More than 300 homologs were found in PanDaTox collection
for query gene Rleg_3862 on replicon NC_012850
Organism: Rhizobium leguminosarum bv. trifolii WSM1325



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012850  Rleg_3862  response regulator receiver protein  100 
 
 
119 aa  232  2.0000000000000002e-60  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.762525  normal  0.105944 
 
 
-
 
NC_011369  Rleg2_3569  response regulator receiver protein  96.64 
 
 
119 aa  224  3e-58  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.146165 
 
 
-
 
NC_011989  Avi_4023  two component response regulator  84.03 
 
 
119 aa  194  3e-49  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2540  response regulator receiver protein  79.83 
 
 
119 aa  170  5.999999999999999e-42  Sinorhizobium medicae WSM419  Bacteria  normal  0.676292  normal 
 
 
-
 
NC_007406  Nwi_0574  response regulator receiver  59.17 
 
 
130 aa  132  9.999999999999999e-31  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.4385  normal 
 
 
-
 
NC_007964  Nham_0665  response regulator receiver domain-containing protein  60.33 
 
 
127 aa  133  9.999999999999999e-31  Nitrobacter hamburgensis X14  Bacteria  normal  0.709306  n/a   
 
 
-
 
NC_011004  Rpal_5220  response regulator receiver protein  58.68 
 
 
126 aa  131  3e-30  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.472283  n/a   
 
 
-
 
NC_010505  Mrad2831_3997  response regulator receiver protein  54.55 
 
 
121 aa  130  7.999999999999999e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0883649 
 
 
-
 
NC_011757  Mchl_3086  response regulator receiver protein  53.72 
 
 
121 aa  129  1.0000000000000001e-29  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.342425  normal 
 
 
-
 
NC_008254  Meso_3094  response regulator receiver protein  54.55 
 
 
121 aa  129  1.0000000000000001e-29  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_2860  response regulator receiver  53.72 
 
 
121 aa  129  1.0000000000000001e-29  Methylobacterium extorquens PA1  Bacteria  normal  0.388237  normal 
 
 
-
 
NC_010725  Mpop_2980  response regulator receiver protein  53.72 
 
 
121 aa  129  1.0000000000000001e-29  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0941  response regulator receiver  57.85 
 
 
125 aa  129  2.0000000000000002e-29  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1174  putative two-component response regulator  54.55 
 
 
126 aa  128  2.0000000000000002e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.289144  normal  0.876478 
 
 
-
 
NC_010511  M446_2198  response regulator receiver protein  52.89 
 
 
127 aa  126  1.0000000000000001e-28  Methylobacterium sp. 4-46  Bacteria  normal  0.16592  normal  0.62826 
 
 
-
 
NC_011894  Mnod_1157  response regulator receiver protein  52.07 
 
 
127 aa  124  4.0000000000000003e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.116971  n/a   
 
 
-
 
NC_007778  RPB_0832  response regulator receiver domain-containing protein  58.41 
 
 
125 aa  124  6e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.155773  normal  0.875827 
 
 
-
 
NC_007925  RPC_4869  response regulator receiver domain-containing protein  57.14 
 
 
123 aa  120  5e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.337506  normal  0.697748 
 
 
-
 
NC_009719  Plav_1598  response regulator receiver protein  50 
 
 
127 aa  105  2e-22  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_2507  response regulator receiver protein  45.45 
 
 
121 aa  95.1  3e-19  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0863  response regulator receiver protein  47.06 
 
 
118 aa  93.2  1e-18  Caulobacter sp. K31  Bacteria  normal  normal  0.385882 
 
 
-
 
NC_007794  Saro_1446  multi-sensor hybrid histidine kinase  42.5 
 
 
811 aa  91.3  4e-18  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1998  response regulator receiver protein  42.02 
 
 
120 aa  87.8  4e-17  Parvibaculum lavamentivorans DS-1  Bacteria  hitchhiker  0.00000230643  normal 
 
 
-
 
NC_007406  Nwi_0114  Signal transduction histidine kinase  44.14 
 
 
939 aa  87.4  6e-17  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.153209 
 
