| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0867 |
|---|
| Symbol | |
|---|
| ID | 5693702 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 1014980 |
|---|
| End bp | 1017697 |
|---|
| Gene Length | 2718 bp |
|---|
| Protein Length | 905 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641263464 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001528754 |
|---|
| Protein GI | 158520884 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.768776 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAACC CGATTCAGCT CTCAGACGAA CTCGCCAGAC TTTTTCTGGA GAATACCAGC
TCCATGGTGG CGGTTTTCGA CAAGGAGGCC CGGTTCCTTT ACCTTAATTC TCCCAATGAA
GCAACTCTGG GCTATACGCC GGCCGAGCTT CAGGGAAAGA ACGCCTTTTC CCTTATCCAC
CCTGATGACA AAGACCGGAT GGTCTCCCTG ATGGCCAAAG CCTTTGACGG AAGGCTTGAC
AAGATTCAAT CCCTGACCTA CCGGATCATC AACAAGCAGG GCCGGGTCCG CCATGTTCAG
GCCACGTTTG ACACGGTGCG GGACGGTTCC GGGAACCTGG ACAAACTGCT CTGCGTGGCC
GACGATATTA CTGAAAAGGT AGAGATCCGA ACCGCTTTTG CGGAGAGCGA GCAGCGGCTG
CGCGCGGTCA TGGATACCGT TCCCGTGGCC ATTGCCGAAA TTGACTGTTC CGGGCGGTTT
CAGTTTGTCA ATGCCGCGTA TTGCGAGGTG TTTGAATACT CCCTCGAAGC CCTTGAGCGC
ATGAGCGTAA AGGACCTGGC CGTGTCCGAA GAGAGCGGGC AGCGGCTGCT GTTGCTGCTG
GAACGGCTGG TGGAGGAACA GCCGGAACCC CAACGGTGGG AGGGCCGGAA CCGGACCCGC
ACCGGCAGAA TCCTGGACGT GGTGGTGGAC TGGAACTACC GAAGGGATGA AGAGGGCCGG
GTCAGCGGTT TTGTGACGGC CATCAGTGAT GTCACGGAAC AGAAAAAGAT GTCCGAAGCG
CTGGTCCAGA GCCGCCAGCG CTACCAGGCC ATGTTCAACC ACATCGCCTC CGGCGTCGTG
GTCTACCAGC CGGTGGATGA CGGAGAGGAT TTTGTGATCA TCGACTTTAA CCGGACCGCG
GAAAAGATTG AGGGTATATC CGCTGAAGCG GTGATCGGGA AAAAGGTGAC CGAGGTGTTT
CCCGGCATTA GAGATATGGG GCTTCTGGAT CTGTTTCGGC GGGTCAGTGA AAACGGGCGC
CCCCGGCACC ATCCGGCCTG TTTTTACAAA GACGGCCGCA CCACCGGCTG GCGGAGCAAT
TATGTTTACC GGCTGGCCAC CGGTGAGATC GTGACGGTTT ACAACGATGA AACGGAGCGG
GTACGGGCCA GGGAGGCCCT TCGGGAGAGC GAACTTCGTT TCCGCGCCCT GGTGGAGTAT
TCGGCGGACC ATATCTTCAT GCTCAACAGT GAGGGCGCAT ACCTGTTCAG CAACGAGCGG
GTGGAACATT TTCACCGGAC CCCGGGAGAC ACCGTCATCG GCCGCCGCCT GACGGACCTT
TACCCCCCGG AACTGGCCGA CCGTTACCAG CGGCTGGTGG CTCACGTGCT TGCCGATGGC
TGCGGTACCT CCTTTGAGTA CGAGGTCCAG GGACCAGATG ACACTCATTA TTATGTGGAG
ACCCTTTATC CCATCTATAA GGAAGGCAAG CCATGGGCCG TGGGTGGCAT CTGTCGCGAT
GTGACCACCC GCAAGCAGTA TGAAAAAGAG CTTCAGCAGA AAACCGGTGA GCTGGAAAGG
GCGTTGAAGG ATTTGCGCCA GGCCCAACGG CGGTTCGTGG ACCAGGAGCG GCAGCGCGCC
