182 homologs were found in PanDaTox collection
for query gene Strop_2722 on replicon NC_009380
Organism: Salinispora tropica CNB-440



Page 1 of 2    << first  < prev  1  2    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009380  Strop_2722  hypothetical protein  100 
 
 
446 aa  920    Salinispora tropica CNB-440  Bacteria  normal  0.107011  normal  0.632165 
 
 
-
 
NC_013595  Sros_6965  ABC-type sugar transport system periplasmic component-like protein  48.76 
 
 
475 aa  435  1e-121  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.292148 
 
 
-
 
NC_013947  Snas_1828  extracellular solute-binding protein family 1  42.07 
 
 
455 aa  379  1e-104  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.218215 
 
 
-
 
NC_010483  TRQ2_1696  extracellular solute-binding protein  28.3 
 
 
436 aa  178  2e-43  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00506774  n/a   
 
 
-
 
NC_013202  Hmuk_0332  extracellular solute-binding protein family 1  29.52 
 
 
468 aa  174  1.9999999999999998e-42  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_008010  Dgeo_2662  extracellular solute-binding protein  28.64 
 
 
433 aa  160  3e-38  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.377519  n/a   
 
 
-
 
NC_009616  Tmel_0753  extracellular solute-binding protein  26.08 
 
 
437 aa  144  4e-33  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0289  extracellular solute-binding protein  24.7 
 
 
437 aa  134  3.9999999999999996e-30  Petrotoga mobilis SJ95  Bacteria  unclonable  0.00000019091  n/a   
 
 
-
 
NC_010003  Pmob_0721  extracellular solute-binding protein  24.47 
 
 
437 aa  129  8.000000000000001e-29  Petrotoga mobilis SJ95  Bacteria  normal  0.540981  n/a   
 
 
-
 
NC_012793  GWCH70_1392  extracellular solute-binding protein family 1  25.42 
 
 
445 aa  129  1.0000000000000001e-28  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2738  extracellular solute-binding protein  26.88 
 
 
438 aa  122  1.9999999999999998e-26  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.345118  n/a   
 
 
-
 
NC_009074  BURPS668_3697  glycerol-3-phosphate transporter periplasmic binding protein  27.05 
 
 
441 aa  121  3e-26  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_0323  glycerol-3-phosphate transporter periplasmic binding protein  26.33 
 
 
444 aa  120  3.9999999999999996e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.839712 
 
 
-
 
NC_008390  Bamb_0314  glycerol-3-phosphate transporter periplasmic binding protein  26.33 
 
 
444 aa  120  4.9999999999999996e-26  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_2515  methyl-accepting chemotaxis sensory transducer  27.03 
 
 
833 aa  120  4.9999999999999996e-26  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.0891124 
 
 
-
 
NC_006348  BMA2744  glycerol-3-phosphate transporter periplasmic binding protein  26.81 
 
 
441 aa  118  1.9999999999999998e-25  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3726  glycerol-3-phosphate transporter periplasmic binding protein  26.81 
 
 
441 aa  118  1.9999999999999998e-25  Burkholderia pseudomallei 1710b  Bacteria  normal  0.268589  n/a   
 
 
-
 
NC_014212  Mesil_0955  extracellular solute-binding protein family 1  28.35 
 
 
437 aa  118  1.9999999999999998e-25  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.152307 
 
 
-
 
NC_008785  BMASAVP1_A3209  glycerol-3-phosphate transporter periplasmic binding protein  26.81 
 
 
441 aa  118  1.9999999999999998e-25  Burkholderia mallei SAVP1  Bacteria  normal  0.0248662  n/a   
 
 
-
 
NC_008836  BMA10229_A1760  glycerol-3-phosphate transporter periplasmic binding protein  26.81 
 
 
441 aa  118  1.9999999999999998e-25  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3755  glycerol-3-phosphate transporter periplasmic binding protein  26.81 
 
 
441 aa  118  1.9999999999999998e-25  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2794  glycerol-3-phosphate transporter periplasmic binding protein  26.81 
 
