More than 300 homologs were found in PanDaTox collection
for query gene Rpal_5220 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_5220  response regulator receiver protein  100 
 
 
126 aa  247  4e-65  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.472283  n/a   
 
 
-
 
NC_007958  RPD_0941  response regulator receiver  85.37 
 
 
125 aa  210  5.999999999999999e-54  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0832  response regulator receiver domain-containing protein  87.2 
 
 
125 aa  206  9e-53  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.155773  normal  0.875827 
 
 
-
 
NC_009485  BBta_1174  putative two-component response regulator  77.78 
 
 
126 aa  200  6e-51  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.289144  normal  0.876478 
 
 
-
 
NC_007964  Nham_0665  response regulator receiver domain-containing protein  82.11 
 
 
127 aa  196  9e-50  Nitrobacter hamburgensis X14  Bacteria  normal  0.709306  n/a   
 
 
-
 
NC_007406  Nwi_0574  response regulator receiver  78.57 
 
 
130 aa  192  2e-48  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.4385  normal 
 
 
-
 
NC_007925  RPC_4869  response regulator receiver domain-containing protein  79.46 
 
 
123 aa  178  2.9999999999999997e-44  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.337506  normal  0.697748 
 
 
-
 
NC_010505  Mrad2831_3997  response regulator receiver protein  68.6 
 
 
121 aa  164  2.9999999999999998e-40  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0883649 
 
 
-
 
NC_010511  M446_2198  response regulator receiver protein  65.08 
 
 
127 aa  162  1.0000000000000001e-39  Methylobacterium sp. 4-46  Bacteria  normal  0.16592  normal  0.62826 
 
 
-
 
NC_010172  Mext_2860  response regulator receiver  66.94 
 
 
121 aa  162  1.0000000000000001e-39  Methylobacterium extorquens PA1  Bacteria  normal  0.388237  normal 
 
 
-
 
NC_011757  Mchl_3086  response regulator receiver protein  66.94 
 
 
121 aa  162  1.0000000000000001e-39  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.342425  normal 
 
 
-
 
NC_010725  Mpop_2980  response regulator receiver protein  66.12 
 
 
121 aa  161  3e-39  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1157  response regulator receiver protein  62.7 
 
 
127 aa  157  4e-38  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.116971  n/a   
 
 
-
 
NC_011989  Avi_4023  two component response regulator  60.33 
 
 
119 aa  137  4.999999999999999e-32  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3569  response regulator receiver protein  59.5 
 
 
119 aa  133  9e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.146165 
 
 
-
 
NC_009719  Plav_1598  response regulator receiver protein  54.33 
 
 
127 aa  131  3e-30  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3862  response regulator receiver protein  58.68 
 
 
119 aa  131  3e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.762525  normal  0.105944 
 
 
-
 
NC_008254  Meso_3094  response regulator receiver protein  53.72 
 
 
121 aa  125  2.0000000000000002e-28  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2540  response regulator receiver protein  60.33 
 
 
119 aa  122  2e-27  Sinorhizobium medicae WSM419  Bacteria  normal  0.676292  normal 
 
 
-
 
NC_009511  Swit_0513  multi-sensor hybrid histidine kinase  41.03 
 
 
803 aa  84.3  5e-16  Sphingomonas wittichii RW1  Bacteria  normal  0.883754  normal 
 
 
-
 
NC_008347  Mmar10_2507  response regulator receiver protein  40.5 
 
 
121 aa  82.8  0.000000000000002  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_1777  two component, sigma54 specific, Fis family transcriptional regulator  34.78 
 
 
465 aa  79.7  0.00000000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1446  multi-sensor hybrid histidine kinase  37.19 
 
 
811 aa  79.3  0.00000000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2109  two component, sigma54 specific, transcriptional regulator, Fis family  37.7 
 
 
515 aa  78.6  0.00000000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007498  Pcar_2145  two component signal transduction response regulator  35.04 
 
 
492 aa  76.3  0.0000000000001  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2786  two component, sigma54 specific, transcriptional regulator, Fis family  37.01 
 
