_0987  two component transcriptional regulator, winged helix family  34.4 
 
 
233 aa  72  0.000000000003  Rhodothermus marinus DSM 4252  Bacteria  normal  0.195539  n/a   
 
 
-
 
NC_002939  GSU0149  sensor histidine kinase/response regulator  35.29 
 
 
371 aa  71.6  0.000000000004  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4944  DNA-binding response regulator  33.6 
 
 
223 aa  71.6  0.000000000004  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0109954  n/a   
 
 
-
 
NC_006274  BCZK4959  DNA-binding response regulator  33.6 
 
 
223 aa  71.6  0.000000000004  Bacillus cereus E33L  Bacteria  hitchhiker  0.000160223  n/a   
 
 
-
 
NC_009675  Anae109_2379  two component, sigma54 specific, Fis family transcriptional regulator  39.82 
 
 
446 aa  71.2  0.000000000004  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.373235  normal  0.0399931 
 
 
-
 
NC_011773  BCAH820_5353  DNA-binding response regulator  33.6 
 
 
223 aa  71.6  0.000000000004  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_3603  response regulator receiver protein  29.46 
 
 
131 aa  71.2  0.000000000004  Geobacter lovleyi SZ  Bacteria  normal  0.656399  n/a   
 
 
-
 
NC_011726  PCC8801_2302  two component transcriptional regulator, winged helix family  36.44 
 
 
243 aa  71.2  0.000000000004  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013440  Hoch_0268  two component transcriptional regulator, winged helix family  37.82 
 
 
227 aa  71.2  0.000000000004  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.509377 
 
 
-
 
NC_011726  PCC8801_4349  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  38.4 
 
 
1514 aa  71.2  0.000000000004  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008819  NATL1_02061  two-component response regulator  35.9 
 
 
248 aa  71.6  0.000000000004  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal  0.540525 
 
 
-
 
NC_013161  Cyan8802_2353  two component transcriptional regulator, winged helix family  36.44 
 
 
243 aa  71.2  0.000000000004  Cyanothece sp. PCC 8802  Bacteria  normal  0.0794558  normal 
 
 
-
 
NC_011772  BCG9842_B3993  DNA-binding response regulator  35.59 
 
 
223 aa  70.9  0.000000000005  Bacillus cereus G9842  Bacteria  normal  normal  0.910988 
 
 
-
 
NC_011884  Cyan7425_1115  two component transcriptional regulator, winged helix family  34.75 
 
 
243 aa  70.9  0.000000000005  Cyanothece sp. PCC 7425  Bacteria  normal  0.0950226  normal 
 
 
-
 
NC_011729  PCC7424_4207  two component transcriptional regulator, winged helix family  34.75 
 
 
247 aa  70.9  0.000000000005  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009831  Ssed_2316  response regulator receiver protein  36.04 
 
 
226 aa  71.2  0.000000000005  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.00000147543  hitchhiker  0.000888492 
 
 
-
 
NC_013161  Cyan8802_4411  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  38.4 
 
 
1514 aa  71.2  0.000000000005  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0203527 
 
 
-
 
NC_008254  Meso_2750  response regulator receiver protein  38.89 
 
 
120 aa  70.9  0.000000000005  Chelativorans sp. BNC1  Bacteria  hitchhiker  0.000684047  n/a   
 
 
-
 
NC_008312  Tery_0954  two component transcriptional regulator  34.75 
 
 
243 aa  71.2  0.000000000005  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0817018 
 
 
-
 
NC_011725  BCB4264_A1351  DNA-binding response regulator  35.59 
 
 
223 aa  71.2  0.000000000005  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0878  integral membrane sensor hybrid histidine kinase  40.74 
 
 
754 aa  70.9  0.000000000006  Methylobacterium sp. 4-46  Bacteria  normal  0.307069  normal 
 
 
-
 
NC_005945  BAS1213  DNA-binding response regulator  35.59 
 
 
223 aa  70.9  0.000000000006  Bacillus anthracis str. Sterne  Bacteria  normal  0.203275  n/a   
 
 
-
 
NC_011831  Cagg_3302  two component transcriptional regulator, winged helix family  37.82 
 
 
231 aa  70.9  0.000000000006  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.000343135 
 
 
-
 
NC_005957  BT9727_1191  response regulator  35.59 
 
 
223 aa  70.9  0.000000000006  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1193  response regulator  35.59 
 
 
223 aa  70.9  0.000000000006  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1389  DNA-binding response regulator  35.59 
 
 
223 aa  70.9  0.000000000006  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_1312  DNA-binding response regulator  35.59 
 
 
223 aa  70.9  0.000000000006  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5433  DNA-binding response regulator  33.6 
 
 
223 aa  70.9  0.000000000006  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_1773  DNA-binding response regulator  29.17 
 
 
224 aa  70.9  0.000000000006  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1267  response regulator receiver sensor signal transduction histidine kinase  36.36 
 
 
542 aa  70.5  0.000000000007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  30.71 
 
 
231 aa  70.5  0.000000000007  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_008531  LEUM_1950  DNA-binding response regulator  34.96 
 
 
235 aa  70.5  0.000000000007  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.100456  n/a   
 
 
-
 
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