 
441 aa  118  1.9999999999999998e-25  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3492  glycerol-3-phosphate transporter periplasmic binding protein  25.85 
 
 
444 aa  117  5e-25  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_0298  glycerol-3-phosphate transporter periplasmic binding protein  25.85 
 
 
444 aa  117  6e-25  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_3856  glycerol-3-phosphate transporter periplasmic binding protein  24.88 
 
 
440 aa  116  8.999999999999998e-25  Enterobacter sp. 638  Bacteria  normal  normal  0.64819 
 
 
-
 
NC_012791  Vapar_4134  extracellular solute-binding protein family 1  25.36 
 
 
437 aa  115  2.0000000000000002e-24  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I3021  glycerol-3-phosphate transporter periplasmic binding protein  26.33 
 
 
441 aa  115  2.0000000000000002e-24  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_2712  glycerol-3-phosphate transporter periplasmic binding protein  25.72 
 
 
443 aa  114  3e-24  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.290307  n/a   
 
 
-
 
NC_008542  Bcen2424_0395  glycerol-3-phosphate transporter periplasmic binding protein  25.72 
 
 
443 aa  114  3e-24  Burkholderia cenocepacia HI2424  Bacteria  normal  0.954301  n/a   
 
 
-
 
NC_010508  Bcenmc03_0374  glycerol-3-phosphate transporter periplasmic binding protein  25.72 
 
 
444 aa  114  3e-24  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E3870  glycerol-3-phosphate transporter periplasmic binding protein  24.58 
 
 
438 aa  113  6e-24  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0322  extracellular solute-binding protein family 1  27.91 
 
 
435 aa  112  2.0000000000000002e-23  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03302  glycerol-3-phosphate transporter subunit  24.34 
 
 
438 aa  111  3e-23  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0262  extracellular solute-binding protein family 1  24.34 
 
 
438 aa  111  3e-23  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4767  glycerol-3-phosphate transporter periplasmic binding protein  24.34 
 
 
438 aa  111  3e-23  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.552805 
 
 
-
 
NC_012892  B21_03255  hypothetical protein  24.34 
 
 
438 aa  111  3e-23  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3650  glycerol-3-phosphate transporter periplasmic binding protein  24.34 
 
 
438 aa  111  3e-23  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3931  glycerol-3-phosphate transporter periplasmic binding protein  24.34 
 
 
438 aa  111  3e-23  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0263  glycerol-3-phosphate transporter periplasmic binding protein  24.34 
 
 
438 aa  111  3e-23  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_4045  glycerol-3-phosphate transporter periplasmic binding protein  24.88 
 
 
439 aa  110  4.0000000000000004e-23  Dickeya zeae Ech1591  Bacteria  normal  0.661181  n/a   
 
 
-
 
NC_009654  Mmwyl1_0604  extracellular solute-binding protein  25.18 
 
 
433 aa  110  7.000000000000001e-23  Marinomonas sp. MWYL1  Bacteria  normal  hitchhiker  0.00010036 
 
 
-
 
NC_011094  SeSA_A3748  glycerol-3-phosphate transporter periplasmic binding protein  23.74 
 
 
438 aa  110  7.000000000000001e-23  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3759  glycerol-3-phosphate transporter periplasmic binding protein  23.91 
 
 
438 aa  109  8.000000000000001e-23  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C3869  glycerol-3-phosphate transporter periplasmic binding protein  23.91 
 
 
438 aa  109  8.000000000000001e-23  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A3826  glycerol-3-phosphate transporter periplasmic binding protein  23.91 
 
 
438 aa  109  8.000000000000001e-23  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A3928  glycerol-3-phosphate transporter periplasmic binding protein  23.91 
 
 
438 aa  109  1e-22  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_0117  glycerol-3-phosphate transporter periplasmic binding protein  24.4 
 
 
444 aa  108  1e-22  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3732  glycerol-3-phosphate transporter periplasmic binding protein  24.1 
 
 
438 aa  109  1e-22  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_3650  extracellular solute-binding protein  24.4 
 
