| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2316 |
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| Symbol | |
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| ID | 5610962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2807019 |
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| End bp | 2807699 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640933226 |
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| Product | response regulator receiver protein |
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| Protein accession | YP_001474053 |
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| Protein GI | 157375453 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000147543 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000888492 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTAAAG TATTAGTAGT AGATGATGAT CTGATTTTCA GGGAGTTACT AAAAGAAGCA
TTAGAATGTG AAGGACATGA AGTTATTAGT GCCCAAAACG GTATGGAAGC CTTATCCATT
CTCGAGTGTG AACTCCCGGA CATTATCCTG CTAGATATCA TGATGCCAAA GTTAGATGGA
TTTGGATTAT TGGCTGCGAG AAAAGATCAG ATCCCTGTGA TAGTCATCTC TGCCATCGAC
AATGAAGATG AAAGGATTAA AGGCTATGAA CTTGGGGCTG ATGACTTTTT AACTAAGCCG
TTTAGCATAA AGGAGCTTTT AGTGCGCATG ACAGCATTAC AACGACGAGT CGAGTTAACC
CGAGCTGAGA ACACTGCAGA ATCCGATTCT CTGAATAGTG AAATACTATT TGATGATATG
CAGTATTGTG TATCGATCGC CTCGCGGGAA GTGGTGTTAA CTCAAACTGA ATTTAAGTTA
TTTAAATACC TGTTCGAAAG AAAGGGTGAG GTGATCACCA AGCAGGAATT GCAGCGTAGT
GTGCTTCAAA AGGACTTAGG TCGATTCGAT CGAAATCTCG ACATGCACAT CAGTAATACC
CGTCGAAAGC TGGCCGATAC TAAGTTACCC AAAACCTTGA TCAATACAGT TAGAGGACAA
GGTTACAGTT TTGCTTCTTA A
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| Protein sequence | MSKVLVVDDD LIFRELLKEA LECEGHEVIS AQNGMEALSI LECELPDIIL LDIMMPKLDG
FGLLAARKDQ IPVIVISAID NEDERIKGYE LGADDFLTKP FSIKELLVRM TALQRRVELT
RAENTAESDS LNSEILFDDM QYCVSIASRE VVLTQTEFKL FKYLFERKGE VITKQELQRS
VLQKDLGRFD RNLDMHISNT RRKLADTKLP KTLINTVRGQ GYSFAS
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