| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3604 |
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| Symbol | |
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| ID | 5541105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 4702858 |
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| End bp | 4704717 |
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| Gene Length | 1860 bp |
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| Protein Length | 619 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640895723 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001433671 |
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| Protein GI | 156743542 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG2206] HD-GYP domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00277] uncharacterized domain HDIG |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.562878 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGCGA CCAGCACCAT CTTGATCGCC GATGACGATC CGGGCGCGCG CCTTGTTCTA
CAACGACTGT TGACGCGCGA GGGTCATCGG GTGCTGATGG CTCAGAACGG CGCCGAGGCA
CTGCGTCAGT CGATCGAATA TACGCCAGAT TTGCTGCTTC TAGATGTATT GATGCCGGAG
ATCGACGGTT TTGAGGTTTG TCGGCAATTA CGCAATCATA CACGGCTCCG CGAGATCCCC
ATTCTTTTGA TCACGTCGCT TGGCGATCAG CAGTCACGTG TGGAGGGGTT GAGCGCGGGC
GCTAATGGAT TCATCACCAA GCCGTTCGAC ATGGCGGAAC TGCTGGCGCA TGTGCGCACC
ATCACCCGTC TCAACCGCTA TCGCCGTTTA TTGTCAGAAC AGGAGCGGTT CCAGCGTCTG
ATCGAACTTT CACCGGAAGG CATCGCTATC ATCAATGAGG AAAGCCGATT GCTGCTCGTG
AACCCTGCGC TGGTCGCGCT GCTCGAAGCT CCGTCTGCCG GGTATCTCCT GGGTGACACA
TTGCTCAACT ATCTGCATAT TGCTGGGCTT GATCGCTATC GGGCGGGCAT CAGAGCGCTC
ATGCAAGAGA CGCAGCAGGT CTGGCGCATT GAACTCGATC TGATCAGCGT CAACGGTCAC
GCTACTCCCG CCGAAATCAG TCTGGGACGT TTTCGCGACC AGAATGGCGC ATTTGCTCAG
GTGATCATCC GCGATATTTC GGAACGTAAA CGCGCCGAGG CACAGATCTA TCGGCAGGTC
AGCCGACTGA CCAGTCTGCA TACCATCGGC GTCGCTATTA CAGCAAGCCT GGAGCTTCCG
GCAACGCTGG CGATCCTGCT GGATCGCCTG ATTGAGGAGT TGCACGTCGA TGCAGCGAGT
GTGCTATTGT TCAACCCACG CACCACAATG CTCGAAACAG CCTGCAACCG GGGGCTGCCG
CGCGATCTTG CCGAGGTGGC GATCTGCGCT GAGGAAGGAC TGGCTGGCAT GGCGTTTCGT
TCGCGTCAAA CGGTCTCGCT CGCAACCTTT CCTTCCGAGA TGCTGATCAG TCCACGTGAT
CAAATGCTGG CTGCGGCATT TGCAACATAC TTTGCCGTAC CCTTGCAGGC GCGCGACGAA
ATCAAAGGCG TGCTCGAAAT CTTGCAGCGC GCCTCGTTTA CGCCCGACGA GCATTGGTGG
ACATTTCTCG AAGCGCTGGC GATGCAGGCG GCGATTGCTA TCGATACATC TTCGCTCTTC
GAAGATTTGC GACGCACACA CGCAGAATTG AAGCAATCCT ACGATGCAAC GATTGCCGGC
TGGTCGCGCG CGCTGGATTT GCGCGACCGT GAAACGGAAG GGCATAGCGA ACGTGTAACA
GAGCTAACCC TGCGGCTGGC GCGTTGGATG GGCATTCCTG AGGATCAGAT GGAACATATC
CGGCGCGGCG CGCTCCTTCA CGATATTGGC AAGATGGGCG TTCCCGATCA TATTTTGCTT
AAGCCAGGCC CGCTGAGTGT CGATGAATGG GCGATCATGC GCCAGCATCC GGTCTATGCG
TTTCGCTGGC TCTCGGCGAT TCCCTTTCTG CAACCTGCGC TCGATATTCC CTATGCCCAT
CACGAACGAT GGGATGGCAG CGGTTACCCG CGCGGATTGC GTGGTGAACA GATCCCACTT
GCCGCGCGTA TCTTTGCGGT CGTCGATGTG TGGGACGCGC TGCGCTCTGA TCGACCGTAT
CGTTCAGCCT GGACAGAAGA ACAGACGATC GCATACCTCC GCTCCCTGGC CAGTACGCAT
TTCGATCCGG CCGTGGTGGC TGCATTTCTT GACATGATCG GGCAGGGGCG CAGGGAGTAG
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| Protein sequence | MDATSTILIA DDDPGARLVL QRLLTREGHR VLMAQNGAEA LRQSIEYTPD LLLLDVLMPE
IDGFEVCRQL RNHTRLREIP ILLITSLGDQ QSRVEGLSAG ANGFITKPFD MAELLAHVRT
ITRLNRYRRL LSEQERFQRL IELSPEGIAI INEESRLLLV NPALVALLEA PSAGYLLGDT
LLNYLHIAGL DRYRAGIRAL MQETQQVWRI ELDLISVNGH ATPAEISLGR FRDQNGAFAQ
VIIRDISERK RAEAQIYRQV SRLTSLHTIG VAITASLELP ATLAILLDRL IEELHVDAAS
VLLFNPRTTM LETACNRGLP RDLAEVAICA EEGLAGMAFR SRQTVSLATF PSEMLISPRD
QMLAAAFATY FAVPLQARDE IKGVLEILQR ASFTPDEHWW TFLEALAMQA AIAIDTSSLF
EDLRRTHAEL KQSYDATIAG WSRALDLRDR ETEGHSERVT ELTLRLARWM GIPEDQMEHI
RRGALLHDIG KMGVPDHILL KPGPLSVDEW AIMRQHPVYA FRWLSAIPFL QPALDIPYAH
HERWDGSGYP RGLRGEQIPL AARIFAVVDV WDALRSDRPY RSAWTEEQTI AYLRSLASTH
FDPAVVAAFL DMIGQGRRE
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