CTTTCCCAGA TGGCCAGCGG CATTGCCCAC GATTTTAACA ACGCGCTCTC CTCAATTCAG
GGGTTTTCCG ATCTGCTGCT TCAGTCGCCG GAAAAGTTTT CAGACACGCC ACTGGTGAAA
CGGTATGTGG GGCTGATCAA TACGGCTGCC AGGGACGCGG CCCAGGTGGT CCGGCGGCTG
CGCAAGTTTT ACCGGCCCAG TGACGAGGAG ACCATTGAGC CGGTGGACGT GAACCGGCTC
ATCAAGGAGG CCGTGGCCCT GACCGAGCCG GTATGGAAGC ACAAGACCCA GGCCAGGGGC
GCCCCCATTA TCGTGGAGAC CCGTTTTCAG GAGCAGTTGT CGGCCAGCGG CAACCGCACC
GAACTCAACG AGGTGCTTAC CAACTTGATC TTTAACGCGG TGGATGCCAT GCCCGAAGGC
GGTTCGCTTT CCTTTGGCAC CCGCCGGGAA GCGGGATGGA TCGTCCTTGA AGTCAGTGAT
ACCGGTGTGG GCATGGATGC CACGGTTCGC CGGCAGTGCA TGAACCCCTT TTTCACCACC
AAGGGAGAGG CGGGCAGCGG TCTGGGGCTG GCCACGGTGC AAGGCATCGT CGCCCGGCAC
CAGGGACAGA TCGAGATTGT CAGCGAACCG GGAAATGGCA CCACTTTTGT CCTGCGGATA
CCGGCTGCTG TAAACAGGGA ACATAGCACT GACATGATAG AGAAGACAGA GGCGGAGCGG
TCCTCACTGA AGGTGCTGGT GGTGGACGAC GATGAACACC AGCGTCTGCT GCTGTCCGAA
TACCTGAAGG CGGATAAGCA TCGTCCGGAT ACCGCGGCCA ACGGAATCGA AGGCATGCGG
AAATTCGCCG ACGGCTGGTA TGATCTGGTG ATCACCGACC GGGCCATGCC CGAGATGAAC
GGCGATACCC TGGCCCGCAC CATCAAGGAG GCAGCCCCGG GCAAACCGGT GATCATGGTC
ACCGGTTTCG GCGACATGAT GGATGCCGCC GGAGAGGCGC CGCCGGCCGT GGATATGGTG
CTTTCCAAGC CGGTCTCCCT GGACCGCCTG CGCCATGCCG TGCGGCAGGT CCTGTCCGGC
GAGGCAGTGT CGTCATAA
|
|---|
| Protein sequence | MGNPIQLSDE LARLFLENTS SMVAVFDKEA RFLYLNSPNE ATLGYTPAEL QGKNAFSLIH
PDDKDRMVSL MAKAFDGRLD KIQSLTYRII NKQGRVRHVQ ATFDTVRDGS GNLDKLLCVA
DDITEKVEIR TAFAESEQRL RAVMDTVPVA IAEIDCSGRF QFVNAAYCEV FEYSLEALER
MSVKDLAVSE ESGQRLLLLL ERLVEEQPEP QRWEGRNRTR TGRILDVVVD WNYRRDEEGR
VSGFVTAISD VTEQKKMSEA LVQSRQRYQA MFNHIASGVV VYQPVDDGED FVIIDFNRTA
EKIEGISAEA VIGKKVTEVF PGIRDMGLLD LFRRVSENGR PRHHPACFYK DGRTTGWRSN
YVYRLATGEI VTVYNDETER VRAREALRES ELRFRALVEY SADHIFMLNS EGAYLFSNER
VEHFHRTPGD TVIGRRLTDL YPPELADRYQ RLVAHVLADG CGTSFEYEVQ GPDDTHYYVE
TLYPIYKEGK PWAVGGICRD VTTRKQYEKE LQQKTGELER ALKDLRQAQR RFVDQERQRA
LSQMASGIAH DFNNALSSIQ GFSDLLLQSP EKFSDTPLVK RYVGLINTAA RDAAQVVRRL
RKFYRPSDEE TIEPVDVNRL IKEAVALTEP VWKHKTQARG APIIVETRFQ EQLSASGNRT
ELNEVLTNLI FNAVDAMPEG GSLSFGTRRE AGWIVLEVSD TGVGMDATVR RQCMNPFFTT
KGEAGSGLGL ATVQGIVARH QGQIEIVSEP GNGTTFVLRI PAAVNREHST DMIEKTEAER
SSLKVLVVDD DEHQRLLLSE YLKADKHRPD TAANGIEGMR KFADGWYDLV ITDRAMPEMN
GDTLARTIKE AAPGKPVIMV TGFGDMMDAA GEAPPAVDMV LSKPVSLDRL RHAVRQVLSG
EAVSS
|
|---|
| |