More than 300 homologs were found in PanDaTox collection
for query gene Mrub_1260 on replicon NC_013946
Organism: Meiothermus ruber DSM 1279



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013946  Mrub_1260  response regulator receiver protein  100 
 
 
331 aa  646    Meiothermus ruber DSM 1279  Bacteria  normal  0.208704  normal 
 
 
-
 
NC_009943  Dole_1977  response regulator receiver protein  37.5 
 
 
265 aa  146  5e-34  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1938  response regulator receiver protein  36.6 
 
 
244 aa  135  8e-31  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_6827  response regulator receiver protein  33.76 
 
 
389 aa  121  1.9999999999999998e-26  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_0049  response regulator receiver protein  32.59 
 
 
226 aa  106  6e-22  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1048  response regulator receiver protein  29.78 
 
 
814 aa  94  3e-18  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1085  putative two component, sigma54 specific, transcriptional regulator, Fis family  41.03 
 
 
445 aa  81.3  0.00000000000002  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0911  two component, sigma54 specific, Fis family transcriptional regulator  38.03 
 
 
456 aa  80.9  0.00000000000002  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1055  two component, sigma54 specific, Fis family transcriptional regulator  38.03 
 
 
456 aa  80.9  0.00000000000002  Methylobacillus flagellatus KT  Bacteria  normal  0.523432  normal 
 
 
-
 
NC_007517  Gmet_2453  two component, sigma54 specific, Fis family transcriptional regulator  39.32 
 
 
461 aa  80.9  0.00000000000003  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000196128  normal 
 
 
-
 
NC_010505  Mrad2831_3997  response regulator receiver protein  40.16 
 
 
121 aa  78.6  0.0000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0883649 
 
 
-
 
NC_003910  CPS_4272  sigma-54 dependent response regulator  38.98 
 
 
457 aa  77.4  0.0000000000003  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3651  two component, sigma54 specific, Fis family transcriptional regulator  38.66 
 
 
445 aa  76.6  0.0000000000005  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_3049  putative two component, sigma54 specific, transcriptional regulator, Fis family  38.98 
 
 
445 aa  76.3  0.0000000000007  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4648  response regulator receiver protein  30.05 
 
 
253 aa  76.3  0.0000000000007  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.485097  normal 
 
 
-
 
NC_010511  M446_2198  response regulator receiver protein  38.71 
 
 
127 aa  76.3  0.0000000000008  Methylobacterium sp. 4-46  Bacteria  normal  0.16592  normal  0.62826 
 
 
-
 
NC_010557  BamMC406_5980  response regulator receiver modulated metal dependent phosphohydrolase  39.17 
 
 
469 aa  75.5  0.000000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011206  Lferr_0608  two component, sigma54 specific, transcriptional regulator, Fis family  35.54 
 
 
461 aa  75.9  0.000000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4550  response regulator receiver domain-containing protein  37.6 
 
 
451 aa  75.1  0.000000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.01769  normal 
 
 
-
 
NC_013421  Pecwa_1226  putative two component, sigma54 specific, transcriptional regulator, Fis family  38.14 
 
 
445 aa  75.1  0.000000000001  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2403  two component, sigma54 specific, Fis family transcriptional regulator  37.61 
 
 
467 aa  75.1  0.000000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.32958 
 
 
-
 
NC_010725  Mpop_2980  response regulator receiver protein  39.34 
 
 
121 aa  75.5  0.000000000001  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_008392  Bamb_6276  response regulator receiver modulated metal dependent phosphohydrolase  39.17 
 
 
469 aa  75.5  0.000000000001  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_0447  sigma-54 dependent DNA-binding response regulator  35.54 
 
 
461 aa  75.9  0.000000000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1259  two component, sigma54 specific, Fis family transcriptional regulator  38.14 
 
 
445 aa  74.3  0.000000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1989  sigma-54 dependent DNA-binding response regulator  39.81 
 
 
444 aa  74.3  0.000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  0.519588  n/a   
 
 
-
 
NC_011757  Mchl_3086  response regulator receiver protein  39.34 
 
 
121 aa  75.1  0.000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.342425  normal 
 
 
-
 
NC_013223  Dret_1184  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  34.78 
 
 
738 aa  74.3  0.000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2034  two component, sigma54 specific, Fis family transcriptional regulator  37.5 
 
 
449 aa  75.1  0.000000000002  Geobacter metallireducens GS-15  Bacteria  normal  0.0792682  normal  0.101595 
 
 
-
 
NC_010172  Mext_2860  response regulator receiver  39.34 
 
 
121 aa  75.1  0.000000000002  Methylobacterium extorquens PA1  Bacteria  normal  0.388237  normal 
 
 
-
 
NC_009708  YpsIP31758_1152  sigma-54 dependent DNA-binding response regulator  38.14 
 
 
445 aa  74.3  0.000000000002  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_011728  BbuZS7_0791  acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor)  28.11 
 
 
451 aa  74.3  0.000000000002  Borrelia burgdorferi ZS7  Bacteria  normal  0.261898  n/a   
 
