| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0646 |
|---|
| Symbol | |
|---|
| ID | 3908571 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 731907 |
|---|
| End bp | 733232 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637882536 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_484268 |
|---|
| Protein GI | 86747772 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.206924 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTTTC GTTTGAAAGC TCTGACCGCT GCGATGGCGA CGACGATCGC CGCCACGCTG
CTGATCGCGC CGGCGCAGGC GGCGACCGAG ATCCAGTGGT GGCACGCCAT GACCGGCGGC
AACAACGATG TCGTGGTCAA GCTCGCCAAC GACTTCAACG CCGCGCAGAG CGACTACAAG
GTCGTCCCGA CCTACAAGGG CAGCTACGCC GACACCATGA ACGCCGGCAT CGCGGCGTTC
CGCGCCGGCA ACGCCCCGCA CATCATGCAG GTGTTCGAGG TCGGCACCGC CACCATGATG
GCGGCGACCG GCGCGGTGAA GCCGGTCTAC AAGCTGATGC AGGAGACCGG CGAGACATTC
GATCCCAACG CCTACCTGCC GGCGATCACC GGCTACTACT CGACCTCCAA GGGCGAGATG
CTGTCGTTCC CGTTCAACTC GTCCTCGACG GTGATGTGGG TCAATCTCGA CGCGCTCAAG
AAGGCCGGGA TCGCCGAAGT TCCGAAGACC TGGCCGCAGG TGTTCGAGGA TGCCAAGAAG
CTGAAGGCGG CCGGCTACGC CACCTGCGGC TTCTCCACCG CCTGGGTCAC TTGGGTCAAT
CTCGAGCAGC TCTCCGCCTG GCACAATGTA CCGCTGGCCA GCAAGGCCAA CGGCCTCGAC
GGCTTCGACA CCAAGCTGGA GTTCAACGGC CCGGTGCAGG TCAAGCATCT GGAGACGCTG
ATCGAGCTGC AGAAGGACAA GACCTACGAT TATTCCGGCC GCACCAACAC CGGCGAGGGC
CGCTTCACCT CCGGCGAGTG CCCGATCTTC CTGACCTCGT CGGGTTTCTT CGGCAACGTC
AAGTCTCAGG CCAAGTTCGC CTGGACCAAC GCGCCGATGC CGTACTACCC GGACGTTGCC
GGCGCGCCGC AGAATTCGAT CATCGGCGGC GCCTCGCTGT GGGTGATGGG CGGCAAGAGC
GCCGACGAAT ACAAGGGCGT CGCCAAGTTC CTCGCCTTCC TGTCCGACAC CGACCGTCAG
GTCGCGGTGC ACAAGGCGTC GGGCTATCTG CCGATCACCA AGGCGGCCTA CGAGAAGGCC
AAGGCCGACG GCTTCTACAA CGACCAGCCC TATCTCGAGA CCCCGATCAA GGAACTGACC
AACAAGCCGC CGACCGAGAA TTCCCGCGGC CTGCGGCTCG GCAACATGGT TCAGCTCCGC
GACGTCTGGG CCGAGGAAAT CGAGCAGGCG CTGGCCGGCA AGAAGACCGC CAAGGAAGCG
TTGGATGCAG CCGTCACCCG CGGCAACGTG ATGCTGCGGC AGTTCGAAAA GACCGCGGTG
AAGTAA
|
|---|
| Protein sequence | MTFRLKALTA AMATTIAATL LIAPAQAATE IQWWHAMTGG NNDVVVKLAN DFNAAQSDYK
VVPTYKGSYA DTMNAGIAAF RAGNAPHIMQ VFEVGTATMM AATGAVKPVY KLMQETGETF
DPNAYLPAIT GYYSTSKGEM LSFPFNSSST VMWVNLDALK KAGIAEVPKT WPQVFEDAKK
LKAAGYATCG FSTAWVTWVN LEQLSAWHNV PLASKANGLD GFDTKLEFNG PVQVKHLETL
IELQKDKTYD YSGRTNTGEG RFTSGECPIF LTSSGFFGNV KSQAKFAWTN APMPYYPDVA
GAPQNSIIGG ASLWVMGGKS ADEYKGVAKF LAFLSDTDRQ VAVHKASGYL PITKAAYEKA
KADGFYNDQP YLETPIKELT NKPPTENSRG LRLGNMVQLR DVWAEEIEQA LAGKKTAKEA
LDAAVTRGNV MLRQFEKTAV K
|
|---|
| |