| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan8802_4411 |
|---|
| Symbol | |
|---|
| ID | 8393763 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 8802 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013161 |
|---|
| Strand | - |
|---|
| Start bp | 4551296 |
|---|
| End bp | 4555840 |
|---|
| Gene Length | 4545 bp |
|---|
| Protein Length | 1514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644982320 |
|---|
| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_003140031 |
|---|
| Protein GI | 257062143 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0203527 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACAAAAC CCATTCAATC AAAAATATTA GACAATTTGT TTGCTGGAGA GGGAGAAATG
TCTCTGCTCA TGAGAGCTCA CGACTGGAAC AACACCCCCC TCGGTCCCGT AGAAACATGG
CCACAAAGTC TGCGTACCAC CGTTAGCATT CTGCTCAATT CCCGTTATCC TATGTTTACC
TTTTGGGGGA CAAAACTGAT CAACCTCTAC AATGACAGTT ATCGTCTCAT TCTAGGAGAC
AAGCACCCTT GGGCCTTGGG ACAATCTGGA CCTGAAATTT GGTCAGAAAT TTGGGATTCC
ATTGGCCCGA TGGTGGATCA GGCCGTTAGT ACCGGCCAAG CCACTTGGTC AGACAATTTA
CCCCTATTTC CCAACCGCAA AGGCTATTTA GAAGAAACCT TTTTCACCTT CTCCTATAGC
CCAGTACGGG ACGAAACCGG AAATATCGGG GGGATGTTTT GTGCTTGCAC AGAAACCACC
AAACAGGTTT TAGGCGATCG CCGTTTACAT ACCTTACGAG ACTTAGCAGC CTGTACAGGA
GAAGCCGAAA CCACCGAAAA AGCTTGTCAA TTAGCCATGG CCACCCTAGG CAACAATGCC
GCCGATGTTC CCTTTGCTCT CTTGTATCTC TTGAATCAGG CCGGAACCGA AGCCCATCTT
GTGGCAACCA CAGGACTAGA ACCAGGAACC ACCGCCAGTC CTAAAAAGGT TGAACTTTTT
GACACTGGGG AGCGACCTTG GCCTCTAGCG GAAGTCGCCC ATACCCCCCA AACTCAGCGT
ATAAGGGATG TCATTGAGCG AGTTGGCCAA CTCAAGGTAG GACTCTGGCC AGACCCCCCT
CACACAGCCC TAATATTACC CGTGGCTTCC CCCGGACAAA CCCGTCCCAC AGGATTACTG
ATTACCGGGA TTAGCCCTCG TTTGTCCTTA GATGACGATT ATCAAGGGTT TTTAGAATTA
GTTGCCGGCC AGGTTGCCAC CATTATTGCC GATGTCGGTG CTTACGAAGC TGCCAAACAA
CGCGCCGAAG CTTTAGCCGA AATCGATCGC GCCAAAACTG TCTTTTTTAG CAACGTCTCC
CATGAGTTCC GCACCCCCCT AACCCTAATG TTAGCCCCCC TAGAAGATTT GCTGGCCGAT
GGGGCTGACC CCCTATCCCC TACCCAACGC GATCGCCTAG AAATTGCCCA ACGCAACAGC
CTAAGATTAC TGAAACTCGT CAACACATTA CTGGACTTTT CTCGCATTGA AGCCGGACGG
ACTCAAGCGT GTTATCAGCT AACAGACATC GCCACACTCA CCAAGGAACT CGCTAGTAGC
TTTCGATCGC TGATGGAACG AGCCGGACTG ACACTCATCG TCAACTGCCC ACCTCTGGGT
GAGTCGGTCT ATGTTGATCA AGAAATGTGG GAAAAGATCG TCCTCAATCT CCTATCAAAT
GCCTTTAAAT ATACCTTAGC GGGTAGTATC ACCGTAAAAG TTCAGGGATT TGATGACCAT
ATTGAGCTAT CTGTCATTGA CACAGGTATT GGTATTCCAG AGGCCGATCT GCCCCATCTG
TTTGAACGCT TCCATCGGGT TAAAGGCGCA CAGGGTCGTA GTTTTGAAGG CTCAGGCATT
