More than 300 homologs were found in PanDaTox collection
for query gene Rsph17025_0978 on replicon NC_009428
Organism: Rhodobacter sphaeroides ATCC 17025



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009428  Rsph17025_0978  two component LuxR family transcriptional regulator  100 
 
 
247 aa  504  9.999999999999999e-143  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.159022  normal 
 
 
-
 
NC_009049  Rsph17029_1961  response regulator receiver protein  84.62 
 
 
247 aa  434  1e-121  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0316  LuxR family transcriptional regulator  88.73 
 
 
213 aa  393  1e-108  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.155222  n/a   
 
 
-
 
NC_009620  Smed_4826  two component LuxR family transcriptional regulator  47.47 
 
 
267 aa  179  2.9999999999999997e-44  Sinorhizobium medicae WSM419  Bacteria  normal  0.847801  normal  0.0520322 
 
 
-
 
NC_008254  Meso_2574  two component LuxR family transcriptional regulator  42.11 
 
 
253 aa  174  9.999999999999999e-43  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_012852  Rleg_6225  two component transcriptional regulator, LuxR family  39.47 
 
 
258 aa  170  2e-41  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.173155 
 
 
-
 
NC_011371  Rleg2_6421  two component transcriptional regulator, LuxR family  40.74 
 
 
251 aa  166  2.9999999999999998e-40  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.872179  normal 
 
 
-
 
NC_009620  Smed_4801  two component LuxR family transcriptional regulator  42.2 
 
 
259 aa  162  5.0000000000000005e-39  Sinorhizobium medicae WSM419  Bacteria  normal  0.433912  normal 
 
 
-
 
NC_004311  BRA0415  LuxR family transcriptional regulator  40.72 
 
 
255 aa  159  5e-38  Brucella suis 1330  Bacteria  normal  0.272996  n/a   
 
 
-
 
NC_009504  BOV_A0358  LuxR family transcriptional regulator  40.72 
 
 
255 aa  159  5e-38  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3368  two component LuxR family transcriptional regulator  40.09 
 
 
258 aa  157  2e-37  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0298943  n/a   
 
 
-
 
NC_009050  Rsph17029_3701  two component LuxR family transcriptional regulator  42.38 
 
 
253 aa  143  2e-33  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.567008  normal  0.770716 
 
 
-
 
NC_010505  Mrad2831_4608  two component LuxR family transcriptional regulator  35 
 
 
275 aa  133  1.9999999999999998e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.313635  normal 
 
 
-
 
NC_007964  Nham_2943  two component LuxR family transcriptional regulator  37.38 
 
 
351 aa  130  2.0000000000000002e-29  Nitrobacter hamburgensis X14  Bacteria  normal  0.692808  n/a   
 
 
-
 
NC_007406  Nwi_0957  LuxR family transcriptional regulator  37.74 
 
 
342 aa  127  2.0000000000000002e-28  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.553991  normal  0.407109 
 
 
-
 
NC_009667  Oant_0267  two component LuxR family transcriptional regulator  33.98 
 
 
241 aa  102  8e-21  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1738  response regulator receiver protein  32.87 
 
 
267 aa  91.7  1e-17  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  38.06 
 
 
209 aa  78.6  0.00000000000008  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_012850  Rleg_0280  two component transcriptional regulator, LuxR family  31.22 
 
 
245 aa  77  0.0000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.417338  normal 
 
 
-
 
NC_011369  Rleg2_0250  two component transcriptional regulator, LuxR family  30.8 
 
 
260 aa  76.3  0.0000000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.664516  normal 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  26.29 
 
 
227 aa  75.1  0.000000000001  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009430  Rsph17025_4078  hypothetical protein  32.34 
 
 
243 aa  74.7  0.000000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0439982  normal  0.0668702 
 
 
-
 
NC_009668  Oant_3972  two component LuxR family transcriptional regulator  28.63 
 
 
251 aa  74.7  0.000000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.111106  n/a   
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  32.77 
 
 
229 aa  74.3  0.000000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  27.23 
 
 
221 aa  73.9  0.000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  29.67 
 
 
221 aa  73.6  0.000000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_1210  two component transcriptional regulator, LuxR family  33.5 
 
