More than 300 homologs were found in PanDaTox collection
for query gene Nwi_0574 on replicon NC_007406
Organism: Nitrobacter winogradskyi Nb-255



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007406  Nwi_0574  response regulator receiver  100 
 
 
130 aa  250  5.000000000000001e-66  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.4385  normal 
 
 
-
 
NC_007964  Nham_0665  response regulator receiver domain-containing protein  90.98 
 
 
127 aa  213  8e-55  Nitrobacter hamburgensis X14  Bacteria  normal  0.709306  n/a   
 
 
-
 
NC_011004  Rpal_5220  response regulator receiver protein  78.57 
 
 
126 aa  192  2e-48  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.472283  n/a   
 
 
-
 
NC_009485  BBta_1174  putative two-component response regulator  79.51 
 
 
126 aa  191  2e-48  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.289144  normal  0.876478 
 
 
-
 
NC_007958  RPD_0941  response regulator receiver  79.67 
 
 
125 aa  190  7e-48  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0832  response regulator receiver domain-containing protein  83.04 
 
 
125 aa  182  1.0000000000000001e-45  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.155773  normal  0.875827 
 
 
-
 
NC_007925  RPC_4869  response regulator receiver domain-containing protein  79.46 
 
 
123 aa  175  2e-43  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.337506  normal  0.697748 
 
 
-
 
NC_010511  M446_2198  response regulator receiver protein  63.93 
 
 
127 aa  159  2e-38  Methylobacterium sp. 4-46  Bacteria  normal  0.16592  normal  0.62826 
 
 
-
 
NC_010725  Mpop_2980  response regulator receiver protein  63.87 
 
 
121 aa  156  9e-38  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3086  response regulator receiver protein  63.87 
 
 
121 aa  156  9e-38  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.342425  normal 
 
 
-
 
NC_010172  Mext_2860  response regulator receiver  63.87 
 
 
121 aa  156  9e-38  Methylobacterium extorquens PA1  Bacteria  normal  0.388237  normal 
 
 
-
 
NC_010505  Mrad2831_3997  response regulator receiver protein  64.71 
 
 
121 aa  155  3e-37  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0883649 
 
 
-
 
NC_011894  Mnod_1157  response regulator receiver protein  60.66 
 
 
127 aa  152  2e-36  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.116971  n/a   
 
 
-
 
NC_011989  Avi_4023  two component response regulator  61.67 
 
 
119 aa  142  2e-33  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3569  response regulator receiver protein  60.83 
 
 
119 aa  136  7.999999999999999e-32  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.146165 
 
 
-
 
NC_012850  Rleg_3862  response regulator receiver protein  59.17 
 
 
119 aa  132  9.999999999999999e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.762525  normal  0.105944 
 
 
-
 
NC_009636  Smed_2540  response regulator receiver protein  61.34 
 
 
119 aa  125  2.0000000000000002e-28  Sinorhizobium medicae WSM419  Bacteria  normal  0.676292  normal 
 
 
-
 
NC_009719  Plav_1598  response regulator receiver protein  49.21 
 
 
127 aa  121  4e-27  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_3094  response regulator receiver protein  52.94 
 
 
121 aa  120  5e-27  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2507  response regulator receiver protein  43.97 
 
 
121 aa  89.7  1e-17  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1998  response regulator receiver protein  45 
 
 
120 aa  80.9  0.000000000000005  Parvibaculum lavamentivorans DS-1  Bacteria  hitchhiker  0.00000230643  normal 
 
 
-
 
NC_009511  Swit_0513  multi-sensor hybrid histidine kinase  39.32 
 
 
803 aa  80.9  0.000000000000006  Sphingomonas wittichii RW1  Bacteria  normal  0.883754  normal 
 
 
-
 
NC_007794  Saro_1446  multi-sensor hybrid histidine kinase  39.32 
 
 
811 aa  80.1  0.00000000000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0142  two component transcriptional regulator, winged helix family  36.29 
 
