| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4405 |
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| Symbol | |
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| ID | 6412089 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4729917 |
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| End bp | 4732559 |
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| Gene Length | 2643 bp |
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| Protein Length | 880 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642714287 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_001993376 |
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| Protein GI | 192292771 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0198095 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCGTTTCC GGCCGCGATT CAGGCAGTTG GAGCCGCGCC GCCGCGTGCC CGGCGGGCAA
GGGACCGGTT CGGTGACCAT GACCATCAAC GATCAACAAG CTTCGCCCGA GCCGCGTCCG
GCGTCGCCGG AGCCGGCCCG CCGCGGCGGC AGTATTGCGC TGGTGCTGCT GCTGGCCGGC
GCCATCGTCG CCGCCGCCGT GGCATTCATG ACGCTCGGCC GAGCCGGCGC CCAGCCTTAC
ATTCTCGGCC TGCTGGCGCT GCTGGCGATG GTCGGTCTGT TCATGCTGTT CGCGTTCGCG
GCCGGTATCA TCGGCTTCGC CGACCGTGCC GCCGAAGATC CGATCCTGCG GGCGATTCCC
GAAAACGCTT TCGACGGCAT CGCGGTGACC GACGCCGGCG GCCACGTCGT CTATGCCAAC
GCGACCTATC TGGCGCTGAC CGGCGCCGCG ACGATGCAGG ATGTCCGGCC GGTCGAGCGG
GTGTTCATCG GCAATCCCGA CGTCTCCGAG GCGGTGTTCC GGCTGCTCAA GGCGGCGCGC
GAGGGACGGC GGCTGCAGGA GGAAGTGCGG GTCGCCGGCG CCGACGGCAC CCAGGGCCGC
TGGATGCGGC TGCGGGTTCG CCCGCTGGGG ACCAGCAAGC GCGAGGCGCG GCAGACGGTG
TGGTCGATCG CCGACATCAC CCGCGACCGC GAGCGCCAGG AGGACGTGTT CCAGACCCTG
CAGCACGCGA TCGAATATCT CGATCATGCA CCTTGCGGGT TCTTCTCGGT CAATCCGGCC
GGCAACCTCG TCTACGTCAA TGCCACACTG GCCAACTGGC TCGACCACGA CCTCGCCGAG
ATCGGCTCCG GCGGCCTGAA GCTGTCCGAC GTCGTGTCCG GCGACGGCGC TGCGCTGCTG
ACCTCGATCG TGCCCGAGCC GGGCGAGGTG AAGACCGAAG TTTTCGACAT CGACCTGAAA
AAGCGCGGCG GCCAGACCGT GCCGGTGCGG CTGTATCACA AGCTCGCCTT CGGGGCAGAT
GGCACCCCCG GCCCGTCACG CACGCTGGTG ATCAGCCGCG CGCGTGACGA CCGGCTTGAT
CCGCAGCGCG CCGCCGAAAT CCGCTTCATG CGGTTCTTCG ACCAGACCCC GATGGCGATC
GCCACCGTCG ACAAAACGGG GACGGTGGTG CGGGCCAATG CGCGGCTTGC CAAGCTGGCG
CAGAGCCTCG ATCCGGCCGG CGCGGTGGCG TCTAAGTCGA TCCTCGCCGC GGCTTCGGCG
CGCGATCGCG CGGTGCTGGC AGGTGCGATC GAGCAGGCCG CCAAGGGGCA GGCCGACATC
GCCCCGGTCG AAGTGATGCT CGCCAGCGCC AAGGAGCGCT GGGGCCAGTT CTTTGTGACC
GCTGTCAGCG ACGAGACCGA CAACGAAGCG GCGATCGTCC ACATGCTCGA GACCACCGAG
