More than 300 homologs were found in PanDaTox collection
for query gene Daci_5465 on replicon NC_010002
Organism: Delftia acidovorans SPH-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_4134  extracellular solute-binding protein family 1  71.88 
 
 
437 aa  643    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5465  extracellular solute-binding protein  100 
 
 
434 aa  902    Delftia acidovorans SPH-1  Bacteria  normal  0.355429  normal 
 
 
-
 
NC_008752  Aave_3650  extracellular solute-binding protein  71.81 
 
 
436 aa  638    Acidovorax citrulli AAC00-1  Bacteria  normal  0.144474  normal 
 
 
-
 
NC_008782  Ajs_0862  extracellular solute-binding protein  70.41 
 
 
437 aa  632  1e-180  Acidovorax sp. JS42  Bacteria  normal  normal  0.597127 
 
 
-
 
NC_011992  Dtpsy_0791  extracellular solute-binding protein family 1  69.95 
 
 
437 aa  629  1e-179  Acidovorax ebreus TPSY  Bacteria  normal  0.721808  n/a   
 
 
-
 
NC_007948  Bpro_0857  extracellular solute-binding protein  69.52 
 
 
437 aa  629  1e-179  Polaromonas sp. JS666  Bacteria  normal  normal  0.221606 
 
 
-
 
NC_007908  Rfer_1287  extracellular solute-binding protein  70.12 
 
 
435 aa  611  9.999999999999999e-175  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2055  extracellular solute-binding protein  65.09 
 
 
436 aa  573  1.0000000000000001e-162  Cupriavidus metallidurans CH34  Bacteria  normal  0.822621  normal 
 
 
-
 
NC_003295  RSc1264  glycerol-3-phosphate-binding periplasmic lipoprotein signal peptide  61.78 
 
 
438 aa  562  1.0000000000000001e-159  Ralstonia solanacearum GMI1000  Bacteria  normal  0.400828  normal  0.517414 
 
 
-
 
NC_012856  Rpic12D_1185  extracellular solute-binding protein family 1  64.07 
 
 
438 aa  562  1.0000000000000001e-159  Ralstonia pickettii 12D  Bacteria  normal  0.276437  normal 
 
 
-
 
NC_010682  Rpic_1092  extracellular solute-binding protein family 1  64.3 
 
 
438 aa  563  1.0000000000000001e-159  Ralstonia pickettii 12J  Bacteria  normal  0.0503452  normal 
 
 
-
 
NC_007347  Reut_A2052  extracellular solute-binding protein  63 
 
 
438 aa  560  1e-158  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0448  glycerol-3-phosphate transporter periplasmic binding protein  55.35 
 
 
441 aa  504  9.999999999999999e-143  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_2709  glycerol-3-phosphate transporter periplasmic binding protein  55.13 
 
 
441 aa  498  1e-140  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3509  glycerol-3-phosphate transporter periplasmic binding protein  54.73 
 
 
441 aa  500  1e-140  Burkholderia phytofirmans PsJN  Bacteria  normal  0.839022  normal  0.0272066 
 
 
-
 
NC_006348  BMA2744  glycerol-3-phosphate transporter periplasmic binding protein  54.02 
 
 
441 aa  482  1e-135  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3726  glycerol-3-phosphate transporter periplasmic binding protein  54.02 
 
 
441 aa  482  1e-135  Burkholderia pseudomallei 1710b  Bacteria  normal  0.268589  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3209  glycerol-3-phosphate transporter periplasmic binding protein  54.02 
 
 
441 aa  482  1e-135  Burkholderia mallei SAVP1  Bacteria  normal  0.0248662  n/a   
 
 
-
 
NC_008836  BMA10229_A1760  glycerol-3-phosphate transporter periplasmic binding protein  54.02 
 
 
441 aa  482  1e-135  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3697  glycerol-3-phosphate transporter periplasmic binding protein  55.4 
 
 
441 aa  481  1e-135  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3755  glycerol-3-phosphate transporter periplasmic binding protein  54.02 
 
