Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1727 |
Symbol | |
ID | 4081189 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1816029 |
End bp | 1818410 |
Gene Length | 2382 bp |
Protein Length | 793 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 638010102 |
Product | periplasmic sensor hybrid histidine kinase |
Protein accession | YP_616773 |
Protein GI | 103487212 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCCTG CGGCACTGTC GCGGCTCGAT GTCGCCTTGC TCGCGGCGCT CGCGCTCGTC TCGGCCGTGC TGCTGTTCTG GGCCACGGGC AGCAAGATCC TTGCCGCGGG CTTTGTTGCG GGACTTGCGG TGGCCGCCGG CGGCGTGCTG CTGGTGCGGC GCCTGTTTCC CACCGCGGCG GGAGGCGAAG CCGCGACACC TGACTGGACC ATGCTGCGCC AGGCCGTCAA TCACGACGAT GTCGCGATTG CCGTCACCGA CCGCACGGGC CGCATGGTTT GCGCCAACGA CCTGTTCGCC ACCTGGATGG GCGGTTTTGT CACACCCCCC GGCCTGCCGG TCGACGGACG CGGCGCCGAA CTGCTCAAAA ACGCCGGGCG GACGGCGTGG CGCGATGGCG AGGGACGCGC CGATGACCTT GCGATCGGCC CGCTGCGATT GCGCGCGCAG GTGATGCGCA CGGGGCAGGC GGAGGATTAT CTGGTCTGGC GCTTTGCCGC GATCGAACGG TTCGATCTGG TCGCCGAACT CACGCGGCAT CTGGGCGGTC CGGCGGGCCG GACGCTGGGC CATGCCGGGG TCATGGCGGC GCTGGTCAAC AGCGAAGGCC GCCTTCGCGC TGCCAATGAG GCGTTTCTGC TGCGCGCACT CGGCGAGGAG GATGCCCGCC ATTACGCCGG GCGCGATGTT GCGGCGATGT TGCGTATCGA CGATGGCGGC GCCCTTTATT TTGCGCGCGA GGGCGACCGC GCGACGCCGG TGCGGCTGAT CCAGATCCCG CTCGTTTCGT CCGACAGCAA TTCGCCAGTG CTGCTCGCGA TGCTCGACGA GGAGATGGGG CCGGCCGACC GCGGCACCGC GCAAACCTAT GTCGAAACCT TGCTTTCGCT GCTGCCCTTC GGGCTGGCGC TCGTCGACCG CGACGGACGC TTCCTTTACA TGAATCGCGC TTTCAAGCGT GCTGCCAACC TTCCTGAAGC CAAGATGCCG CGTTATCCGG GCGACATCGT CGTCGGCGAG GACAAGGGGC CGCTGGCCGA CATGATCCGT CGTCACAGCA GCGGGCAACA GGTCGGCGGC GACCTGTCGA TCCGCTTGGC TGGGCAGAGC GGCGATCCGG TGTCGATGCG CGTTGTCGGG GTGCGGGGCC TCGGCGAAGC GGCGGTGCTT TTGAGTCTCA AGGATTCGAG CGAGGAATCG CGCCTCAAGC GCCAGGTCGC GCAGGCGTCG AAGATGCAGG CGGTGGGCCA GCTTGCGGGC GGTGTCGCGC ATGATTTCAA CAATATCCTG ACCGCGGTGC TCGGTGCGTG CGACCTGATG CTGATGCGGC ATACGCCGGG CGACAGCGAC TATGACGACA TCCAGCAGAT TCGCAGCAAC GCCAATCGCG CCGCCAGCCT GACGCGGCAA TTGCTTGCCT TTTCGCGGCA ACAGACGCTG CGACCGCAGA