 
221 aa  79  0.00000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.709604 
 
 
-
 
NC_008609  Ppro_1655  two component, sigma54 specific, Fis family transcriptional regulator  35.04 
 
 
462 aa  79  0.00000000000002  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.000025661  n/a   
 
 
-
 
NC_009943  Dole_1777  two component, sigma54 specific, Fis family transcriptional regulator  33.04 
 
 
465 aa  77.4  0.00000000000006  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0520  multi-sensor signal transduction histidine kinase  38.46 
 
 
556 aa  77  0.00000000000008  Roseiflexus sp. RS-1  Bacteria  normal  0.936608  normal  0.731504 
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  34.19 
 
 
458 aa  77  0.00000000000008  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_0504  two component, sigma54 specific, Fis family transcriptional regulator  38.26 
 
 
443 aa  77  0.00000000000008  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1727  periplasmic sensor hybrid histidine kinase  38.79 
 
 
793 aa  77  0.00000000000008  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3634  response regulator receiver sensor signal transduction histidine kinase  36.97 
 
 
379 aa  77  0.00000000000008  Geobacter bemidjiensis Bem  Bacteria  normal  0.0261897  n/a   
 
 
-
 
NC_010571  Oter_1278  two component, sigma54 specific, Fis family transcriptional regulator  36.89 
 
 
452 aa  76.6  0.00000000000009  Opitutus terrae PB90-1  Bacteria  normal  0.902353  normal 
 
 
-
 
NC_007912  Sde_3108  response regulator receiver domain-containing protein  39.67 
 
 
120 aa  76.3  0.0000000000001  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_03275  two-component system, transcriptional regulatory protein  28.91 
 
 
234 aa  76.3  0.0000000000001  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0863  response regulator receiver protein  44.83 
 
 
118 aa  76.3  0.0000000000001  Caulobacter sp. K31  Bacteria  normal  normal  0.385882 
 
 
-
 
NC_012918  GM21_3739  response regulator receiver sensor signal transduction histidine kinase  36.97 
 
 
379 aa  75.9  0.0000000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009675  Anae109_2379  two component, sigma54 specific, Fis family transcriptional regulator  37.69 
 
 
446 aa  75.5  0.0000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.373235  normal  0.0399931 
 
 
-
 
NC_011831  Cagg_3302  two component transcriptional regulator, winged helix family  36.22 
 
 
231 aa  75.5  0.0000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.000343135 
 
 
-
 
NC_008554  Sfum_3738  response regulator receiver modulated metal dependent phosphohydrolase  38.05 
 
 
384 aa  75.9  0.0000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_0533  two component, sigma54 specific, transcriptional regulator, Fis family  37.39 
 
 
443 aa  75.1  0.0000000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.141325  n/a   
 
 
-
 
NC_011145  AnaeK_0537  two component, sigma54 specific, transcriptional regulator, Fis family  37.39 
 
 
446 aa  75.5  0.0000000000003  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_1916  response regulator receiver protein  36.36 
 
 
128 aa  75.1  0.0000000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  0.639162  normal 
 
 
-
 
NC_009511  Swit_0135  response regulator receiver protein  40.54 
 
 
124 aa  74.7  0.0000000000004  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0852  GAF sensor hybrid histidine kinase  34.11 
 
 
1055 aa  74.7  0.0000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0302  two component transcriptional regulator, winged helix family  34.68 
 
 
221 aa  74.3  0.0000000000006  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_3600  two component transcriptional regulator, winged helix family  31.82 
 
 
250 aa  73.9  0.0000000000007  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00284005 
 
 
-
 
NC_007498  Pcar_2145  two component signal transduction response regulator  31.62 
 
 
492 aa  73.6  0.0000000000008  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1273  multi-sensor signal transduction histidine kinase  37.61 
 
 
556 aa  73.6  0.0000000000008  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.12815  normal  0.758765 
 
 
-
 
NC_010814  Glov_3603  response regulator receiver protein  28.7 
 
 
131 aa  73.6  0.0000000000009  Geobacter lovleyi SZ  Bacteria  normal  0.656399  n/a   
 
