| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0354 |
|---|
| Symbol | ugpA |
|---|
| ID | 7387801 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 304331 |
|---|
| End bp | 305629 |
|---|
| Gene Length | 1299 bp |
|---|
| Protein Length | 432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643650027 |
|---|
| Product | ABC transporter substrate binding protein (sn-glycerol 3-phosphate) |
|---|
| Protein accession | YP_002548242 |
|---|
| Protein GI | 222147285 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAAA AGCTTTCGAT GGCGGCGCTG GCCGTGACCG TATCGACCAC ATCATCATTT
GCCGCAACCA ACATCAGCTG GTGGCACGGC ATGGGTGGCC GCAACGGCGA AGTCATCAAT
GAATTGTCGC AGAAGTTCAA CGCTGCCCAA GGCGAATGCG TTTTGACGCC TGTTTCCAAG
GGCTCCTACG AAGAAGCGCT GGCCGCTGGT ATCGCTGCTT TCCGCTCGCA CGATCAGCCC
AACATTCTTC AGGTGTTTGA TGCTGGTTCT GCCACGATCA TCAATGCCAA GGGTGCCACT
ATTCCCGCAG AAGATCTGCT GTTGAAGGCC GGTTACAAGT TTGACCGCAG TGCCTTCATT
GAAGGTGTGC GCTACTTCTA CGCCGACAAG ACCGGCAAGT TCGTCGGCAT GCCGTTCAAC
TCGTCGGCGC CTATCCTCTA CATCAACACC GAAGCCCTGA AAAAGGCTGG CGTTGAAGCA
CCAAAGACCT GGGAAGAGTT TGAAGCCATT GCCCCAAAGC TGAAGGCTGC CGGTTATATT
CCGCTGGTTC AGTCGCAGTT GACCTGGGAA TTCACCGAGA ATTTCTTCTC GCGCAACAAC
ATCCAGTTCG CCTCCAACAA CAATGGTTAT GACGGTCTGG CTGGCACCAC CATCAATGTC
ACCGATCCAA ACCACGTGAT GATGTATGAC AAGCTGAAGG CCTGGAAGGA TGAAGGTTAC
TTCGCCTATT ACGGTGCAGG CTGGAACGAC AACCAGAAGC CTTTTGAAGA GGGCAAGGTT
GCGCTGTGGG TTGGCTCTTC CGGCTCGTTC GGTGGTTTGC AGAAGACGGC TTCCATGCCA
TTTTCCGCTA CCTTCCTGCC CTACTGGGGC TCCATCAAGG GTGCGGGCGT GCATAGCTTT
ATCGGCGGCG CTGCCCTTTA TGCCATGTCC GGCAAGACGG AAGCTGAAAA CAAGTGCACA
GCCGCTTTCT TCAACTTCCT GACTCAGCCT GAAATCCAGA AATTCTACCA TCAGGCCACC
GGTTATGTTG CCATCACCAC GGCGGCTTAC GAACTGGCCA AGAAGGAAGG CTATTACGAA
AAGGCTCCTG TTGCCGAAGT GGGCATCAAG CAGCTTCAGC TTCCCGGCGG CGAATGGGAC
AAGGGCTATC GCCTCGGCTT CTACCCGCAG ATCCGCTCTG TGATGGAACG CGAATACAAC
AAGATCTTCT CTGGTGAAAC CACGCCAAAG GCTGCGATGG AAACCATCAA GAAGGAAGCT
GACGAAATCC TGGCACGCTT TGCCAAGACC GCAGGCTGA
|
|---|
| Protein sequence | MFKKLSMAAL AVTVSTTSSF AATNISWWHG MGGRNGEVIN ELSQKFNAAQ GECVLTPVSK
GSYEEALAAG IAAFRSHDQP NILQVFDAGS ATIINAKGAT IPAEDLLLKA GYKFDRSAFI
EGVRYFYADK TGKFVGMPFN SSAPILYINT EALKKAGVEA PKTWEEFEAI APKLKAAGYI
PLVQSQLTWE FTENFFSRNN IQFASNNNGY DGLAGTTINV TDPNHVMMYD KLKAWKDEGY
FAYYGAGWND NQKPFEEGKV ALWVGSSGSF GGLQKTASMP FSATFLPYWG SIKGAGVHSF
IGGAALYAMS GKTEAENKCT AAFFNFLTQP EIQKFYHQAT GYVAITTAAY ELAKKEGYYE
KAPVAEVGIK QLQLPGGEWD KGYRLGFYPQ IRSVMEREYN KIFSGETTPK AAMETIKKEA
DEILARFAKT AG
|
|---|
| |