GGGTTATCGC TGGTTCAAGA ATTGGTTAAA CTTCATGGCG GCCAGATCAA GGTCAACAGC
AGCCTTGGTC AAGGCAGTTG TTTTACGATT TGTCTTCCTA GGGGTTGTAA CCATTTGCCC
CACGAAAATC TCAAAGGTGC TCCCAAAGCG ACGCATGATA CGCCCAGATC CATGAGCCAG
CAAATCAGTA CCTTTGTTGA AGAAGCCTCT CGCTGGCTTT CAGGGGATAT TAAGACCGTA
GAATCCTTTA CGCACCAGTC CTTAACAGAG GTTTCTCGTG GTCAAACCGT CAAGGAATCT
CCAAGAGATC CCCTTCGCGG TGCGCGGATT CTCCTCGCTG ATGACAATGC GGATATGCGA
GACTATGTTA AACGACTATT ACAAGATCAC TATCTCGTTG AAACCGTAGC CGATGGAGTC
GCTGCCCTAG AATCGATCCA ACAGCAGCGT CCTGACCTTT TGTTAACCGA TATCATGATG
CCCCGTCTCA ACGGGTTGGC TTTGCTGCAA CAACTCCGAT CTTCCTTAAG CACCCAAGAT
CTACCGATTA TTCTCCTGTC AGCCCGTGCG GGGGAAGAAT CTCGCATTGA AGGACTACAA
GCAAAAGCTG ATGATTATCT GATTAAACCC TTTTCCTCCC GTGAACTGTT AGCGAGGGTG
GAAGCGTGTT TAAAAATGGC TCAAATTCGC CAAGAAGCCG CCGCACGAGA ACAGACGCTG
CGTCTGGCAA CGGAAAAAGC ACAACAAGCC GTAGCGGCTA CCACAGAAAA GCTCAATCGT
ATCCTCGCTA CGATCAGCGA TGGATTTATC TTACTAGACC CAGAGTGGGT CATAACTTAT
CACAATACGG CTACAACCAA GCTCTTTCCT GCCAAATCCC ATCCCCTAGG GCTCGGAAAA
ACGTTATGGG AAGTCTGGCC GAGTTGGGTT AACACGGATC TTGAGCATCG CCTCCGCTAT
GCCATGACTG AGCAGGTTTC TCAGCAATGT GAGTATCATT GTGCTAGTTC TTTGACCGAA
GAGTTATGGC TAGAAATCTA CGCTTATTCC TTTGAAGAGG GGTTAGGGAT TTTCTTACAC
GATATTAGCG ATCGCAAACG CAGCGAAGCC GAACGCCACA AAGCGGAAAT TGCCCTGAAA
CAATACAGTG AACAACTAGA ACTTCGGGTA GCCGAACGCA CGGCCAAACT CTCCCAGACA
ATTGCTGAGT TGCATCAGGT TGAAGAAATC TTAAGAGGCA AAGAAACCCA TTATCGACAA
GCTTTGAATT TGACCAATAC CGGGTCATGG GAGTTTGATC TCGCCTCCGA GAAGGTATTT
TGGTCAGAAC AAGTAGAAAT CATCTGGGGC ATGAAACCAG GGACATTTCG CGGCGAGTTT
GACCAAGTTA AAGCGGGGAT TCATCCGCAA GATTTTGACC TTTGGCAGCA AAATGTTCAG
GCTTGTATTG AGGAGGGCAA AGAACACAAT CTTGAGTTTC GCGTCGTACA TCCAGATGGC
TCGATCCATT GGGTTCAAGC GATCGGCAAT GCTGAATATG ACTCCCAAGG CCATCCCATT
CGTTTGCGCG GGCTAATCAT GGACGTTACC GAACGTAAAA CCTCTCAAGA ACGGCTCAAC
TATATGGCTC ATCACGATCA CCTGACGGAT TTACCCAATC GTTTGCTCTT GAAAGCCCGA
TTAGATCAGA GTATTCAACA AGCAACCCGT AAGCGGACTA AGTTAGCGGT CGTTTTTATC
GATTTGGATC GGTTTAAGCA CATTAACGAT AGCATGGGTC ACGCTGCGGG CGATGCCTTG
TTGCAACAGT TAGCCCAACG TCTTCGCCAA GTCTTACGCA GCAGTGATAC GGTAGCTCGG
ATTAGTGGGG ATGAGTTTGT GGCTGTCTTA GAAGACATTG AGGATATTCA GCACGCGAGT
ATGGTGGTAG CGAAACTCAT GACGGTTTTT GAGGAACCCT TCCCGTTAGA AGGCCAAATC
ATTCACATGA CCTCTAGCAT GGGATTGAGC CTATTTCCCG ATGATGGGAT GGATACAGCG
ATTCTTTTAC GCAATGCCGA TTCAGCCATG TATCGCGCCA AGGAAGAAGG GCGCAATACC
TACTGTTTCT ATGCAGAGGA AATGACCTCA GCAGCTTTTG AGTATGTGTT GTTTGAAAAT
GCTCTACGGG GTGCGTTGAA GCGAAACGAG TTCTACTTAG TTTACCAACC GCAAATCGAT