 
480 aa  76.3  0.0000000000001  Geobacter lovleyi SZ  Bacteria  normal  0.543097  n/a   
 
 
-
 
NC_009719  Plav_1998  response regulator receiver protein  46.49 
 
 
120 aa  75.5  0.0000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  hitchhiker  0.00000230643  normal 
 
 
-
 
NC_009523  RoseRS_0520  multi-sensor signal transduction histidine kinase  38.84 
 
 
556 aa  76.3  0.0000000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.936608  normal  0.731504 
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  38.52 
 
 
458 aa  75.9  0.0000000000002  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_3138  two component transcriptional regulator  38.1 
 
 
224 aa  76.3  0.0000000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  39.5 
 
 
462 aa  75.9  0.0000000000002  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_013173  Dbac_2666  two component, sigma54 specific, transcriptional regulator, Fis family  36.89 
 
 
459 aa  75.1  0.0000000000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0224  response regulator receiver sensor signal transduction histidine kinase  37.82 
 
 
379 aa  74.7  0.0000000000004  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3634  response regulator receiver sensor signal transduction histidine kinase  37.82 
 
 
379 aa  74.7  0.0000000000004  Geobacter bemidjiensis Bem  Bacteria  normal  0.0261897  n/a   
 
 
-
 
NC_009972  Haur_0852  GAF sensor hybrid histidine kinase  33.61 
 
 
1055 aa  74.7  0.0000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1924  two component transcriptional regulator, winged helix family  39.81 
 
 
225 aa  74.3  0.0000000000006  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0504  two component, sigma54 specific, Fis family transcriptional regulator  36.52 
 
 
443 aa  73.9  0.0000000000007  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1273  multi-sensor signal transduction histidine kinase  37.5 
 
 
556 aa  73.6  0.0000000000008  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.12815  normal  0.758765 
 
 
-
 
NC_014212  Mesil_0142  two component transcriptional regulator, winged helix family  35.14 
 
 
221 aa  73.6  0.0000000000008  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.709604 
 
 
-
 
NC_012918  GM21_3739  response regulator receiver sensor signal transduction histidine kinase  37.82 
 
 
379 aa  73.6  0.0000000000009  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008554  Sfum_2092  two component, sigma54 specific, Fis family transcriptional regulator  31.4 
 
 
462 aa  73.6  0.0000000000009  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.131918 
 
 
-
 
NC_007517  Gmet_0202  response regulator receiver sensor signal transduction histidine kinase  38.33 
 
 
374 aa  73.2  0.000000000001  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_011891  A2cp1_0533  two component, sigma54 specific, transcriptional regulator, Fis family  36.52 
 
 
443 aa  72.8  0.000000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.141325  n/a   
 
 
-
 
NC_011145  AnaeK_0537  two component, sigma54 specific, transcriptional regulator, Fis family  36.52 
 
 
446 aa  72.8  0.000000000002  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1287  response regulator receiver domain-containing protein  39.64 
 
 
127 aa  72.8  0.000000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.442215  n/a   
 
 
-
 
NC_007912  Sde_3108  response regulator receiver domain-containing protein  40.37 
 
 
120 aa  72.4  0.000000000002  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_011655  BCAH187_C0255  DNA-binding response regulator  34.58 
 
 
226 aa  72  0.000000000002  Bacillus cereus AH187  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0863  response regulator receiver protein  42.62 
 
 
118 aa  72.8  0.000000000002  Caulobacter sp. K31  Bacteria  normal  normal  0.385882 
 
 
-
 
NC_008783  BARBAKC583_0612  response regulator  38.89 
 
 
120 aa  72  0.000000000002  Bartonella bacilliformis KC583  Bacteria  normal  0.124392  n/a   
 
 
-
 
NC_013173  Dbac_0831  multi-sensor hybrid histidine kinase  33.63 
 
 
957 aa  72.4  0.000000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0436  response regulator receiver protein  32.31 
 
 
370 aa  72.4  0.000000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0149  sensor histidine kinase/response regulator  36.07 
 