 
198 aa  73.2  0.000000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  0.292938  normal 
 
 
-
 
NC_007404  Tbd_1399  transcriptional regulator NarL  26.6 
 
 
219 aa  72.8  0.000000000005  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0261138  normal 
 
 
-
 
NC_009719  Plav_1690  two component LuxR family transcriptional regulator  36.94 
 
 
215 aa  72.8  0.000000000005  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.104312 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  30.05 
 
 
223 aa  72.4  0.000000000006  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  27.36 
 
 
208 aa  72  0.000000000008  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_0960  two component LuxR family transcriptional regulator  35.11 
 
 
214 aa  71.2  0.00000000001  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  30.91 
 
 
248 aa  70.9  0.00000000002  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  32.93 
 
 
218 aa  70.5  0.00000000003  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal 
 
 
-
 
NC_007404  Tbd_2464  two component LuxR family transcriptional regulator  30.2 
 
 
221 aa  70.1  0.00000000003  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  33.08 
 
 
231 aa  70.1  0.00000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  32.93 
 
 
218 aa  70.5  0.00000000003  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_007794  Saro_1627  two component LuxR family transcriptional regulator  26.89 
 
 
244 aa  69.7  0.00000000004  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0484719  n/a   
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  27.09 
 
 
219 aa  69.7  0.00000000004  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_013411  GYMC61_1316  two component transcriptional regulator, LuxR family  34.38 
 
 
210 aa  69.7  0.00000000004  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011894  Mnod_3782  two component transcriptional regulator, LuxR family  37.01 
 
 
223 aa  69.3  0.00000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_1894  putative response regulator receiver protein  36.04 
 
 
204 aa  69.3  0.00000000005  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.761861  normal  0.0769356 
 
 
-
 
NC_012850  Rleg_4328  transcriptional regulator, LuxR family  43.56 
 
 
260 aa  69.3  0.00000000005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  decreased coverage  0.00000000127099  normal  0.0225245 
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  30.67 
 
 
219 aa  68.9  0.00000000006  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.817999 
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  28.71 
 
 
221 aa  69.3  0.00000000006  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  32.86 
 
 
227 aa  68.9  0.00000000007  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_010506  Swoo_2245  two component LuxR family transcriptional regulator  32.59 
 
 
218 aa  68.9  0.00000000008  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00227369  normal  0.0543921 
 
 
-
 
NC_011369  Rleg2_3999  transcriptional regulator, LuxR family  27.5 
 
 
260 aa  68.6  0.00000000008  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.0000000117104  normal 
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  30.67 
 
 
219 aa  68.6  0.00000000008  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  26.54 
 
 
252 aa  68.6  0.00000000009  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  34.35 
 
 
210 aa  68.2  0.0000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  32.56 
 
 
221 aa  67.8  0.0000000001  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.0179337 
 
 
-
 
NC_013757  Gobs_3437  two component transcriptional regulator, LuxR family  30.15 
 
 
248 aa  68.2  0.0000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.39912  n/a   
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  36.5 
 
 
226 aa  68.2  0.0000000001  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  29.46 
 
 
222 aa  68.2  0.0000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  28 
 
 
220 aa  68.6  0.0000000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4816  response regulator receiver protein  38.02 
 
 
248 aa  68.2  0.0000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.890736  normal  0.794324 
 
 
-
 
NC_008347  Mmar10_2744  two component LuxR family transcriptional regulator  33.58 
 
 
201 aa  68.2  0.0000000001  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  28.1 
 
 
220 aa  67  0.0000000002  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_012912  Dd1591_1848  transcriptional regulator NarL  25.85 
 
 
215 aa  67.4  0.0000000002  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  27.14 
 
 
220 aa  67.4  0.0000000002  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  27.14 
 
 
220 aa  67.8  0.0000000002  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  28.78 
 
 
221 aa  67.4  0.0000000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  32.31 
 
 
220 aa  67  0.0000000002  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_003909  BCE_1563  DNA-binding response regulator  31.39 
 
 
210 aa  66.6  0.0000000003  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000000942452  n/a   
 