 
-
 
NC_008254  Meso_2750  response regulator receiver protein  41.18 
 
 
120 aa  87  8e-17  Chelativorans sp. BNC1  Bacteria  hitchhiker  0.000684047  n/a   
 
 
-
 
NC_013440  Hoch_3222  two component, sigma54 specific, transcriptional regulator, Fis family  38.98 
 
 
447 aa  85.9  2e-16  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0905113 
 
 
-
 
NC_009668  Oant_4284  response regulator receiver protein  38.66 
 
 
130 aa  85.5  2e-16  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0043  response regulator  38.66 
 
 
120 aa  85.1  3e-16  Brucella suis 1330  Bacteria  normal  0.868286  n/a   
 
 
-
 
NC_009504  BOV_A0040  response regulator  38.66 
 
 
120 aa  85.1  3e-16  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2145  two component signal transduction response regulator  36.52 
 
 
492 aa  84.7  4e-16  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_2816  response regulator receiver protein  36.97 
 
 
120 aa  84  6e-16  Xanthobacter autotrophicus Py2  Bacteria  normal  0.101903  normal  0.104606 
 
 
-
 
NC_011989  Avi_3746  chemotaxis response regulator  38.46 
 
 
121 aa  83.2  0.000000000000001  Agrobacterium vitis S4  Bacteria  normal  0.193057  n/a   
 
 
-
 
NC_008783  BARBAKC583_0612  response regulator  36.97 
 
 
120 aa  83.2  0.000000000000001  Bartonella bacilliformis KC583  Bacteria  normal  0.124392  n/a   
 
 
-
 
NC_007760  Adeh_0504  two component, sigma54 specific, Fis family transcriptional regulator  35.65 
 
 
443 aa  83.2  0.000000000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_5047  two component, sigma54 specific, Fis family transcriptional regulator  36.97 
 
 
387 aa  82.8  0.000000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0897789  n/a   
 
 
-
 
NC_009636  Smed_2719  response regulator receiver protein  38.14 
 
 
120 aa  82  0.000000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.0959171  normal 
 
 
-
 
NC_010581  Bind_3644  response regulator receiver protein  37.29 
 
 
127 aa  82  0.000000000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  hitchhiker  0.00272169  normal  0.799381 
 
 
-
 
NC_007964  Nham_0235  PAS/PAC sensor hybrid histidine kinase  43.24 
 
 
941 aa  82  0.000000000000002  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  37.07 
 
 
462 aa  82.4  0.000000000000002  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_010505  Mrad2831_2189  multi-sensor hybrid histidine kinase  42.72 
 
 
628 aa  82  0.000000000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0671838  normal 
 
 
-
 
NC_007643  Rru_A2820  multi-sensor hybrid histidine kinase / cell cycle control histidine kinase CckA  44.23 
 
 
829 aa  81.6  0.000000000000003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0533  two component, sigma54 specific, transcriptional regulator, Fis family  34.78 
 
 
443 aa  81.6  0.000000000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.141325  n/a   
 
 
-
 
NC_011145  AnaeK_0537  two component, sigma54 specific, transcriptional regulator, Fis family  34.78 
 
 
446 aa  81.6  0.000000000000004  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_1138  Signal transduction histidine kinase  41.53 
 
 
888 aa  80.9  0.000000000000005  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.408537  normal 
 
 
-
 
NC_007925  RPC_0781  response regulator receiver domain-containing protein  36.97 
 
 
119 aa  80.9  0.000000000000005  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.394955 
 
 
-
 
NC_011894  Mnod_5952  response regulator receiver protein  36.75 
 
 
118 aa  80.9  0.000000000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0493294  n/a   
 
 
-
 
NC_010511  M446_5217  response regulator receiver protein  36.75 
 
 
118 aa  80.9  0.000000000000005  Methylobacterium sp. 4-46  Bacteria  normal  0.0686971  normal  0.0287673 
 
 
-
 
NC_009972  Haur_0852  GAF sensor hybrid histidine kinase  38.05 
 
 
1055 aa  80.9  0.000000000000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0976  response regulator receiver protein  36.97 
 
 
119 aa  80.5  0.000000000000007  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.351318  n/a   
 
 
-
 
NC_010814  Glov_2786  two component, sigma54 specific, transcriptional regulator, Fis family  35.85 
 