 
436 aa  107  5e-22  Acidovorax citrulli AAC00-1  Bacteria  normal  0.144474  normal 
 
 
-
 
NC_007951  Bxe_A0448  glycerol-3-phosphate transporter periplasmic binding protein  23.91 
 
 
441 aa  107  6e-22  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3509  glycerol-3-phosphate transporter periplasmic binding protein  23.67 
 
 
441 aa  106  9e-22  Burkholderia phytofirmans PsJN  Bacteria  normal  0.839022  normal  0.0272066 
 
 
-
 
NC_005945  BAS0538  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  26.33 
 
 
458 aa  105  2e-21  Bacillus anthracis str. Sterne  Bacteria  normal  0.406699  n/a   
 
 
-
 
NC_005957  BT9727_0480  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  26.33 
 
 
458 aa  105  2e-21  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0569  glycerol-3-phosphate ABC transporter glycerol-3-phosphate-binding protein  26.33 
 
 
458 aa  105  2e-21  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0625  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  26.33 
 
 
458 aa  105  2e-21  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_003909  BCE_0632  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein, putative  26.02 
 
 
458 aa  104  3e-21  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2709  glycerol-3-phosphate transporter periplasmic binding protein  23.8 
 
 
441 aa  104  3e-21  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A0606  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  23.15 
 
 
458 aa  104  3e-21  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0482  glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  26.02 
 
 
458 aa  104  4e-21  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0111  putative glycerol 3-phosphate transport protein, ugpB-like protein  24.51 
 
 
438 aa  103  5e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.877787 
 
 
-
 
NC_012880  Dd703_3861  glycerol-3-phosphate transporter periplasmic binding protein  24.15 
 
 
439 aa  103  6e-21  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1155  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  24.28 
 
 
434 aa  103  7e-21  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4733  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  22.92 
 
 
458 aa  103  8e-21  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A0700  putative glycerol-3-phosphate ABC transporter, glycerol-3-phosphate-binding protein  26.02 
 
 
458 aa  102  1e-20  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0483  extracellular solute-binding protein  26.02 
 
 
458 aa  102  1e-20  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2052  extracellular solute-binding protein  25.67 
 
 
438 aa  101  2e-20  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0125  glycerol-3-phosphate transporter periplasmic binding protein  23.98 
 
 
444 aa  102  2e-20  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0234  glycerol-3-phosphate transporter periplasmic binding protein  24.64 
 
 
439 aa  100  4e-20  Serratia proteamaculans 568  Bacteria  normal  normal  0.500336 
 
 
-
 
NC_010682  Rpic_1092  extracellular solute-binding protein family 1  23.98 
 
 
438 aa  100  6e-20  Ralstonia pickettii 12J  Bacteria  normal  0.0503452  normal 
 
 
-
 
NC_011992  Dtpsy_0791  extracellular solute-binding protein family 1  24.88 
 
 
437 aa  100  7e-20  Acidovorax ebreus TPSY  Bacteria  normal  0.721808  n/a   
 
 
-
 
NC_012856  Rpic12D_1185  extracellular solute-binding protein family 1  23.98 
 
 
438 aa  99.8  8e-20  Ralstonia pickettii 12D  Bacteria  normal  0.276437  normal 
 
 
-
 
NC_008782  Ajs_0862  extracellular solute-binding protein  24.88 
 
 
437 aa  99.8  1e-19  Acidovorax sp. JS42  Bacteria  normal  normal  0.597127 
 
 
-
 
NC_007948  Bpro_0857  extracellular solute-binding protein  23.49 
 
 
437 aa  98.6  2e-19  Polaromonas sp. JS666  Bacteria  normal  normal  0.221606 
 
 
-
 
NC_007973  Rmet_2055  extracellular solute-binding protein  23.43 
 
 
436 aa  98.2  2e-19  Cupriavidus metallidurans CH34  Bacteria  normal  0.822621  normal 
 
 
-
 
NC_008709  Ping_2093  glycerol-3-phosphate ABC transporter extracellular solute-binding family 1 protein  24.64 
 