 
441 aa  482  1e-135  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2794  glycerol-3-phosphate transporter periplasmic binding protein  54.02 
 
 
441 aa  482  1e-135  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I3021  glycerol-3-phosphate transporter periplasmic binding protein  55.4 
 
 
441 aa  479  1e-134  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0125  glycerol-3-phosphate transporter periplasmic binding protein  53.92 
 
 
444 aa  478  1e-134  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0374  glycerol-3-phosphate transporter periplasmic binding protein  55.53 
 
 
444 aa  480  1e-134  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2712  glycerol-3-phosphate transporter periplasmic binding protein  55.53 
 
 
443 aa  480  1e-134  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.290307  n/a   
 
 
-
 
NC_008542  Bcen2424_0395  glycerol-3-phosphate transporter periplasmic binding protein  55.53 
 
 
443 aa  480  1e-134  Burkholderia cenocepacia HI2424  Bacteria  normal  0.954301  n/a   
 
 
-
 
NC_012912  Dd1591_4045  glycerol-3-phosphate transporter periplasmic binding protein  55.8 
 
 
439 aa  476  1e-133  Dickeya zeae Ech1591  Bacteria  normal  0.661181  n/a   
 
 
-
 
NC_008390  Bamb_0314  glycerol-3-phosphate transporter periplasmic binding protein  53.12 
 
 
444 aa  476  1e-133  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0298  glycerol-3-phosphate transporter periplasmic binding protein  55.16 
 
 
444 aa  476  1e-133  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0323  glycerol-3-phosphate transporter periplasmic binding protein  53.35 
 
 
444 aa  477  1e-133  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.839712 
 
 
-
 
NC_004311  BRA0655  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  54.52 
 
 
433 aa  473  1e-132  Brucella suis 1330  Bacteria  normal  0.454035  n/a   
 
 
-
 
NC_011083  SeHA_C3869  glycerol-3-phosphate transporter periplasmic binding protein  54 
 
 
438 aa  473  1e-132  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A3492  glycerol-3-phosphate transporter periplasmic binding protein  54.57 
 
 
444 aa  472  1e-132  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A3928  glycerol-3-phosphate transporter periplasmic binding protein  53.78 
 
 
438 aa  471  1e-132  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A3826  glycerol-3-phosphate transporter periplasmic binding protein  54 
 
 
438 aa  473  1e-132  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3759  glycerol-3-phosphate transporter periplasmic binding protein  54 
 
 
438 aa  473  1e-132  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A3748  glycerol-3-phosphate transporter periplasmic binding protein  53.78 
 
 
438 aa  470  1.0000000000000001e-131  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03302  glycerol-3-phosphate transporter subunit  55.13 
 
 
438 aa  468  9.999999999999999e-131  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0262  extracellular solute-binding protein family 1  55.13 
 
 
438 aa  468  9.999999999999999e-131  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3861  glycerol-3-phosphate transporter periplasmic binding protein  55.07 
 
 
439 aa  467  9.999999999999999e-131  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E3870  glycerol-3-phosphate transporter periplasmic binding protein  54.89 
 
 
438 aa  466  9.999999999999999e-131  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3962  glycerol-3-phosphate transporter periplasmic binding protein  52.87 
 
 
439 aa  466  9.999999999999999e-131  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_0256  glycerol-3-phosphate transporter periplasmic binding protein  52.87 
 
 
439 aa  466  9.999999999999999e-131  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3650  glycerol-3-phosphate transporter periplasmic binding protein  55.13 
 
 
438 aa  468  9.999999999999999e-131  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03255  hypothetical protein  55.13 
 
 
438 aa  468  9.999999999999999e-131  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0263  glycerol-3-phosphate transporter periplasmic binding protein  55.13 
 
 
438 aa  468  9.999999999999999e-131  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_4767  glycerol-3-phosphate transporter periplasmic binding protein  55.13 
 
 
438 aa  468  9.999999999999999e-131  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.552805 
 
 
-
 
NC_009485  BBta_0111  putative glycerol 3-phosphate transport protein, ugpB-like protein  54.31 
 