CTGTCTTCCC ATCGTTGGGT CGGGATGGAA GTATTATTAC GCTGGCATCA TCCGGAGTTA
GGCATCGTTT CTCCAGCCCA GTTTATTCCC ATTGCTGAAC AAAGTGGACT GATTCAAGAG
ATTGGGACTT GGGTCTTATA TCGGGCTTGT TGTCAGGCTA AAACATGGTT AGATCAAGGG
ATTGATTTTG GACACATTGC CGTTAATGTG GCTGCCCCTC AAATTCAACA AAATAATTTT
GTTCATCTGG TTCAAGATGC TTTAGACAGC AGTGGTTTAC CCTCTCCCCA TTTAGAGCTA
GAGTTAACAG AGGGATTAGT GATGCACCAG ACGGAAGACA GAATTAAACA ACTCGAAGTC
TTGCAGGATA TGGGTATTTA TCTAGCGATC GATGATTTTG GTACGGGTTA TTCATCTTTG
AGTTATTTGA AACGATTGCC AATCAATAAA CTGAAAATTG ATAAGTCTTT TGTTCGAGAT
ATTCCCCATG ATACCAATGA CATGGCCATA TCAGAGGCAG TGATCGCTTT GGGTAAAGCC
CTCAATTTGC GAATTATTGC TGAAGGGGTA GAACAGGAAA TTCAAGCAAC TTTTTTGAGA
GAGAAAGGAT GCCATGAAGC TCAGGGCTAC CTTTATAGTA AACCCCTACC CCCAGAGGAA
ATTACTCAAC TTTTTGCAGA AGTCAGCCAA TGGCAACAAG CATAG
|
|---|
| Protein sequence | MTKPIQSKIL DNLFAGEGEM SLLMRAHDWN NTPLGPVETW PQSLRTTVSI LLNSRYPMFT
FWGTKLINLY NDSYRLILGD KHPWALGQSG PEIWSEIWDS IGPMVDQAVS TGQATWSDNL
PLFPNRKGYL EETFFTFSYS PVRDETGNIG GMFCACTETT KQVLGDRRLH TLRDLAACTG
EAETTEKACQ LAMATLGNNA ADVPFALLYL LNQAGTEAHL VATTGLEPGT TASPKKVELF
DTGERPWPLA EVAHTPQTQR IRDVIERVGQ LKVGLWPDPP HTALILPVAS PGQTRPTGLL
ITGISPRLSL DDDYQGFLEL VAGQVATIIA DVGAYEAAKQ RAEALAEIDR AKTVFFSNVS
HEFRTPLTLM LAPLEDLLAD GADPLSPTQR DRLEIAQRNS LRLLKLVNTL LDFSRIEAGR
TQACYQLTDI ATLTKELASS FRSLMERAGL TLIVNCPPLG ESVYVDQEMW EKIVLNLLSN
AFKYTLAGSI TVKVQGFDDH IELSVIDTGI GIPEADLPHL FERFHRVKGA QGRSFEGSGI
GLSLVQELVK LHGGQIKVNS SLGQGSCFTI CLPRGCNHLP HENLKGAPKA THDTPRSMSQ
QISTFVEEAS RWLSGDIKTV ESFTHQSLTE VSRGQTVKES PRDPLRGARI LLADDNADMR
DYVKRLLQDH YLVETVADGV AALESIQQQR PDLLLTDIMM PRLNGLALLQ QLRSSLSTQD
LPIILLSARA GEESRIEGLQ AKADDYLIKP FSSRELLARV EACLKMAQIR QEAAAREQTL
RLATEKAQQA VAATTEKLNR ILATISDGFI LLDPEWVITY HNTATTKLFP AKSHPLGLGK
TLWEVWPSWV NTDLEHRLRY AMTEQVSQQC EYHCASSLTE ELWLEIYAYS FEEGLGIFLH
DISDRKRSEA ERHKAEIALK QYSEQLELRV AERTAKLSQT IAELHQVEEI LRGKETHYRQ
ALNLTNTGSW EFDLASEKVF WSEQVEIIWG MKPGTFRGEF DQVKAGIHPQ DFDLWQQNVQ
ACIEEGKEHN LEFRVVHPDG SIHWVQAIGN AEYDSQGHPI RLRGLIMDVT ERKTSQERLN
YMAHHDHLTD LPNRLLLKAR LDQSIQQATR KRTKLAVVFI DLDRFKHIND SMGHAAGDAL
LQQLAQRLRQ VLRSSDTVAR ISGDEFVAVL EDIEDIQHAS MVVAKLMTVF EEPFPLEGQI
IHMTSSMGLS LFPDDGMDTA ILLRNADSAM YRAKEEGRNT YCFYAEEMTS AAFEYVLFEN
ALRGALKRNE FYLVYQPQID LSSHRWVGME VLLRWHHPEL GIVSPAQFIP IAEQSGLIQE
IGTWVLYRAC CQAKTWLDQG IDFGHIAVNV AAPQIQQNNF VHLVQDALDS SGLPSPHLEL
ELTEGLVMHQ TEDRIKQLEV LQDMGIYLAI DDFGTGYSSL SYLKRLPINK LKIDKSFVRD
IPHDTNDMAI SEAVIALGKA LNLRIIAEGV EQEIQATFLR EKGCHEAQGY LYSKPLPPEE
ITQLFAEVSQ WQQA
|
|---|
| |