 
435 aa  98.6  2e-19  Psychromonas ingrahamii 37  Bacteria  normal  0.107678  normal  0.487826 
 
 
-
 
NC_013411  GYMC61_2845  extracellular solute-binding protein family 1  25.25 
 
 
439 aa  98.6  2e-19  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009708  YpsIP31758_0256  glycerol-3-phosphate transporter periplasmic binding protein  23.43 
 
 
439 aa  98.6  2e-19  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3962  glycerol-3-phosphate transporter periplasmic binding protein  23.43 
 
 
439 aa  98.6  2e-19  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1264  glycerol-3-phosphate-binding periplasmic lipoprotein signal peptide  24.7 
 
 
438 aa  96.7  7e-19  Ralstonia solanacearum GMI1000  Bacteria  normal  0.400828  normal  0.517414 
 
 
-
 
NC_009784  VIBHAR_06396  ABC-type sugar transport system periplasmic protein  23.57 
 
 
435 aa  96.3  1e-18  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010159  YpAngola_A3655  glycerol-3-phosphate transporter periplasmic binding protein  23.19 
 
 
439 aa  95.9  1e-18  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_2075  extracellular solute-binding protein  27.07 
 
 
433 aa  95.1  2e-18  Jannaschia sp. CCS1  Bacteria  normal  0.114781  normal  0.235936 
 
 
-
 
NC_011004  Rpal_0060  extracellular solute-binding protein family 1  23.86 
 
 
442 aa  95.1  2e-18  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.700837  n/a   
 
 
-
 
NC_008044  TM1040_0849  extracellular solute-binding protein  23.17 
 
 
434 aa  94  5e-18  Ruegeria sp. TM1040  Bacteria  normal  0.0177782  normal 
 
 
-
 
NC_007908  Rfer_1287  extracellular solute-binding protein  23.67 
 
 
435 aa  93.6  6e-18  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5465  extracellular solute-binding protein  25.64 
 
 
434 aa  93.6  6e-18  Delftia acidovorans SPH-1  Bacteria  normal  0.355429  normal 
 
 
-
 
NC_013171  Apre_0061  extracellular solute-binding protein family 1  25.23 
 
 
462 aa  90.5  5e-17  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0186  extracellular solute-binding protein  22.65 
 
 
441 aa  89.7  9e-17  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0646  extracellular solute-binding protein  23.86 
 
 
441 aa  89.4  1e-16  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.206924 
 
 
-
 
NC_009484  Acry_3003  extracellular solute-binding protein  23.61 
 
 
442 aa  87.8  4e-16  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_4373  extracellular solute-binding protein  24.76 
 
 
437 aa  87.4  5e-16  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.104197  normal 
 
 
-
 
NC_009952  Dshi_2014  sn-glycerol-3-phosphate-binding periplasmic protein ugpB precursor  24.34 
 
 
433 aa  87  6e-16  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.167012  hitchhiker  0.0071297 
 
 
-
 
NC_011004  Rpal_5274  extracellular solute-binding protein family 1  25.78 
 
 
442 aa  86.3  0.000000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_0097  extracellular solute-binding protein  25.55 
 
 
434 aa  86.3  0.000000000000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4449  extracellular solute-binding protein  24.94 
 
 
446 aa  86.3  0.000000000000001  Xanthobacter autotrophicus Py2  Bacteria  decreased coverage  0.00843107  normal  0.115126 
 
 
-
 
NC_007925  RPC_0404  extracellular solute-binding protein  23.24 
 
 
438 aa  85.1  0.000000000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0714  ABC transporter substrate-binding protein  27.1 
 
 
429 aa  84.7  0.000000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0354  ABC transporter substrate binding protein (sn-glycerol 3-phosphate)  25.23 
 
 
432 aa  84.3  0.000000000000004  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008783  BARBAKC583_0349  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  22.65 
 
 
441 aa  84  0.000000000000005  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_3686  extracellular solute-binding protein  25.86 
 
 
460 aa  81.6  0.00000000000002  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 2    << first  < prev  1  2    next >  last >>