| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0060 |
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| Symbol | |
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| ID | 6407702 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 63087 |
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| End bp | 64415 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642709968 |
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| Product | extracellular solute-binding protein family 1 |
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| Protein accession | YP_001989098 |
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| Protein GI | 192288493 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.700837 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCATTTC GATCCTTTGG CCTGACTGCG GCCGCCGCGA CGGCGATCGC CGCAACGCTG
GCGATGGCTG CGCCGGCGTA TGCGGTCACC GAAATTCAGT GGTGGCACGC GATGACCGGT
GGCAACAACG ACGTCATCGT CAAGCTGGCC AACGAGTTCA ATGCCGCGCA GGGCGACTAC
AAGGTGGTGC CGACCTACAA GGGTGGCTAC GCCGATACCA TGAACGCCGG CATCGCGGCG
TTCCGCGCCG GCAACGCGCC GCACATCCTC CAGGTGTTCG AAGTCGGCAC CGCCACCATG
ATGGCGGCGA CTGGCGCGGT AAAGCCGGTC TACAAATTGA TGCAGGAGAC CGGCGAGCCG
TTCGACCCCA AGGCCTATCT GCCGGCGATC ACCGGCTATT ACTCGACCTC CAAGGGCGAG
ATGCTGTCGT TCCCGTTCAA CTCGTCGTCG ATGGTGATGT GGGTCAATCT CGACGCGCTG
AAGAAGGCCG ACATCGCCGA GATCCCGAAG ACCTGGCCCG AGGTGTTCGA AGACGCCAAG
AAGCTGAAGG CGGCCGGCTA CGCCACCTGC GGTTTCTCCA CCGCCTGGGT CACCTGGGCC
AATCTCGAGC AGCTCTCGGC CTGGCACAAC GTGCCGCTGG CCAGCAAAGC CAATGGTCTC
GACGGCTTCG ACACCAAGCT CGAATTCAAC GGCCCGGTTC AGGTCAAGCA CCTGCAGAAG
CTGATCGAGC TGCAGAAGGA CAAGACCTAC GATTATTCCG GCCGCACCAA CACCGGCGAA
GGCCGCTTCA CCTCGGGTGA ATGCCCGCTG TTCCTGACCT CGTCGGGCTT CTTCGGCAAC
GTCAAGTCGC AGGCCAAGTT CAACTGGACC AACGCGCCGA TGCCCTACTA TCCGGACGTC
AAGGGTGCGC CGCAGAATTC GATCATCGGC GGCGCTTCGC TGTGGGTGAT GGGCGGCAAG
AATGCCGCCG AGTACAAGGG CGTCGCCAAG TTCCTGGCGT TCCTGTCCGA CACCGATCGT
CAGGTCGCGA TCCACAAGGC CTCGGGCTAT CTGCCGATCA CCAAGGCAGC CTATGAGAAG
GCCAAGGCCG ACGGCTTCTA CAAGGAGCAG CCGTACCTGG AGACGCCGAT CAAGGAGCTG
ACCAACAAGC CGCCGACCGA GAATTCGCGC GGTCTGCGGC TCGGCAATAT GGTGCAGCTC
CGCGACGTCT GGGCTGAAGA AATCGAGCAG GCGCTGGCCG GCAAGAAGAC CGCCCAGGAA
GCCCTCGACG CCGCTGTGAC GCGCGGCAAC ACGATGCTGC GGCAGTTCGA GAAGACGGCG
GTGAAGTGA
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| Protein sequence | MAFRSFGLTA AAATAIAATL AMAAPAYAVT EIQWWHAMTG GNNDVIVKLA NEFNAAQGDY
KVVPTYKGGY ADTMNAGIAA FRAGNAPHIL QVFEVGTATM MAATGAVKPV YKLMQETGEP
FDPKAYLPAI TGYYSTSKGE MLSFPFNSSS MVMWVNLDAL KKADIAEIPK TWPEVFEDAK
KLKAAGYATC GFSTAWVTWA NLEQLSAWHN VPLASKANGL DGFDTKLEFN GPVQVKHLQK
LIELQKDKTY DYSGRTNTGE GRFTSGECPL FLTSSGFFGN VKSQAKFNWT NAPMPYYPDV
KGAPQNSIIG GASLWVMGGK NAAEYKGVAK FLAFLSDTDR QVAIHKASGY LPITKAAYEK
AKADGFYKEQ PYLETPIKEL TNKPPTENSR GLRLGNMVQL RDVWAEEIEQ ALAGKKTAQE
ALDAAVTRGN TMLRQFEKTA VK
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