CGCCGCGCGC TGGAGAACCA GGTCAACCAG GCGCAGAAGA TGGACACCAT CGGCCAGCTC
GCCGGTGGCA TCGCGCACGA CTTCAATAAC GTGCTGTCGG CCATCATGAT GGCCAACGAT
TTCCTGCTGA ACGCGCACAA GCCGACCGAT CCGTCGTTCC AGGACATCAT GCAGATCAAG
CAGAACGCCA CCCGCGCCGC GACCTTGGTG CGGCAGCTGC TGGCGTTCTC GCGCAAACAA
ACACTGCGCC CGCAGGTGCT CGATCTCGGC GAGGCGCTGA CCGATATTGA TCGCCTGTTG
AAGCGGCTGA TCGGCGAGAA GATCTCGCTG GAGATGCAGC ACGGCCGCGA TCTGTGGCGC
ACCAAGGCCG ACGTCTCGCA ATTCGAGCAG GTGATCGTCA ATCTCGCCGT CAATGCTCGC
GATGCGATGC CTGACGGCGG CAAGCTGACG ATCCGCACCG CCAACGTCAC CGCCTCCGAG
GCCGCGCAGC TCGGCCACAA CGGCATGCCG GCGGCGGACT ATGTCTGCGT TGAAGTTTCG
GACACCGGCA CCGGTATCCC GCCGGAGATC GTCGACAAGA TCTTCGAGCC GTTCTTCTCG
ACCAAGGAAG TCGGCAAGGG CACCGGGCTT GGGCTGTCGA CAGTTTACGG CATCATCAAG
CAGACCGGCG GCTTCGTGTA CGTCGATTCT GAAATCGGCA AGGGCACGAC TTTCCGCATC
TACCTGCCGC GCCACGACGC GGCGACCGAA CCGCAGCCCG AGGCGCCTGC AGTCAGCGCC
GCCGCGCCCG AGCCGGCGCC GACGGCTCCC AAGCCGCGCG CCGACATGAC CGGGCAGGGC
ACCATCCTGC TGGTCGAAGA CGAAGAAGGC CTGCGGTCGC TCAACGCCCG CGGCCTGCGC
TCGCGCGGCT ATCAGGTGAT CGAAGCCTCC AACGGCGTTG AGGCGCTGGA GGAGTTCGAC
GCCGTGAGCG GCGAGGTCGA TCTTGTGGTG TCCGACGTGG TGATGCCGGA GATGGACGGC
CCGTCGCTGC TGAAAGCGAT GCGCGGCCGT AATCCGGACC TGAAGATCAT CTTCGTCTCC
GGCTATGCCG AGGACGCTTT CGAAAAGAGC CTGCCGGAAA ACGAACAGTT CGCCTTCCTG
GCCAAGCCGT TCGCGCTCAG CGCGCTGGTC GCGAAGGTGA AGGAGACGAT GGGCGCAAGT
TGA
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| Protein sequence | MRFRPRFRQL EPRRRVPGGQ GTGSVTMTIN DQQASPEPRP ASPEPARRGG SIALVLLLAG
AIVAAAVAFM TLGRAGAQPY ILGLLALLAM VGLFMLFAFA AGIIGFADRA AEDPILRAIP
ENAFDGIAVT DAGGHVVYAN ATYLALTGAA TMQDVRPVER VFIGNPDVSE AVFRLLKAAR
EGRRLQEEVR VAGADGTQGR WMRLRVRPLG TSKREARQTV WSIADITRDR ERQEDVFQTL
QHAIEYLDHA PCGFFSVNPA GNLVYVNATL ANWLDHDLAE IGSGGLKLSD VVSGDGAALL
TSIVPEPGEV KTEVFDIDLK KRGGQTVPVR LYHKLAFGAD GTPGPSRTLV ISRARDDRLD
PQRAAEIRFM RFFDQTPMAI ATVDKTGTVV RANARLAKLA QSLDPAGAVA SKSILAAASA
RDRAVLAGAI EQAAKGQADI APVEVMLASA KERWGQFFVT AVSDETDNEA AIVHMLETTE
RRALENQVNQ AQKMDTIGQL AGGIAHDFNN VLSAIMMAND FLLNAHKPTD PSFQDIMQIK
QNATRAATLV RQLLAFSRKQ TLRPQVLDLG EALTDIDRLL KRLIGEKISL EMQHGRDLWR
TKADVSQFEQ VIVNLAVNAR DAMPDGGKLT IRTANVTASE AAQLGHNGMP AADYVCVEVS
DTGTGIPPEI VDKIFEPFFS TKEVGKGTGL GLSTVYGIIK QTGGFVYVDS EIGKGTTFRI
YLPRHDAATE PQPEAPAVSA AAPEPAPTAP KPRADMTGQG TILLVEDEEG LRSLNARGLR
SRGYQVIEAS NGVEALEEFD AVSGEVDLVV SDVVMPEMDG PSLLKAMRGR NPDLKIIFVS
GYAEDAFEKS LPENEQFAFL AKPFALSALV AKVKETMGAS
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