Gene Rpal_0060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0060 
Symbol 
ID6407702 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp63087 
End bp64415 
Gene Length1329 bp 
Protein Length442 aa 
Translation table11 
GC content63% 
IMG OID642709968 
Productextracellular solute-binding protein family 1 
Protein accessionYP_001989098 
Protein GI192288493 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.700837 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCATTTC GATCCTTTGG CCTGACTGCG GCCGCCGCGA CGGCGATCGC CGCAACGCTG 
GCGATGGCTG CGCCGGCGTA TGCGGTCACC GAAATTCAGT GGTGGCACGC GATGACCGGT
GGCAACAACG ACGTCATCGT CAAGCTGGCC AACGAGTTCA ATGCCGCGCA GGGCGACTAC
AAGGTGGTGC CGACCTACAA GGGTGGCTAC GCCGATACCA TGAACGCCGG CATCGCGGCG
TTCCGCGCCG GCAACGCGCC GCACATCCTC CAGGTGTTCG AAGTCGGCAC CGCCACCATG
ATGGCGGCGA CTGGCGCGGT AAAGCCGGTC TACAAATTGA TGCAGGAGAC CGGCGAGCCG
TTCGACCCCA AGGCCTATCT GCCGGCGATC ACCGGCTATT ACTCGACCTC CAAGGGCGAG
ATGCTGTCGT TCCCGTTCAA CTCGTCGTCG ATGGTGATGT GGGTCAATCT CGACGCGCTG
AAGAAGGCCG ACATCGCCGA GATCCCGAAG ACCTGGCCCG AGGTGTTCGA AGACGCCAAG
AAGCTGAAGG CGGCCGGCTA CGCCACCTGC GGTTTCTCCA CCGCCTGGGT CACCTGGGCC
AATCTCGAGC AGCTCTCGGC CTGGCACAAC GTGCCGCTGG CCAGCAAAGC CAATGGTCTC
GACGGCTTCG ACACCAAGCT CGAATTCAAC GGCCCGGTTC AGGTCAAGCA CCTGCAGAAG
CTGATCGAGC TGCAGAAGGA CAAGACCTAC GATTATTCCG GCCGCACCAA CACCGGCGAA
GGCCGCTTCA CCTCGGGTGA ATGCCCGCTG TTCCTGACCT CGTCGGGCTT CTTCGGCAAC
GTCAAGTCGC AGGCCAAGTT CAACTGGACC AACGCGCCGA TGCCCTACTA TCCGGACGTC
AAGGGTGCGC CGCAGAATTC GATCATCGGC GGCGCTTCGC TGTGGGTGAT GGGCGGCAAG
AATGCCGCCG AGTACAAGGG CGTCGCCAAG TTCCTGGCGT TCCTGTCCGA CACCGATCGT
CAGGTCGCGA TCCACAAGGC CTCGGGCTAT CTGCCGATCA CCAAGGCAGC CTATGAGAAG
GCCAAGGCCG ACGGCTTCTA CAAGGAGCAG CCGTACCTGG AGACGCCGAT CAAGGAGCTG
ACCAACAAGC CGCCGACCGA GAATTCGCGC GGTCTGCGGC TCGGCAATAT GGTGCAGCTC
CGCGACGTCT GGGCTGAAGA AATCGAGCAG GCGCTGGCCG GCAAGAAGAC CGCCCAGGAA
GCCCTCGACG CCGCTGTGAC GCGCGGCAAC ACGATGCTGC GGCAGTTCGA GAAGACGGCG
GTGAAGTGA
 
Protein sequence
MAFRSFGLTA AAATAIAATL AMAAPAYAVT EIQWWHAMTG GNNDVIVKLA NEFNAAQGDY 
KVVPTYKGGY ADTMNAGIAA FRAGNAPHIL QVFEVGTATM MAATGAVKPV YKLMQETGEP
FDPKAYLPAI TGYYSTSKGE MLSFPFNSSS MVMWVNLDAL KKADIAEIPK TWPEVFEDAK
KLKAAGYATC GFSTAWVTWA NLEQLSAWHN VPLASKANGL DGFDTKLEFN GPVQVKHLQK
LIELQKDKTY DYSGRTNTGE GRFTSGECPL FLTSSGFFGN VKSQAKFNWT NAPMPYYPDV
KGAPQNSIIG GASLWVMGGK NAAEYKGVAK FLAFLSDTDR QVAIHKASGY LPITKAAYEK
AKADGFYKEQ PYLETPIKEL TNKPPTENSR GLRLGNMVQL RDVWAEEIEQ ALAGKKTAQE
ALDAAVTRGN TMLRQFEKTA VK