 
438 aa  468  9.999999999999999e-131  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.877787 
 
 
-
 
NC_009504  BOV_A0617  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  53.81 
 
 
444 aa  466  9.999999999999999e-131  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0117  glycerol-3-phosphate transporter periplasmic binding protein  53.23 
 
 
444 aa  466  9.999999999999999e-131  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3732  glycerol-3-phosphate transporter periplasmic binding protein  54.92 
 
 
438 aa  464  9.999999999999999e-131  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3750  extracellular solute-binding protein  53.54 
 
 
433 aa  466  9.999999999999999e-131  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.316129  n/a   
 
 
-
 
NC_009801  EcE24377A_3931  glycerol-3-phosphate transporter periplasmic binding protein  54.89 
 
 
438 aa  467  9.999999999999999e-131  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3856  glycerol-3-phosphate transporter periplasmic binding protein  53.56 
 
 
440 aa  462  1e-129  Enterobacter sp. 638  Bacteria  normal  normal  0.64819 
 
 
-
 
NC_009832  Spro_0234  glycerol-3-phosphate transporter periplasmic binding protein  53.83 
 
 
439 aa  462  1e-129  Serratia proteamaculans 568  Bacteria  normal  normal  0.500336 
 
 
-
 
NC_010159  YpAngola_A3655  glycerol-3-phosphate transporter periplasmic binding protein  52.64 
 
 
439 aa  464  1e-129  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4664  extracellular solute-binding protein  52.37 
 
 
448 aa  458  9.999999999999999e-129  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.593429 
 
 
-
 
NC_007778  RPB_0646  extracellular solute-binding protein  53.25 
 
 
441 aa  456  1e-127  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.206924 
 
 
-
 
NC_007964  Nham_3686  extracellular solute-binding protein  50.93 
 
 
460 aa  457  1e-127  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4449  extracellular solute-binding protein  53.61 
 
 
446 aa  455  1e-127  Xanthobacter autotrophicus Py2  Bacteria  decreased coverage  0.00843107  normal  0.115126 
 
 
-
 
NC_009620  Smed_3710  extracellular solute-binding protein  50.12 
 
 
431 aa  456  1e-127  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00279907  normal 
 
 
-
 
NC_007925  RPC_0404  extracellular solute-binding protein  51.38 
 
 
438 aa  453  1.0000000000000001e-126  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1265  extracellular solute-binding protein family 1  51.87 
 
 
446 aa  454  1.0000000000000001e-126  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0604  extracellular solute-binding protein  51.38 
 
 
433 aa  449  1e-125  Marinomonas sp. MWYL1  Bacteria  normal  hitchhiker  0.00010036 
 
 
-
 
NC_007958  RPD_0186  extracellular solute-binding protein  52.05 
 
 
441 aa  446  1.0000000000000001e-124  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0060  extracellular solute-binding protein family 1  52.78 
 
 
442 aa  446  1.0000000000000001e-124  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.700837  n/a   
 
 
-
 
NC_010511  M446_1646  extracellular solute-binding protein  52.2 
 
 
440 aa  442  1e-123  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.143266 
 
 
-
 
NC_007925  RPC_0097  extracellular solute-binding protein  50.96 
 
 
434 aa  442  1e-123  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4373  extracellular solute-binding protein  50.59 
 
 
437 aa  439  9.999999999999999e-123  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.104197  normal 
 
 
-
 
NC_008044  TM1040_0849  extracellular solute-binding protein  49.76 
 
 
434 aa  439  9.999999999999999e-123  Ruegeria sp. TM1040  Bacteria  normal  0.0177782  normal 
 
 
-
 
NC_009952  Dshi_2014  sn-glycerol-3-phosphate-binding periplasmic protein ugpB precursor  50.82 
 
 
433 aa  435  1e-121  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.167012  hitchhiker  0.0071297 
 
 
-
 
NC_009485  BBta_0714  ABC transporter substrate-binding protein  50.96 
 
 
429 aa  437  1e-121  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5274  extracellular solute-binding protein family 1  48.96 
 