 
-
 
NC_009253  Dred_2001  two component, sigma54 specific, Fis family transcriptional regulator  33.87 
 
 
454 aa  75.1  0.000000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3629  two-component system response regulator  38.14 
 
 
445 aa  74.3  0.000000000002  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_2338  GAF sensor-containing adenylate/guanylate cyclase  32.85 
 
 
1180 aa  74.3  0.000000000003  'Nostoc azollae' 0708  Bacteria  normal  0.0263037  n/a   
 
 
-
 
NC_006368  lpp1726  hypothetical protein  32.72 
 
 
437 aa  73.6  0.000000000004  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1726  hypothetical protein  32.72 
 
 
437 aa  73.6  0.000000000004  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_011769  DvMF_0706  response regulator receiver protein  33.04 
 
 
133 aa  73.9  0.000000000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.381505 
 
 
-
 
NC_011145  AnaeK_0879  two component, sigma54 specific, transcriptional regulator, Fis family  37.41 
 
 
466 aa  73.6  0.000000000004  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  32.92 
 
 
448 aa  73.6  0.000000000004  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_2795  two component transcriptional regulator  37.61 
 
 
266 aa  73.9  0.000000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA0261  response regulator  39.32 
 
 
439 aa  73.6  0.000000000005  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0923  response regulator  39.32 
 
 
481 aa  73.2  0.000000000005  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0757  response regulator/HD domain-containing protein  39.32 
 
 
481 aa  73.2  0.000000000005  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2689  response regulator  39.32 
 
 
481 aa  73.2  0.000000000005  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I0615  response regulator  38.46 
 
 
484 aa  73.6  0.000000000005  Burkholderia thailandensis E264  Bacteria  normal  0.177724  n/a   
 
 
-
 
NC_011891  A2cp1_0883  two component, sigma54 specific, transcriptional regulator, Fis family  37.41 
 
 
466 aa  73.6  0.000000000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.879866  n/a   
 
 
-
 
NC_009080  BMA10247_2469  response regulator  39.32 
 
 
481 aa  73.2  0.000000000005  Burkholderia mallei NCTC 10247  Bacteria  normal  0.129941  n/a   
 
 
-
 
NC_008836  BMA10229_A2388  response regulator  39.32 
 
 
481 aa  73.2  0.000000000005  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0654  response regulator receiver protein  34.48 
 
 
413 aa  73.6  0.000000000005  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.113697  normal 
 
 
-
 
NC_002620  TC0753  sigma-54 dependent response regulator  35.59 
 
 
387 aa  73.2  0.000000000006  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0941  response regulator receiver  37.01 
 
 
125 aa  73.2  0.000000000006  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_3458  multi-sensor signal transduction histidine kinase  33.58 
 
 
958 aa  72.8  0.000000000007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2768  putative two component, sigma54 specific, transcriptional regulator, Fis family  37.61 
 
 
445 aa  72.8  0.000000000008  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0324  response regulator receiver domain-containing protein  36.28 
 
 
127 aa  72.8  0.000000000008  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.581793  n/a   
 
 
-
 
NC_009943  Dole_2739  two component, sigma54 specific, Fis family transcriptional regulator  34.48 
 
 
451 aa  72.8  0.000000000008  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.693002  n/a   
 
 
-
 
NC_011149  SeAg_B2721  sigma-54 dependent transcriptional regulator/response regulator  32.4 
 
 
445 aa  72.8  0.000000000009  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2804  transcriptional regulatory protein ZraR  32.77 
 
 
445 aa  72.4  0.00000000001  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7223  response regulator receiver modulated metal dependent phosphohydrolase  36.75 
 
 
473 aa  72  0.00000000001  Burkholderia sp. 383  Bacteria  normal  0.58817  normal  0.218696 
 
 
-
 
NC_011769  DvMF_1772  response regulator receiver protein  33.05 
 
 
151 aa  72.4  0.00000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009485  BBta_1174  putative two-component response regulator  36.29 
 
 
126 aa  72.4  0.00000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.289144  normal  0.876478 
 
 
-
 
NC_011080  SNSL254_A2763  transcriptional regulator ZraR  32.77 
 
 
445 aa  72.4  0.00000000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_2258  two component, sigma54 specific, Fis family transcriptional regulator  36.75 
 
 
468 aa  72  0.00000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.428008  normal  0.0222917 
 
 
-
 
NC_011083  SeHA_C2825  transcriptional regulator ZraR  32.77 
 
 
445 aa  72.4  0.00000000001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.479389  normal 
 
 
-
 
NC_011205  SeD_A2938  transcriptional regulator ZraR  32.77 
 
 
445 aa  72.4  0.00000000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0605  response regulator  35.83 
 
 
536 aa  72  0.00000000001  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  35.9 
 
 
460 aa  71.6  0.00000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_0513  multi-sensor hybrid histidine kinase  36.07 
 
 
803 aa  71.6  0.00000000002  Sphingomonas wittichii RW1  Bacteria  normal  0.883754  normal 
 
 
-
 
NC_009253  Dred_1312  two component, sigma54 specific, Fis family transcriptional regulator  36.13 
 
 
455 aa  71.6  0.00000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  0.502008  n/a   
 