 
371 aa  71.6  0.000000000003  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3603  response regulator receiver protein  29.75 
 
 
131 aa  72  0.000000000003  Geobacter lovleyi SZ  Bacteria  normal  0.656399  n/a   
 
 
-
 
NC_010571  Oter_1278  two component, sigma54 specific, Fis family transcriptional regulator  35.59 
 
 
452 aa  71.6  0.000000000003  Opitutus terrae PB90-1  Bacteria  normal  0.902353  normal 
 
 
-
 
NC_009511  Swit_0135  response regulator receiver protein  40.54 
 
 
124 aa  71.6  0.000000000003  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_0302  two component transcriptional regulator, winged helix family  34.23 
 
 
221 aa  72  0.000000000003  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_0114  Signal transduction histidine kinase  38.46 
 
 
939 aa  72  0.000000000003  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.153209 
 
 
-
 
NC_009719  Plav_2576  multi-sensor hybrid histidine kinase  33.33 
 
 
840 aa  71.6  0.000000000003  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.0149194 
 
 
-
 
NC_009675  Anae109_2379  two component, sigma54 specific, Fis family transcriptional regulator  38.79 
 
 
446 aa  71.6  0.000000000004  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.373235  normal  0.0399931 
 
 
-
 
NC_003909  BCE_3179  DNA-binding response regulator VicR  33.94 
 
 
226 aa  71.6  0.000000000004  Bacillus cereus ATCC 10987  Bacteria  normal  0.0879082  n/a   
 
 
-
 
NC_008254  Meso_2750  response regulator receiver protein  39.52 
 
 
120 aa  71.6  0.000000000004  Chelativorans sp. BNC1  Bacteria  hitchhiker  0.000684047  n/a   
 
 
-
 
NC_012918  GM21_1405  two component, sigma54 specific, transcriptional regulator, Fis family  34.96 
 
 
478 aa  71.2  0.000000000005  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000117702 
 
 
-
 
NC_011146  Gbem_2805  two component, sigma54 specific, transcriptional regulator, Fis family  34.96 
 
 
478 aa  70.9  0.000000000005  Geobacter bemidjiensis Bem  Bacteria  normal  0.228775  n/a   
 
 
-
 
NC_010718  Nther_0252  response regulator receiver protein  33.33 
 
 
239 aa  70.9  0.000000000005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.114255 
 
 
-
 
NC_013739  Cwoe_5905  two component transcriptional regulator, winged helix family  34.19 
 
 
237 aa  70.9  0.000000000005  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_1453  two component transcriptional regulator  34.68 
 
 
244 aa  71.2  0.000000000005  Synechococcus elongatus PCC 7942  Bacteria  normal  0.952418  normal  0.0249242 
 
 
-
 
NC_013946  Mrub_1260  response regulator receiver protein  36.72 
 
 
331 aa  70.9  0.000000000006  Meiothermus ruber DSM 1279  Bacteria  normal  0.208704  normal 
 
 
-
 
NC_010571  Oter_4629  multi-sensor hybrid histidine kinase  37.29 
 
 
841 aa  70.9  0.000000000006  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0878  integral membrane sensor hybrid histidine kinase  39.29 
 
 
754 aa  70.9  0.000000000006  Methylobacterium sp. 4-46  Bacteria  normal  0.307069  normal 
 
 
-
 
NC_009720  Xaut_2816  response regulator receiver protein  36.36 
 
 
120 aa  70.5  0.000000000007  Xanthobacter autotrophicus Py2  Bacteria  normal  0.101903  normal  0.104606 
 
 
-
 
NC_008009  Acid345_0520  periplasmic sensor hybrid histidine kinase  31.71 
 
 
751 aa  70.5  0.000000000008  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3461  histidine kinase  41.94 
 
 
533 aa  70.1  0.000000000009  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1727  periplasmic sensor hybrid histidine kinase  36.75 
 
 
793 aa  70.1  0.000000000009  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_013171  Apre_1374  two component transcriptional regulator, winged helix family  33.61 
 