 
442 aa  437  1e-121  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06396  ABC-type sugar transport system periplasmic protein  51.67 
 
 
435 aa  425  1e-118  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008687  Pden_4190  extracellular solute-binding protein  48.34 
 
 
431 aa  427  1e-118  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.224886 
 
 
-
 
NC_007963  Csal_2738  extracellular solute-binding protein  47.94 
 
 
438 aa  422  1e-117  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.345118  n/a   
 
 
-
 
NC_007494  RSP_3290  ABC glycerol-3-phosphate transporter, periplasmic binding protein, UgpB  48.82 
 
 
431 aa  418  1e-116  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_2093  glycerol-3-phosphate ABC transporter extracellular solute-binding family 1 protein  49.54 
 
 
435 aa  420  1e-116  Psychromonas ingrahamii 37  Bacteria  normal  0.107678  normal  0.487826 
 
 
-
 
NC_009050  Rsph17029_4022  extracellular solute-binding protein  49.05 
 
 
431 aa  421  1e-116  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5204  extracellular solute-binding protein family 1  49.18 
 
 
440 aa  417  9.999999999999999e-116  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.306263 
 
 
-
 
NC_009429  Rsph17025_3285  hypothetical protein  48.28 
 
 
431 aa  412  1e-114  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.339711  normal 
 
 
-
 
NC_012917  PC1_1881  extracellular solute-binding protein family 1  47.73 
 
 
445 aa  401  9.999999999999999e-111  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.000340671  n/a   
 
 
-
 
NC_010505  Mrad2831_3282  extracellular solute-binding protein  45.32 
 
 
435 aa  395  1e-109  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2173  extracellular solute-binding protein family 1  47.26 
 
 
445 aa  396  1e-109  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.00822083  n/a   
 
 
-
 
NC_010511  M446_5587  extracellular solute-binding protein  43.6 
 
 
456 aa  385  1e-105  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008783  BARBAKC583_0349  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  42.99 
 
 
441 aa  376  1e-103  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_2075  extracellular solute-binding protein  40.72 
 
 
433 aa  329  6e-89  Jannaschia sp. CCS1  Bacteria  normal  0.114781  normal  0.235936 
 
 
-
 
NC_011989  Avi_0354  ABC transporter substrate binding protein (sn-glycerol 3-phosphate)  38.66 
 
 
432 aa  311  2e-83  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_3003  extracellular solute-binding protein  41.32 
 
 
442 aa  311  2e-83  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_012852  Rleg_6261  extracellular solute-binding protein family 1  39.47 
 
 
428 aa  304  2.0000000000000002e-81  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.689417 
 
 
-
 
NC_009457  VC0395_A1155  glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein  38.14 
 
 
434 aa  301  1e-80  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5507  ABC transporter substrate binding protein (glycerol 3-phosphate)  39.73 
 
 
447 aa  288  2e-76  Agrobacterium vitis S4  Bacteria  normal  0.0724145  n/a   
 
 
-
 
NC_012791  Vapar_4001  extracellular solute-binding protein family 1  36.16 
 
 
442 aa  285  1.0000000000000001e-75  Variovorax paradoxus S110  Bacteria  normal  0.131149  n/a   
 
 
-
 
NC_011369  Rleg2_2351  extracellular solute-binding protein family 1  37.5 
 
 
435 aa  257  3e-67  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0456809  normal  0.0969201 
 
 
-
 
NC_006369  lpl2199  hypothetical protein  35 
 
 
437 aa  248  2e-64  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp2227  hypothetical protein  34.76 
 
 
437 aa  243  3.9999999999999997e-63  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_012850  Rleg_3391  extracellular solute-binding protein family 1  36.73 
 
 
451 aa  239  5e-62  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.297931 
 
 
-
 
NC_011369  Rleg2_3119  extracellular solute-binding protein family 1  35.76 
 
 
451 aa  233  7.000000000000001e-60  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2845  extracellular solute-binding protein family 1  33.89 
 
 
439 aa  204  2e-51  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
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