 
-
 
NC_009512  Pput_2745  response regulator receiver protein  38.21 
 
 
456 aa  71.2  0.00000000002  Pseudomonas putida F1  Bacteria  normal  0.862781  normal 
 
 
-
 
NC_009943  Dole_2335  response regulator receiver protein  33.62 
 
 
411 aa  71.2  0.00000000002  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.0000388714  n/a   
 
 
-
 
NC_012791  Vapar_0965  putative two component, sigma54 specific, transcriptional regulator, Fis family  37.82 
 
 
462 aa  71.6  0.00000000002  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3584  nitrogen metabolism transcriptional regulator, NtrC, Fis family  33.61 
 
 
494 aa  71.2  0.00000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.914816 
 
 
-
 
NC_002947  PP_2942  response regulator  38.21 
 
 
456 aa  70.9  0.00000000003  Pseudomonas putida KT2440  Bacteria  normal  0.714666  normal  0.271158 
 
 
-
 
NC_014230  CA2559_01515  rteB, two-component system response regulator  33.33 
 
 
478 aa  70.9  0.00000000003  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.0452402  n/a   
 
 
-
 
NC_009441  Fjoh_5047  two component, sigma54 specific, Fis family transcriptional regulator  28.47 
 
 
387 aa  70.9  0.00000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0897789  n/a   
 
 
-
 
NC_011894  Mnod_1157  response regulator receiver protein  37.1 
 
 
127 aa  70.9  0.00000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.116971  n/a   
 
 
-
 
NC_009074  BURPS668_0745  response regulator/HD domain-containing protein  38.46 
 
 
481 aa  70.9  0.00000000003  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_5220  response regulator receiver protein  36.72 
 
 
126 aa  70.9  0.00000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.472283  n/a   
 
 
-
 
NC_007963  Csal_0717  two component, sigma54 specific, Fis family transcriptional regulator  35.29 
 
 
466 aa  71.2  0.00000000003  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  36.13 
 
 
470 aa  70.5  0.00000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_011146  Gbem_2269  two component, sigma54 specific, transcriptional regulator, Fis family  36 
 
 
456 aa  70.9  0.00000000003  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  35.04 
 
 
463 aa  70.9  0.00000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
NC_003910  CPS_1939  sensory box sensor histidine kinase/response regulator  34.13 
 
 
1328 aa  70.1  0.00000000004  Colwellia psychrerythraea 34H  Bacteria  normal  0.282055  n/a   
 
 
-
 
NC_007298  Daro_3758  helix-turn-helix, Fis-type:nitrogen regulation protein NR(I)  36.36 
 
 
476 aa  70.5  0.00000000004  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.349567 
 
 
-
 
NC_009523  RoseRS_1088  two component transcriptional regulator  36.75 
 
 
264 aa  70.5  0.00000000004  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.237646 
 
 
-
 
NC_009943  Dole_1347  response regulator receiver protein  31.76 
 
 
688 aa  70.5  0.00000000004  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0776  sigma-54 dependent DNA-binding response regulator  35 
 
 
465 aa  70.1  0.00000000005  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2310  two component, sigma54 specific, transcriptional regulator, Fis family  36.97 
 
 
469 aa  70.1  0.00000000005  Anaeromyxobacter sp. K  Bacteria  normal  0.294968  n/a   
 
 
-
 
NC_007650  BTH_II0731  response regulator  35.9 
 
 
476 aa  70.1  0.00000000005  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0504  two component, sigma54 specific, Fis family transcriptional regulator  37.61 
 
 
443 aa  70.1  0.00000000005  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0833  two component, sigma54 specific, Fis family transcriptional regulator  35.97 
 
 
466 aa  70.1  0.00000000005  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.96038  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  34.75 
 
 
473 aa  70.1  0.00000000005  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0621  two component, sigma54 specific, Fis family transcriptional regulator  30.77 
 
 
472 aa  70.1  0.00000000005  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0872  two component, sigma54 specific, Fis family transcriptional regulator  36.13 
 
 
471 aa  70.1  0.00000000006  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0650247 
 
 
-
 
NC_007517  Gmet_2924  two component, sigma54 specific, Fis family transcriptional regulator  32.2 
 
 
470 aa  69.7  0.00000000006  Geobacter metallireducens GS-15  Bacteria  normal  0.777319  hitchhiker  0.0000000000564278 
 
 
-
 
NC_008789  Hhal_1340  two component, sigma54 specific, Fis family transcriptional regulator  36.44 
 
 
457 aa  69.7  0.00000000006  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_4494  LytTr DNA-binding region  37.7 
 
 
250 aa  69.7  0.00000000006  Salinispora tropica CNB-440  Bacteria  normal  0.0706486  normal  0.304613 
 
 
-
 
NC_011891  A2cp1_2398  two component, sigma54 specific, transcriptional regulator, Fis family  36.97 
 
 
469 aa  70.1  0.00000000006  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.313034  n/a   
 
 
-
 
NC_009943  Dole_1348  response regulator receiver protein  36.52 
 
 
173 aa  70.1  0.00000000006  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
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