 
480 aa  80.5  0.000000000000008  Geobacter lovleyi SZ  Bacteria  normal  0.543097  n/a   
 
 
-
 
NC_007778  RPB_4515  response regulator receiver domain-containing protein  36.13 
 
 
119 aa  80.1  0.000000000000009  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.403365  normal  0.643653 
 
 
-
 
NC_007958  RPD_4356  response regulator receiver  36.13 
 
 
119 aa  80.1  0.000000000000009  Rhodopseudomonas palustris BisB5  Bacteria  hitchhiker  0.00220083  normal 
 
 
-
 
NC_007406  Nwi_2946  response regulator receiver  36.13 
 
 
135 aa  79.7  0.00000000000001  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3624  response regulator receiver protein  37.61 
 
 
120 aa  79.7  0.00000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_1143  response regulator receiver domain-containing protein  36.13 
 
 
119 aa  79.3  0.00000000000001  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1335  response regulator receiver protein  38.05 
 
 
125 aa  79.7  0.00000000000001  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.51819  normal  0.0884587 
 
 
-
 
NC_009485  BBta_1391  putative response regulator receiver (CheY-like protein)  36.13 
 
 
119 aa  79.7  0.00000000000001  Bradyrhizobium sp. BTAi1  Bacteria  hitchhiker  0.00446889  normal  0.206531 
 
 
-
 
NC_011369  Rleg2_3325  response regulator receiver protein  37.61 
 
 
120 aa  79.7  0.00000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.745241 
 
 
-
 
NC_010725  Mpop_3474  response regulator receiver protein  36.75 
 
 
118 aa  79.3  0.00000000000002  Methylobacterium populi BJ001  Bacteria  normal  normal  0.790484 
 
 
-
 
NC_011757  Mchl_3600  response regulator receiver protein  36.75 
 
 
118 aa  79.3  0.00000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.11211  normal 
 
 
-
 
NC_010505  Mrad2831_0043  response regulator receiver protein  36.75 
 
 
118 aa  79.3  0.00000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0842812  normal 
 
 
-
 
NC_009675  Anae109_4152  two component, sigma54 specific, Fis family transcriptional regulator  32.76 
 
 
480 aa  79  0.00000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.038607 
 
 
-
 
NC_010172  Mext_3276  response regulator receiver  36.75 
 
 
118 aa  79.3  0.00000000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6438  putative two component, sigma54 specific, transcriptional regulator, Fis family  36.89 
 
 
394 aa  78.6  0.00000000000003  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.00615091  normal  0.383003 
 
 
-
 
NC_009972  Haur_1267  response regulator receiver sensor signal transduction histidine kinase  34.21 
 
 
542 aa  78.2  0.00000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3738  response regulator receiver modulated metal dependent phosphohydrolase  37.38 
 
 
384 aa  78.6  0.00000000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1234  response regulator receiver protein  34.75 
 
 
138 aa  78.6  0.00000000000003  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0344647 
 
 
-
 
NC_007517  Gmet_0202  response regulator receiver sensor signal transduction histidine kinase  37.72 
 
 
374 aa  78.2  0.00000000000004  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_007964  Nham_1398  multi-sensor hybrid histidine kinase  43.81 
 
 
853 aa  78.2  0.00000000000004  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0867  PAS/PAC sensor hybrid histidine kinase  33.91 
 
 
905 aa  78.2  0.00000000000004  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.768776  n/a   
 
 
-
 
NC_011145  AnaeK_0445  two component, sigma54 specific, transcriptional regulator, Fis family  31.9 
 
 
481 aa  77.8  0.00000000000005  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0520  multi-sensor signal transduction histidine kinase  37.07 
 
 
556 aa  77.8  0.00000000000005  Roseiflexus sp. RS-1  Bacteria  normal  0.936608  normal  0.731504 
 
 
-
 
NC_009483  Gura_0224  response regulator receiver sensor signal transduction histidine kinase  37.39 
 
 
379 aa  77.4  0.00000000000006  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1351  two component transcriptional regulator, winged helix family  39.45 
 
 
225 aa  77.4  0.00000000000006  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00188361  unclonable  0.0000000206018 
 
