Gene Swit_0513 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_0513 
Symbol 
ID5200487 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp553697 
End bp556108 
Gene Length2412 bp 
Protein Length803 aa 
Translation table11 
GC content69% 
IMG OID640580054 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_001261019 
Protein GI148553437 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system
[COG4753] Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.883754 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCACGC TGTTCTCCGC CGCCCCGATC TCCGCGAGCT CGGGCCGCTT CGCGCTCAAC 
CTGCTGCTGG CGGTGCTCGC CTTCATCGCC TCGATCGGCA TGGCCGGGAT GATCTGGGGC
GCGACCGACA ATCTGCTGGT CGCCGGCCTG TTCATGCTCG CCTTCTGCCT GGGGATCGGC
ATGATCCTGC TGGTGGCGAC GGTCCGCGCG CGAATCCACA GCCGGCCCGT ACGGCTGCTC
GACACCGAAC TGCTGCTCGG CACGATCGAG GATTCGGCGT CCGGTGTCGC GATCACCGGA
CCGGGTGGCG AGCTGCTCTG CGCCAATCGC CAATATGAGA CCTGGTTCGG CGGGCTGCCG
ACGCCGCCGG GCCTGCCGCT CGACGCGGCT ACGCGGATGC AGCTTTCCTC GGCGGCGCTG
GCGGCGCGAC GCGACGGCCT CGCCCAGATC GCCGGGTTGT CGACCGATCG CGGCCTGATC
GACGTGATCG TCCGGCGCGC GGGCAATGGC GACGATCACC TCGTCTGGCG CTTCCACCGG
TCGAGCGAAT TCGACGGCCT GGGCGACATC ATGCGGATGC TGGGCAGCGA GATCGGCCGG
CGGATCGGCA GCGCGGGGGT GATGACCGCG CTGGTCGACG GCAATGGCAT CGGCCTCGTC
GCCAATCGCG TCTTCCTGCA GCGCGCGCTG GGCTCGGCCG ACGCGCCGAG CGCGGGCTGG
GCCTTTGCCG AGCTGCTGCG CAGCGACGGC GACATGATCC GGCTCGCCGC CGATCCCGCC
ACCGCCGATC CGGTGCGCCT GATCCAGATA CCCCTCGACA ACCAGGGCGG GGCCGACGCC
ACGCTGTTCC TGCTGCTCGA CGAGCCGACC GGCCATGGCG CGGAGGCGCG GGCGGTGGCG
ACCGGCGATC TCCACGCGCT GCTCGGCATG CTGCCGATCG GCCTGGCCGT GGCCGAGCGC
GACGGCCGCG TCCTGTTCAT GAACAGTTCG TTCCGCCGCG CCGCCGGGCT GGGGCCGGAG
GCGACGATCG TCTATCCGAG CGACCTCGTC GTCGAGGAGG ACAAGGCCGC CGTCTCCGAC
GCGGTGCGGC GCTTCTCCGC CGGGCGCGGA TCGGCGAGCG ACCTGTCGGT GCGGCTGAAG
GAGCGGCCCG AGGAGAATGT CTCGCTGACG ATCGCCGCCG CCAAGGGGCT CGGCAAGGCG
TCGGTGCTGC TCAGCCTCAA GGACAATAGC GAGGAGTCGC GGCTCAAGCG GCAGGTCGCC
CAGGCGATGA AGATGCAGGC GGTCGGCCAG CTCGCCGGCG GCGTCGCGCA CGACTTCAAC
AATATCCTGA CCGCGATCAT CGGCCATTGC GACCTGATGA CGATGCGCCA CATCCCCGGC
