| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2014 |
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| Symbol | ugpB1 |
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| ID | 5713009 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2133086 |
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| End bp | 2134387 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641267938 |
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| Product | sn-glycerol-3-phosphate-binding periplasmic protein ugpB precursor |
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| Protein accession | YP_001533354 |
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| Protein GI | 159044560 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.167012 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.0071297 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATATA CCATTTCCAC CATCGCAACG CTGGCGGTGC TCGGCTCGGC GCAGAGCGCG
CTGGCACAGA CCGAGATCGA GTTCTGGCAT GCCTTCACCG GGCGTCTGGG CGAGCTTGTG
GCCGAGCAGG TCGACACGTT CAACGCCAGC CAGGACGAGT TCGTGGTCGT CCAGAGCCAC
AAGGGCAACT ATTCCGAGAC CCTGAATGCC GGGATCGCGG CCTTCCGCGC GGGTGAGCAG
CCCCATATCC TGATGGTGTT CGAAGTGGGC ACCGCCACCA TGATGGCTGC ACAGGGGGCG
ATCCGGCCGG TGTTCGAGGT GATGGGCGAC GGGTTCGACC AGTCGAAATA CATCGGCTCG
GTGAAGGGCT ACTATACCTC GACCGACGGC AACATGCTGT CACTGCCCTA TAACTCGTCC
ACGCCGGTTC TGTGGGTGAA CCGTGACATG CTGTCGGAGG CCGGGATCGA CCCGGACACG
GATCTGTCAA CCTGGGAGCA GGTCGGCGAG GTTCTGGACC AGCTGGCCGC GGCGGGCGTC
GAGTGCCCGA TGACCACCGC CTGGCAGAGC TGGATCCACC TGGAAAACTT CTCGGCCTAT
CATGACGTGC CGTTTGCGAC CCAGGAGAAC GGGTTTGCCG GGGCCGACAC GGAGCTGGCC
TTCAACAGCC CCGCACAGGT CGCGCATATC TCGGCCATGG GCAAATGGGC CGAAGAGGGC
AAGTTCATCT ATGCCGGCCG GCGCAACGAG GGCGGGGCCA ATTTCCGCGC GGGCGAATGC
GCGCTCTTCA CCGAATCCTC CGCCGGGTAT GCCGGGATCA ATGCGGAGGC CGAGTTCGAA
TTCGAAGTGC GGCCCCTGCC CTATTGGACG GCGGTGGCGG ACGACCCGCA GAACACCATC
ATCGGGGGCG CGTCGCTCTG GGTGATGGAG GGGCACGAGG CTGAGGAGTA TGCGGGCGTC
GCCGCCTTCA TGGATTTCCT GTCCAGCCCC GAGATCCAGG CCAAGTGGCA CCAGGATACC
GGGTACCTGC CGATCACGAC CGAGGCCGGG GAGTTGACCC GCGCGCAGGG CTTCTACGAG
GCGAACCCGG GCACGGACAT CGCGGTGATC CAGATGACCG CCAAGGAGCC GACCGCCAAT
TCCAAGGGTC TTCGCCTGGG GTCGTTCGAC CAGATCCGCG GGATCATCGA CGAAGAGCTT
GAAGCCGTGT GGTCCGGTGA CAAGGACGCG CAGGCCGCGC TGGACTCCGC CGTGGAGCGG
GGCAATGCCC TGCTGCGCCG GTTCGAGCAG GCGAGCCGCT AA
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| Protein sequence | MKYTISTIAT LAVLGSAQSA LAQTEIEFWH AFTGRLGELV AEQVDTFNAS QDEFVVVQSH
KGNYSETLNA GIAAFRAGEQ PHILMVFEVG TATMMAAQGA IRPVFEVMGD GFDQSKYIGS
VKGYYTSTDG NMLSLPYNSS TPVLWVNRDM LSEAGIDPDT DLSTWEQVGE VLDQLAAAGV
ECPMTTAWQS WIHLENFSAY HDVPFATQEN GFAGADTELA FNSPAQVAHI SAMGKWAEEG
KFIYAGRRNE GGANFRAGEC ALFTESSAGY AGINAEAEFE FEVRPLPYWT AVADDPQNTI
IGGASLWVME GHEAEEYAGV AAFMDFLSSP EIQAKWHQDT GYLPITTEAG ELTRAQGFYE
ANPGTDIAVI QMTAKEPTAN SKGLRLGSFD QIRGIIDEEL EAVWSGDKDA QAALDSAVER
GNALLRRFEQ ASR
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