TATTGCAACT GCCCGACGTG ATTTCGGAGG TGTCGCATTT GTTGAAACGC CTGATCGGCG AGACGGTGCA GCTTTCGGTG CATCACGGTC GCGGCCTCGG GGCGGTGCGC GCCGACCCCG GCCAGCTCGA ACAGGTGATC ATCAACCTGG CCGTCAACGC GCGCGACGCG ATGCCCGGCG GCGGGACGCT GACGATCGAA ACCTATCCGG TGTCGGCCAC CGATGTGCGC CAGATGGGCA ATGAGTTCAT GCCACCCGCC GATTATTGCG CGCTGAAGGT CAGCGATACG GGCACCGGCA TTCCCGCCGA CATATTGCCC AAGATTTTCG AACCCTTTTT CACGACCAAG GATGTGGGCA AAGGGACGGG GCTCGGCCTG TCGACCGTTT ATGGCATCAT CAAGCAGTCG GCGGGCTTCA TCTTTGCCGA CAGCAAGCCG GGAGAGGGCA CCAGCTTTAC CATCTATCTG CCCGTCCACC GCGTCGCGGG TGACGCCCCG GCGGCGCCGC AGCCGCCCGC CAAGCCCAAA AAGAGCCAGT GGGGCAGCGG GACGATCCTG CTCGTCGAAG ACGAGGACAT GGTGCGTGCG GTCGCGGAAC GCGCCCTGGC CCGCGCGGGT TATACGGTCG TCACCGCCGC GCAGGGCGAG GAAGGACTCG AACGTTTTGC CGGGATGGAG AAGGTCGATT TGGTCATCAG CGATGTCGTG ATGCCGACGA TGGACGGGTC GGCGATGGTG CGCGCGATGC GCGCCAGGCG CCCCGGCCTG CCGGTGCTGT TCATGTCGGG CTATGCCGAG GAACAGCTGC GCCAGTCGAT CGACATCGAC AATGTGTCTT TCCTGCCCAA ACCCTTCTCG GTCGCGCAGC TGGCCGAGGC GACCTCGGCG GCGCTGGACG AGGCCGCGCA TCGCGGGGGC CGGGATGGCT GA
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Protein sequence | MPPAALSRLD VALLAALALV SAVLLFWATG SKILAAGFVA GLAVAAGGVL LVRRLFPTAA GGEAATPDWT MLRQAVNHDD VAIAVTDRTG RMVCANDLFA TWMGGFVTPP GLPVDGRGAE LLKNAGRTAW RDGEGRADDL AIGPLRLRAQ VMRTGQAEDY LVWRFAAIER FDLVAELTRH LGGPAGRTLG HAGVMAALVN SEGRLRAANE AFLLRALGEE DARHYAGRDV AAMLRIDDGG ALYFAREGDR ATPVRLIQIP LVSSDSNSPV LLAMLDEEMG PADRGTAQTY VETLLSLLPF GLALVDRDGR FLYMNRAFKR AANLPEAKMP RYPGDIVVGE DKGPLADMIR RHSSGQQVGG DLSIRLAGQS GDPVSMRVVG VRGLGEAAVL LSLKDSSEES RLKRQVAQAS KMQAVGQLAG GVAHDFNNIL TAVLGACDLM LMRHTPGDSD YDDIQQIRSN ANRAASLTRQ LLAFSRQQTL RPQILQLPDV ISEVSHLLKR LIGETVQLSV HHGRGLGAVR ADPGQLEQVI INLAVNARDA MPGGGTLTIE TYPVSATDVR QMGNEFMPPA DYCALKVSDT GTGIPADILP KIFEPFFTTK DVGKGTGLGL STVYGIIKQS AGFIFADSKP GEGTSFTIYL PVHRVAGDAP AAPQPPAKPK KSQWGSGTIL LVEDEDMVRA VAERALARAG YTVVTAAQGE EGLERFAGME KVDLVISDVV MPTMDGSAMV RAMRARRPGL PVLFMSGYAE EQLRQSIDID NVSFLPKPFS VAQLAEATSA ALDEAAHRGG RDG
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