GACAGCGACT ATGACGACAT CCAGCAGATC AAGCACAATT CGAACCGCGC GGCGGCGCTG
ACCCGCCAGC TCCTGGCCTT CTCGCGGCAG CAGACGCTGC GCCCGCAGAT CCTGCAGATC
CCCGACGTCA TCTCGGAGAT ATCGAACCTG CTCAACCGGC TGCTGGGCGA GACCGTCCGG
CTCGAGGTCA GCCATGGCCG CAACCTCGGC ACCGTCCGCG CCGATCCGGG GCAGCTCGAG
CAGGTGATCG TCAACCTCGC CGTCAACGCG CGCGACGCGA TGCCCGACGG CGGCATGCTG
ACGATCCACA CCTATGCGGT TTCGCAGGCC GACGTTCGGA GGCTCGGCAT CGAGATCATG
CCGGTGACCG AATATACCGC GATGAAGGTG ACCGACACCG GCAGCGGCAT CTCGGCCGAG
AACCTCAACA AGATCTTCGA GCCCTTCTTC ACCACCAAGG AGGTGGGCAA GGGCACCGGC
CTGGGCCTGT CGACCGTCTA TGGCATCGTC AAGCAGACCG GCGGCTTCAT CTTCGCCGAG
AGCGAGGTGG GGGCGGGGAC GAGCTTCGTC ATCTACCTGC CGGTCCATGA GGCGCCCGCC
AAGGCCGCCG CCGCCCGCGC GCCGGTCAAG GAGGCGAGCA CCGAGCTGTG GGGCACCGGC
ACCATCCTGC TGGTCGAGGA CGAGGCGATG GTGCGCGCCG TCGCCGAGCG GGCGCTGGCG
CGGCAGGGCT ACAAGGTCCT CACCGCCACC AACGGCGAGG AGGGGCTGGA GATATTGGAA
GCCGGCGAGG AGCCGATCGA CCTCGTCATC TCCGACGTGG TGATGCCGAC GATGGACGGT
CCCTCCATGG CCCGCGCGGC GCGCGAGAAG CGGCCCGACC TGCCGATCAT CTTCATGTCG
GGCTATGCCG AGGAACAGCT CCGCCGCTCG ATCGACCTCG ACAATATCGG CTTCCTGCCC
AAGCCCTTCT CGGTCCAGCA GATCGGCCAG GCCGCGCGGG AGGCGCTCGC GGATCACGCG
CGTCTTGGTT AG
 
Protein sequence
MATLFSAAPI SASSGRFALN LLLAVLAFIA SIGMAGMIWG ATDNLLVAGL FMLAFCLGIG 
MILLVATVRA RIHSRPVRLL DTELLLGTIE DSASGVAITG PGGELLCANR QYETWFGGLP
TPPGLPLDAA TRMQLSSAAL AARRDGLAQI AGLSTDRGLI DVIVRRAGNG DDHLVWRFHR
SSEFDGLGDI MRMLGSEIGR RIGSAGVMTA LVDGNGIGLV ANRVFLQRAL GSADAPSAGW
AFAELLRSDG DMIRLAADPA TADPVRLIQI PLDNQGGADA TLFLLLDEPT GHGAEARAVA
TGDLHALLGM LPIGLAVAER DGRVLFMNSS FRRAAGLGPE ATIVYPSDLV VEEDKAAVSD
AVRRFSAGRG SASDLSVRLK ERPEENVSLT IAAAKGLGKA SVLLSLKDNS EESRLKRQVA
QAMKMQAVGQ LAGGVAHDFN NILTAIIGHC DLMTMRHIPG DSDYDDIQQI KHNSNRAAAL
TRQLLAFSRQ QTLRPQILQI PDVISEISNL LNRLLGETVR LEVSHGRNLG TVRADPGQLE
QVIVNLAVNA RDAMPDGGML TIHTYAVSQA DVRRLGIEIM PVTEYTAMKV TDTGSGISAE
NLNKIFEPFF TTKEVGKGTG LGLSTVYGIV KQTGGFIFAE SEVGAGTSFV IYLPVHEAPA
KAAAARAPVK EASTELWGTG TILLVEDEAM VRAVAERALA RQGYKVLTAT NGEEGLEILE
AGEEPIDLVI SDVVMPTMDG PSMARAAREK RPDLPIIFMS GYAEEQLRRS IDLDNIGFLP
KPFSVQQIGQ AAREALADHA RLG