 
219 aa  69.7  0.00000000001  Anaerococcus prevotii DSM 20548  Bacteria  hitchhiker  0.0000555295  n/a   
 
 
-
 
NC_009675  Anae109_4372  signal transduction histidine kinase, nitrogen specific, NtrB  32.06 
 
 
641 aa  69.7  0.00000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.755089  normal  0.0153537 
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  34.4 
 
 
457 aa  70.1  0.00000000001  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_0583  response regulator receiver protein  27.64 
 
 
394 aa  69.7  0.00000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007335  PMN2A_1500  two component transcriptional regulator  35.34 
 
 
248 aa  70.1  0.00000000001  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2316  response regulator receiver protein  34.48 
 
 
226 aa  69.7  0.00000000001  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.00000147543  hitchhiker  0.000888492 
 
 
-
 
NC_010184  BcerKBAB4_5055  two component transcriptional regulator  35.78 
 
 
223 aa  69.7  0.00000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_0268  two component transcriptional regulator, winged helix family  37.29 
 
 
227 aa  69.7  0.00000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.509377 
 
 
-
 
NC_009668  Oant_4284  response regulator receiver protein  38.71 
 
 
130 aa  69.7  0.00000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008819  NATL1_02061  two-component response regulator  37.04 
 
 
248 aa  70.1  0.00000000001  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal  0.540525 
 
 
-
 
NC_008048  Sala_1335  response regulator receiver protein  38.74 
 
 
125 aa  69.7  0.00000000001  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.51819  normal  0.0884587 
 
 
-
 
NC_009767  Rcas_0845  response regulator receiver modulated metal dependent phosphohydrolase  37.4 
 
 
508 aa  70.1  0.00000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.903712  hitchhiker  0.00198769 
 
 
-
 
NC_008312  Tery_0954  two component transcriptional regulator  35.9 
 
 
243 aa  69.7  0.00000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0817018 
 
 
-
 
NC_011662  Tmz1t_3848  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  36.8 
 
 
703 aa  69.7  0.00000000001  Thauera sp. MZ1T  Bacteria  normal  0.343403  n/a   
 
 
-
 
NC_010172  Mext_3139  histidine kinase  41.94 
 
 
533 aa  70.1  0.00000000001  Methylobacterium extorquens PA1  Bacteria  normal  0.468681  normal  0.330779 
 
 
-
 
NC_009767  Rcas_3604  putative PAS/PAC sensor protein  38.18 
 
 
619 aa  68.9  0.00000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.562878 
 
 
-
 
NC_011830  Dhaf_4779  two component, sigma54 specific, transcriptional regulator, Fis family  31.4 
 
 
494 aa  69.3  0.00000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0043  response regulator  38.71 
 
 
120 aa  69.3  0.00000000002  Brucella suis 1330  Bacteria  normal  0.868286  n/a   
 
 
-
 
NC_010725  Mpop_0313  response regulator receiver protein  35.96 
 
 
203 aa  68.9  0.00000000002  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_0638  two component, sigma54 specific, Fis family transcriptional regulator  30.89 
 
 
453 aa  68.9  0.00000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  32.23 
 
 
473 aa  69.3  0.00000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_007517  Gmet_2563  two component, sigma54 specific, Fis family transcriptional regulator  37.74 
 
 
480 aa  69.3  0.00000000002  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00247378 
 
 
-
 
NC_007520  Tcr_0754  response regulator receiver domain-containing protein  34.43 
 
 
120 aa  68.9  0.00000000002  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0040  response regulator  38.71 
 
 
120 aa  69.3  0.00000000002  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5491  cell cycle control histidine kinase CckA  32.5 
 
 
892 aa  69.3  0.00000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.606378  normal 
 
 
-
 
NC_008554  Sfum_3738  response regulator receiver modulated metal dependent phosphohydrolase  36.36 
 
 
384 aa  69.3  0.00000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2976  PAS/PAC sensor hybrid histidine kinase  40.19 
 
 
889 aa  68.9  0.00000000002  Acidovorax citrulli AAC00-1  Bacteria  normal  0.29382  normal  0.115477 
 
 
-
 
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