 
-
 
NC_009483  Gura_0224  response regulator receiver sensor signal transduction histidine kinase  34.45 
 
 
379 aa  72.8  0.000000000001  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0845  response regulator receiver modulated metal dependent phosphohydrolase  37.5 
 
 
508 aa  73.6  0.000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.903712  hitchhiker  0.00198769 
 
 
-
 
NC_010814  Glov_2786  two component, sigma54 specific, transcriptional regulator, Fis family  33.91 
 
 
480 aa  73.6  0.000000000001  Geobacter lovleyi SZ  Bacteria  normal  0.543097  n/a   
 
 
-
 
NC_011769  DvMF_2109  two component, sigma54 specific, transcriptional regulator, Fis family  37.7 
 
 
515 aa  73.2  0.000000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009831  Ssed_2316  response regulator receiver protein  36.04 
 
 
226 aa  73.2  0.000000000001  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.00000147543  hitchhiker  0.000888492 
 
 
-
 
NC_011655  BCAH187_C0255  DNA-binding response regulator  35.51 
 
 
226 aa  73.2  0.000000000001  Bacillus cereus AH187  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1335  response regulator receiver protein  39.64 
 
 
125 aa  73.2  0.000000000001  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.51819  normal  0.0884587 
 
 
-
 
NC_013739  Cwoe_5905  two component transcriptional regulator, winged helix family  33.33 
 
 
237 aa  73.2  0.000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1696  two component transcriptional regulator, winged helix family  35 
 
 
224 aa  72.4  0.000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_002939  GSU1495  sigma-54 dependent DNA-binding response regulator  34.48 
 
 
458 aa  72.4  0.000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  0.301103  n/a   
 
 
-
 
NC_013440  Hoch_3222  two component, sigma54 specific, transcriptional regulator, Fis family  37.9 
 
 
447 aa  72.4  0.000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0905113 
 
 
-
 
NC_010511  M446_0878  integral membrane sensor hybrid histidine kinase  40.74 
 
 
754 aa  72.8  0.000000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.307069  normal 
 
 
-
 
NC_007406  Nwi_0114  Signal transduction histidine kinase  41.07 
 
 
939 aa  72.4  0.000000000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.153209 
 
 
-
 
NC_007517  Gmet_0202  response regulator receiver sensor signal transduction histidine kinase  35.83 
 
 
374 aa  72.4  0.000000000002  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_007604  Synpcc7942_1453  two component transcriptional regulator  36.97 
 
 
244 aa  72.4  0.000000000002  Synechococcus elongatus PCC 7942  Bacteria  normal  0.952418  normal  0.0249242 
 
 
-
 
NC_008025  Dgeo_1069  response regulator receiver protein  37.72 
 
 
128 aa  72.8  0.000000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0511705  normal  0.476202 
 
 
-
 
NC_008554  Sfum_2092  two component, sigma54 specific, Fis family transcriptional regulator  28.46 
 
 
462 aa  72.4  0.000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.131918 
 
 
-
 
NC_011884  Cyan7425_1115  two component transcriptional regulator, winged helix family  34.59 
 
 
243 aa  72.4  0.000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.0950226  normal 
 
 
-
 
NC_008726  Mvan_1931  multi-sensor signal transduction histidine kinase  39.66 
 
 
1385 aa  72.4  0.000000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2453  two component, sigma54 specific, Fis family transcriptional regulator  33.33 
 
 
461 aa  72  0.000000000003  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000196128  normal 
 
 
-
 
NC_010184  BcerKBAB4_5055  two component transcriptional regulator  34.82 
 
 
223 aa  71.2  0.000000000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2302  two component transcriptional regulator, winged helix family  36.67 
 
 
243 aa  71.2  0.000000000004  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_2353  two component transcriptional regulator, winged helix family  36.67 
 
 
243 aa  71.2  0.000000000004  Cyanothece sp. PCC 8802  Bacteria  normal  0.0794558  normal 
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  33.9 
 
 
473 aa  70.9  0.000000000005  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_007335  PMN2A_1500  two component transcriptional regulator  35.59 
 