 
-
 
NC_002939  GSU0149  sensor histidine kinase/response regulator  36.75 
 
 
371 aa  77  0.00000000000007  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_0513  multi-sensor hybrid histidine kinase  41.88 
 
 
803 aa  77  0.00000000000008  Sphingomonas wittichii RW1  Bacteria  normal  0.883754  normal 
 
 
-
 
NC_009675  Anae109_2379  two component, sigma54 specific, Fis family transcriptional regulator  35.65 
 
 
446 aa  77  0.00000000000008  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.373235  normal  0.0399931 
 
 
-
 
NC_011891  A2cp1_0446  two component, sigma54 specific, transcriptional regulator, Fis family  31.9 
 
 
481 aa  77  0.00000000000008  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  35.65 
 
 
458 aa  77  0.00000000000008  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_1287  response regulator receiver domain-containing protein  37.61 
 
 
127 aa  77  0.00000000000009  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.442215  n/a   
 
 
-
 
NC_009616  Tmel_0460  response regulator receiver protein  37.07 
 
 
119 aa  76.6  0.0000000000001  Thermosipho melanesiensis BI429  Bacteria  normal  0.903697  n/a   
 
 
-
 
NC_010814  Glov_2158  two component, sigma54 specific, transcriptional regulator, Fis family  40.57 
 
 
453 aa  76.3  0.0000000000001  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0417  two component, sigma54 specific, Fis family transcriptional regulator  31.03 
 
 
474 aa  76.6  0.0000000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.45134  n/a   
 
 
-
 
NC_009720  Xaut_4635  multi-sensor hybrid histidine kinase  36.97 
 
 
857 aa  76.3  0.0000000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  0.576155  normal  0.315346 
 
 
-
 
NC_011831  Cagg_2019  GAF sensor hybrid histidine kinase  33.33 
 
 
1016 aa  76.6  0.0000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.25506  normal 
 
 
-
 
NC_002939  GSU1495  sigma-54 dependent DNA-binding response regulator  35.09 
 
 
458 aa  75.5  0.0000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  0.301103  n/a   
 
 
-
 
NC_002939  GSU1658  response regulator/GGDEF domain-containing protein  35.09 
 
 
458 aa  75.9  0.0000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  0.939598  n/a   
 
 
-
 
NC_007517  Gmet_0961  two component, sigma54 specific, Fis family transcriptional regulator  36.45 
 
 
454 aa  75.9  0.0000000000002  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_008783  BARBAKC583_0853  sensor histidine kinase/reponse regulator  34.75 
 
 
845 aa  76.3  0.0000000000002  Bartonella bacilliformis KC583  Bacteria  decreased coverage  0.00134282  n/a   
 
 
-
 
NC_008554  Sfum_2092  two component, sigma54 specific, Fis family transcriptional regulator  32.76 
 
 
462 aa  75.9  0.0000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.131918 
 
 
-
 
NC_010571  Oter_1278  two component, sigma54 specific, Fis family transcriptional regulator  35.34 
 
 
452 aa  75.1  0.0000000000003  Opitutus terrae PB90-1  Bacteria  normal  0.902353  normal 
 
 
-
 
NC_009523  RoseRS_0338  response regulator receiver modulated metal dependent phosphohydrolase  32.46 
 
 
513 aa  75.1  0.0000000000003  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.102838 
 
 
-
 
NC_007778  RPB_0712  PAS/PAC sensor hybrid histidine kinase  41.03 
 
 
827 aa  75.1  0.0000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  39.32 
 
 
461 aa  74.7  0.0000000000004  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  39.32 
 
 
461 aa  74.7  0.0000000000004  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  39.32 
 
 
461 aa  74.7  0.0000000000004  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_012892  B21_02106  hypothetical protein  39.32 
 
 
461 aa  74.7  0.0000000000004  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  39.32 
 
 
461 aa  74.7  0.0000000000004  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_011004  Rpal_4405  multi-sensor hybrid histidine kinase  41.9 
 
 
880 aa  74.7  0.0000000000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0198095  n/a   
 
 
-
 
NC_009511  Swit_0135  response regulator receiver protein  37.74 
 
 
124 aa  74.7  0.0000000000004  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>