 
-
 
NC_009621  Smed_5114  two component LuxR family transcriptional regulator  33.33 
 
 
230 aa  67  0.0000000003  Sinorhizobium medicae WSM419  Bacteria  normal  decreased coverage  0.00554548 
 
 
-
 
NC_005945  BAS1348  DNA-binding response regulator  31.39 
 
 
210 aa  66.6  0.0000000003  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000440829  n/a   
 
 
-
 
NC_005957  BT9727_1322  response regulator  31.39 
 
 
210 aa  66.6  0.0000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  7.30192e-17  n/a   
 
 
-
 
NC_013441  Gbro_1936  regulatory protein LuxR  36.42 
 
 
218 aa  67  0.0000000003  Gordonia bronchialis DSM 43247  Bacteria  normal  0.548655  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  32.31 
 
 
220 aa  67  0.0000000003  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_007530  GBAA_1457  DNA-binding response regulator  31.39 
 
 
210 aa  66.6  0.0000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000538049  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1363  two component LuxR family transcriptional regulator  31.39 
 
 
210 aa  66.6  0.0000000003  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.0039551  n/a   
 
 
-
 
NC_011658  BCAH187_A1601  DNA-binding response regulator  31.39 
 
 
210 aa  66.6  0.0000000003  Bacillus cereus AH187  Bacteria  unclonable  0.00000000136266  n/a   
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  32.31 
 
 
220 aa  66.6  0.0000000003  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  26.67 
 
 
220 aa  66.6  0.0000000003  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  32.31 
 
 
220 aa  67  0.0000000003  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  28.85 
 
 
222 aa  66.6  0.0000000004  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1321  response regulator  31.39 
 
 
210 aa  66.6  0.0000000004  Bacillus cereus E33L  Bacteria  hitchhiker  0.00000332221  n/a   
 
 
-
 
NC_011899  Hore_19700  two component transcriptional regulator, LuxR family  36.3 
 
 
209 aa  66.2  0.0000000004  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  34.07 
 
 
224 aa  66.6  0.0000000004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  30.29 
 
 
227 aa  66.2  0.0000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_011772  BCG9842_B3849  DNA-binding response regulator  31.39 
 
 
210 aa  66.6  0.0000000004  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000308683  hitchhiker  0.000000000350245 
 
 
-
 
NC_009380  Strop_2235  regulatory protein, LuxR  35.04 
 
 
231 aa  66.2  0.0000000004  Salinispora tropica CNB-440  Bacteria  normal  0.422182  normal 
 
 
-
 
NC_013757  Gobs_4064  two component transcriptional regulator, LuxR family  30.43 
 
 
217 aa  66.6  0.0000000004  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  31.54 
 
 
220 aa  65.9  0.0000000005  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  36.43 
 
 
215 aa  66.2  0.0000000005  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_38930  putative transcriptional regulator  26.15 
 
 
221 aa  66.2  0.0000000005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  33.08 
 
 
232 aa  66.2  0.0000000005  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_009656  PSPA7_3317  putative transcriptional regulator  26.15 
 
 
221 aa  65.9  0.0000000006  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  35.38 
 
 
216 aa  65.9  0.0000000006  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  34.75 
 
 
221 aa  65.5  0.0000000008  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0232  response regulator receiver protein  30.82 
 
 
213 aa  65.1  0.000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2010  two component transcriptional regulator, LuxR family  36.99 
 
 
214 aa  64.7  0.000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1531  DNA-binding response regulator  30.66 
 
 
210 aa  64.7  0.000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  8.64189e-24 
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  27.7 
 
 
217 aa  64.7  0.000000001  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  25.85 
 
 
216 aa  64.7  0.000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.192356 
 
 
-
 
NC_010717  PXO_04459  two-component system regulatory protein  29.23 
 
 
213 aa  64.7  0.000000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_012853  Rleg_5633  two component transcriptional regulator, LuxR family  31.65 
 
 
203 aa  65.1  0.000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.603295  normal 
 
 
-
 
NC_011989  Avi_0584  two component response regulator  27.52 
 
 
215 aa  64.7  0.000000001  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  26.42 
 
 
238 aa  64.7  0.000000001  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
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