 
248 aa  70.9  0.000000000005  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3604  putative PAS/PAC sensor protein  37.61 
 
 
619 aa  71.2  0.000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.562878 
 
 
-
 
NC_008312  Tery_0954  two component transcriptional regulator  34.38 
 
 
243 aa  71.2  0.000000000005  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0817018 
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  33.9 
 
 
473 aa  70.9  0.000000000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_010505  Mrad2831_2229  multi-sensor hybrid histidine kinase  32.41 
 
 
925 aa  70.9  0.000000000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.843602  normal 
 
 
-
 
NC_008781  Pnap_0436  response regulator receiver protein  30.65 
 
 
370 aa  70.9  0.000000000006  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_2837  response regulator receiver protein  33.06 
 
 
122 aa  70.9  0.000000000006  Opitutus terrae PB90-1  Bacteria  normal  decreased coverage  0.000598352 
 
 
-
 
NC_009972  Haur_1267  response regulator receiver sensor signal transduction histidine kinase  37.07 
 
 
542 aa  70.9  0.000000000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_1287  response regulator receiver domain-containing protein  37.84 
 
 
127 aa  70.9  0.000000000006  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.442215  n/a   
 
 
-
 
NC_013739  Cwoe_5381  two component transcriptional regulator, winged helix family  34.62 
 
 
235 aa  70.5  0.000000000007  Conexibacter woesei DSM 14684  Bacteria  normal  0.0242785  normal 
 
 
-
 
NC_002939  GSU0149  sensor histidine kinase/response regulator  33.61 
 
 
371 aa  70.5  0.000000000007  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010180  BcerKBAB4_5511  two component transcriptional regulator  31.53 
 
 
236 aa  70.5  0.000000000007  Bacillus weihenstephanensis KBAB4  Bacteria  normal  normal  0.567595 
 
 
-
 
NC_009338  Mflv_4423  multi-sensor signal transduction histidine kinase  36.75 
 
 
1361 aa  70.1  0.000000000008  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.498632 
 
 
-
 
NC_013173  Dbac_0831  multi-sensor hybrid histidine kinase  32.74 
 
 
957 aa  70.5  0.000000000008  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  33.9 
 
 
473 aa  70.5  0.000000000008  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4207  two component transcriptional regulator, winged helix family  34.45 
 
 
247 aa  70.5  0.000000000008  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008819  NATL1_02061  two-component response regulator  35.59 
 
 
248 aa  70.5  0.000000000008  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal  0.540525 
 
 
-
 
NC_011146  Gbem_2805  two component, sigma54 specific, transcriptional regulator, Fis family  34.82 
 
 
478 aa  70.1  0.000000000009  Geobacter bemidjiensis Bem  Bacteria  normal  0.228775  n/a   
 
 
-
 
NC_003909  BCE_5379  DNA-binding response regulator  34.82 
 
 
223 aa  69.7  0.00000000001  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5353  DNA-binding response regulator  34.82 
 
 
223 aa  69.7  0.00000000001  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011898  Ccel_0246  two component transcriptional regulator, winged helix family  29.73 
 
 
225 aa  69.7  0.00000000001  Clostridium cellulolyticum H10  Bacteria  normal  0.0272164  n/a   
 
 
-
 
NC_006274  BCZK4959  DNA-binding response regulator  34.82 
 
 
223 aa  69.7  0.00000000001  Bacillus cereus E33L  Bacteria  hitchhiker  0.000160223  n/a   
 
 
-
 
NC_011658  BCAH187_A5433  DNA-binding response regulator  34.82 
 
 
223 aa  69.7  0.00000000001  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0754  response regulator receiver domain-containing protein  38.18 
 
 
120 aa  70.1  0.00000000001  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0323  response regulator receiver protein  37.96 
 
 
127 aa  70.1  0.00000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.47332  normal  0.784994 
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  29.06 
 
 
457 aa  70.1  0.00000000001  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1938  response regulator receiver protein  34.59 
 
 
244 aa  69.7  0.00000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
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